mRNA_D-dudresnayi_contig10144.192.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10144.192.1
Unique NamemRNA_D-dudresnayi_contig10144.192.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10144.192.1 vs. uniprot
Match: A0A6P7YUX5_9AMPH (uncharacterized protein LOC115477963 n=1 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7YUX5_9AMPH)

HSP 1 Score: 53.1 bits (126), Expect = 2.480e-5
Identity = 33/87 (37.93%), Postives = 41/87 (47.13%), Query Frame = 1 
Query:   61 ELRPLQERGGDINLAVALHSVVANQMDYLILPLLLN-GASVNFTDPEGRTPLIVATAVGNAHAVRILIQHGADITHKDCTGKCAFQH 318
            EL  L + G  +     LH        Y +L + LN GA V  TD E RT L  A    N H   +LI HGA++ HKD  G  AF +
Sbjct:  269 ELNSLSKNGNSV-----LHLAAIRNGTYEVLAMFLNSGADVESTDREQRTALFYAIFATNFHGASLLINHGANVHHKDNRGLTAFDY 350
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BLAST of mRNA_D-dudresnayi_contig10144.192.1 vs. uniprot
Match: A0A7S0RCM2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RCM2_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 3.690e-5
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:  139 DYLILPLLLNG---ASVNFT--DPEGRTPLIVATAVGNAHAVRILIQHGADITHKDCTGK 303
            D + L  LL G   A+VNF   DP G TPL+ A  +G+A AV IL++HGAD+ H D  G+
Sbjct:    8 DGVSLLYLLTGRTKANVNFVGNDPSGWTPLLFAIDMGDASAVEILLEHGADVHHVDSNGE 67
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BLAST of mRNA_D-dudresnayi_contig10144.192.1 vs. uniprot
Match: V3ZEB1_LOTGI (Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZEB1_LOTGI)

HSP 1 Score: 51.6 bits (122), Expect = 8.840e-5
Identity = 27/80 (33.75%), Postives = 41/80 (51.25%), Query Frame = 1 
Query:   79 ERGGDINLAVALHSVVANQMDYLILPLLLNGASVNFTDPEGRTPLIVATAVGNAHAVRILIQHGADITHKDCTGKCAFQH 318
            E G  I  A  +     +    ++  L+  G++VN +D  G TPL+ A    +  ++R+LIQHGAD+ HKD  G     H
Sbjct:  274 ENGETILSAAIMMKATHSPTSDIVAKLITAGSNVNASDVYGYTPLMQAAFCKDLDSIRLLIQHGADLKHKDMDGNTLINH 353
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10144.192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6P7YUX5_9AMPH2.480e-537.93uncharacterized protein LOC115477963 n=1 Tax=Micro... [more]
A0A7S0RCM2_9CHLO3.690e-548.33Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
V3ZEB1_LOTGI8.840e-533.75Uncharacterized protein (Fragment) n=1 Tax=Lottia ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10144contigD-dudresnayi_contig10144:9140..9835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size449
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10144.192.1prot_D-dudresnayi_contig10144.192.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10144 9169..9700 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.8811-UTR-D-dudresnayi_contig10144:9139..91681622927514.8811-UTR-D-dudresnayi_contig10144:9139..9168Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10144 9140..9168 -
1690556787.6244175-UTR-D-dudresnayi_contig10144:9139..91681690556787.6244175-UTR-D-dudresnayi_contig10144:9139..9168Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10144 9140..9168 -
1622927514.9150417-UTR-D-dudresnayi_contig10144:9700..98351622927514.9150417-UTR-D-dudresnayi_contig10144:9700..9835Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10144 9701..9835 -
1690556787.6490588-UTR-D-dudresnayi_contig10144:9700..98351690556787.6490588-UTR-D-dudresnayi_contig10144:9700..9835Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10144 9701..9835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.8931558-CDS-D-dudresnayi_contig10144:9168..94191622927514.8931558-CDS-D-dudresnayi_contig10144:9168..9419Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10144 9169..9419 -
1690556787.632349-CDS-D-dudresnayi_contig10144:9168..94191690556787.632349-CDS-D-dudresnayi_contig10144:9168..9419Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10144 9169..9419 -
1622927514.9045782-CDS-D-dudresnayi_contig10144:9666..97001622927514.9045782-CDS-D-dudresnayi_contig10144:9666..9700Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10144 9667..9700 -
1690556787.641741-CDS-D-dudresnayi_contig10144:9666..97001690556787.641741-CDS-D-dudresnayi_contig10144:9666..9700Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10144 9667..9700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10144.192.1

