mRNA_D-dudresnayi_contig10142.187.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10142.187.1
Unique NamemRNA_D-dudresnayi_contig10142.187.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10142.187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10142contigD-dudresnayi_contig10142:1249..1810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size562
Cds size561
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.8394449-CDS-D-dudresnayi_contig10142:1248..18091622927514.8394449-CDS-D-dudresnayi_contig10142:1248..1809Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10142 1249..1809 +
1690556787.6165698-CDS-D-dudresnayi_contig10142:1248..18091690556787.6165698-CDS-D-dudresnayi_contig10142:1248..1809Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10142 1249..1809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10142.187.1prot_D-dudresnayi_contig10142.187.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10142 1249..1809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10142.187.1

>prot_D-dudresnayi_contig10142.187.1 ID=prot_D-dudresnayi_contig10142.187.1|Name=mRNA_D-dudresnayi_contig10142.187.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=187bp
HLLPPISRLTSILSTPSTFSVVVFTHRAFFISVFTLVQVFLFTVSILPTP
RAFLIIVFTPRASLTVFTSCASLIVLALRALSSLLTPRAFHIIAPTPRAF
FLIIAFTPSAYLIVLVLRAISSLLTPRAFLIIVFTPRAFLIIVFTTRACP
IVFILRAFSTAFTLLPPLTISNLHPLYMNFFLLLHDF
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mRNA from alignment at D-dudresnayi_contig10142:1249..1810+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10142.187.1 ID=mRNA_D-dudresnayi_contig10142.187.1|Name=mRNA_D-dudresnayi_contig10142.187.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=562bp|location=Sequence derived from alignment at D-dudresnayi_contig10142:1249..1810+ (Desmarestia dudresnayi DdudBR16 monoicous)
CACCTCCTCCCCCCCATCTCCCGCCTCACTTCCATCCTCTCGACTCCCTC
TACCTTCAGCGTCGTCGTCTTCACCCACCGTGCCTTCTTCATCTCCGTCT
TCACCCTCGTCCAAGTCTTCCTCTTCACGGTTTCCATCCTCCCAACTCCC
CGTGCCTTCCTCATCATCGTCTTCACTCCCCGTGCCTCCCTCACTGTCTT
CACTTCCTGTGCATCCCTCATCGTCCTCGCCCTCCGTGCTCTCTCCAGCC
TCCTCACTCCCCGTGCCTTCCACATCATCGCCCCCACTCCCCGTGCCTTC
TTCCTCATCATCGCCTTCACTCCCAGTGCATACCTCATCGTCCTCGTCCT
CCGTGCTATCTCCAGCCTCCTCACTCCCCGTGCTTTCCTCATCATCGTCT
TCACTCCCCGTGCCTTCCTCATCATCGTCTTCACTACCCGTGCCTGCCCC
ATCGTCTTTATCCTCCGAGCCTTCAGCACCGCCTTCACCCTCCTGCCTCC
CCTCACTATCTCCAACCTCCATCCCCTCTACATGAACTTTTTTCTCCTCC
TTCATGACTTTT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10142:1249..1810+

>mRNA_D-dudresnayi_contig10142.187.1 ID=mRNA_D-dudresnayi_contig10142.187.1|Name=mRNA_D-dudresnayi_contig10142.187.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at D-dudresnayi_contig10142:1249..1810+ (Desmarestia dudresnayi DdudBR16 monoicous)
CACCTCCTCCCCCCCATCTCCCGCCTCACTTCCATCCTCTCGACTCCCTC
TACCTTCAGCGTCGTCGTCTTCACCCACCGTGCCTTCTTCATCTCCGTCT
TCACCCTCGTCCAAGTCTTCCTCTTCACGGTTTCCATCCTCCCAACTCCC
CGTGCCTTCCTCATCATCGTCTTCACTCCCCGTGCCTCCCTCACTGTCTT
CACTTCCTGTGCATCCCTCATCGTCCTCGCCCTCCGTGCTCTCTCCAGCC
TCCTCACTCCCCGTGCCTTCCACATCATCGCCCCCACTCCCCGTGCCTTC
TTCCTCATCATCGCCTTCACTCCCAGTGCATACCTCATCGTCCTCGTCCT
CCGTGCTATCTCCAGCCTCCTCACTCCCCGTGCTTTCCTCATCATCGTCT
TCACTCCCCGTGCCTTCCTCATCATCGTCTTCACTACCCGTGCCTGCCCC
ATCGTCTTTATCCTCCGAGCCTTCAGCACCGCCTTCACCCTCCTGCCTCC
CCTCACTATCTCCAACCTCCATCCCCTCTACATGAACTTTTTTCTCCTCC
TTCATGACTTTCACCTCCTCCCCCCCATCTCCCGCCTCACTTCCATCCTC
TCGACTCCCTCTACCTTCAGCGTCGTCGTCTTCACCCACCGTGCCTTCTT
CATCTCCGTCTTCACCCTCGTCCAAGTCTTCCTCTTCACGGTTTCCATCC
TCCCAACTCCCCGTGCCTTCCTCATCATCGTCTTCACTCCCCGTGCCTCC
CTCACTGTCTTCACTTCCTGTGCATCCCTCATCGTCCTCGCCCTCCGTGC
TCTCTCCAGCCTCCTCACTCCCCGTGCCTTCCACATCATCGCCCCCACTC
CCCGTGCCTTCTTCCTCATCATCGCCTTCACTCCCAGTGCATACCTCATC
GTCCTCGTCCTCCGTGCTATCTCCAGCCTCCTCACTCCCCGTGCTTTCCT
CATCATCGTCTTCACTCCCCGTGCCTTCCTCATCATCGTCTTCACTACCC
GTGCCTGCCCCATCGTCTTTATCCTCCGAGCCTTCAGCACCGCCTTCACC
CTCCTGCCTCCCCTCACTATCTCCAACCTCCATCCCCTCTACATGAACTT
TTTTCTCCTCCTTCATGACTTT
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