>prot_D-dudresnayi_contig10144.192.1 ID=prot_D-dudresnayi_contig10144.192.1|Name=mRNA_D-dudresnayi_contig10144.192.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=95bp
MDYLILPLLLNGASVNFTDPEGRTPLIVATAVGNAHAVRILIQHGADITH
KDCTGKCAFQHTEELIKYQKACCKKMRIPFILKNNLQICMQLLR*
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mRNA from alignment at D-dudresnayi_contig10144:9140..9835-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10144.192.1 ID=mRNA_D-dudresnayi_contig10144.192.1|Name=mRNA_D-dudresnayi_contig10144.192.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=696bp|location=Sequence derived from alignment at D-dudresnayi_contig10144:9140..9835- (Desmarestia dudresnayi DdudBR16 monoicous)
TTAATACGTGATGTTGCTGATTCTACTGAGAGTGACTATCCAGTAAGTAC
GTTCCTGTCGGAGCTGCGACCGCTACAGGAGCGGGGTGGGGACATCAACC
TGGCAGTGGCGTTACACAGTGTGGTGGCGAATCAGATGGACTACCTTATC
CTCCCACTGCTACTCAATGGTAGGCTAGTGTATATGCTGTTTGAGTTGTA
TGTATTGTATATATATCTTTATGGGAGGAGTTTATTATGTTACATGTATA
TACCGGTAGTATAGTTATGCTAATATGATACTATATTATATTAGTATTGT
ACATACATAATATAACTAGTGTACTTAAATGAATACCTATATGATCCTGA
TATATATCATCAGCTTTACTATCGCCACTATACTATACCTTATACTGTAC
TATATGCTGCCTCTAGGCGCCTCAGTGAACTTTACAGATCCCGAAGGCCG
TACCCCATTAATAGTCGCCACTGCAGTAGGGAATGCACACGCAGTACGCA
TACTCATACAACACGGCGCTGATATCACACACAAAGACTGTACAGGAAAA
TGTGCGTTTCAACATACAGAAGAACTAATAAAATATCAAAAAGCTTGTTG
CAAAAAAATGAGAATTCCTTTTATATTGAAGAATAATTTGCAAATTTGTA
TGCAATTACTACGTTAATACTGTACTAATTATACTAAATATTCTAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10144:9140..9835-

>mRNA_D-dudresnayi_contig10144.192.1 ID=mRNA_D-dudresnayi_contig10144.192.1|Name=mRNA_D-dudresnayi_contig10144.192.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at D-dudresnayi_contig10144:9140..9835- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGACTACCTTATCCTCCCACTGCTACTCAATGATGGACTACCTTATCC
TCCCACTGCTACTCAATGGCGCCTCAGTGAACTTTACAGATCCCGAAGGC
CGTACCCCATTAATAGTCGCCACTGCAGTAGGGAATGCACACGCAGTACG
CATACTCATACAACACGGCGCTGATATCACACACAAAGACTGTACAGGAA
AATGTGCGTTTCAACATACAGAAGAACTAATAAAATATCAAAAAGCTTGT
TGCAAAAAAATGAGAATTCCTTTTATATTGAAGAATAATTTGCAAATTTG
TATGCAATTACTACGTTAAGCGCCTCAGTGAACTTTACAGATCCCGAAGG
CCGTACCCCATTAATAGTCGCCACTGCAGTAGGGAATGCACACGCAGTAC
GCATACTCATACAACACGGCGCTGATATCACACACAAAGACTGTACAGGA
AAATGTGCGTTTCAACATACAGAAGAACTAATAAAATATCAAAAAGCTTG
TTGCAAAAAAATGAGAATTCCTTTTATATTGAAGAATAATTTGCAAATTT
GTATGCAATTACTACGTTAA
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