mRNA_D-dudresnayi_contig10142.186.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10142.186.1
Unique NamemRNA_D-dudresnayi_contig10142.186.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10142.186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10142contigD-dudresnayi_contig10142:258..928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size672
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.7859008-CDS-D-dudresnayi_contig10142:257..6171622927514.7859008-CDS-D-dudresnayi_contig10142:257..617Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10142 258..617 +
1690556787.6004908-CDS-D-dudresnayi_contig10142:257..6171690556787.6004908-CDS-D-dudresnayi_contig10142:257..617Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10142 258..617 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.8007884-UTR-D-dudresnayi_contig10142:617..9281622927514.8007884-UTR-D-dudresnayi_contig10142:617..928Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10142 618..928 +
1690556787.6085424-UTR-D-dudresnayi_contig10142:617..9281690556787.6085424-UTR-D-dudresnayi_contig10142:617..928Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10142 618..928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10142.186.1prot_D-dudresnayi_contig10142.186.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10142 258..617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10142.186.1

>prot_D-dudresnayi_contig10142.186.1 ID=prot_D-dudresnayi_contig10142.186.1|Name=mRNA_D-dudresnayi_contig10142.186.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=120bp
QAAYSYPQKNSRKILPPRKIPTKTIYYLPDEVFHHLGMPCVVERPLPPAV
SKTKNACWRHELFRHSQSANVPRTTTQLQNFFLLILLRRQRRKKCPHQKF
PPRHLHPSLLHPNLHPVWR*
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mRNA from alignment at D-dudresnayi_contig10142:258..928+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10142.186.1 ID=mRNA_D-dudresnayi_contig10142.186.1|Name=mRNA_D-dudresnayi_contig10142.186.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=671bp|location=Sequence derived from alignment at D-dudresnayi_contig10142:258..928+ (Desmarestia dudresnayi DdudBR16 monoicous)
CAGGCGGCGTACTCGTATCCTCAGAAAAACTCCCGGAAAATTCTTCCTCC
GAGAAAGATTCCGACGAAGACGATATACTATCTACCAGATGAGGTTTTCC
ACCACCTAGGGATGCCTTGCGTTGTGGAACGCCCCCTCCCCCCGGCGGTC
TCGAAGACAAAGAACGCCTGCTGGAGACACGAGCTTTTCCGGCACTCCCA
ATCGGCGAACGTTCCTCGGACAACGACGCAGCTGCAGAATTTTTTTCTTC
TGATTCTTCTTCGTCGTCAGAGAAGAAAGAAATGTCCTCATCAGAAATTC
CCTCCTCGTCATCTCCATCCAAGCCTTCTTCATCCAAATCTTCATCCTGT
GTGGAGGTGAGGTCCTCCTCATCGAGATCTGACTCCTCGACGACATCACC
AGAAGGCAGAGAAGAAGACATGAAACCGTCGTCTGAGTCCCCCTCGCCTT
CAGGAAACGACGACATATCACCAACGCTGGTGCTACCGCCGTCACAGTCA
CTGGTACTGCCAGTCCCACTATCACTGCCGCAGCTGATCCTGCCAGCGGA
ATAGTCGCTTCGGGGAAGAGCCGAGCGCCCTCCGTCGCAGGTTTCCAAGG
ACGCCTCGGGAGGCTTTTTTTCGTTTCGAGACGCGGGTAGCGAGGTCAAG
GACGGACCGCGAGCCGCGATT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10142:258..928+

>mRNA_D-dudresnayi_contig10142.186.1 ID=mRNA_D-dudresnayi_contig10142.186.1|Name=mRNA_D-dudresnayi_contig10142.186.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at D-dudresnayi_contig10142:258..928+ (Desmarestia dudresnayi DdudBR16 monoicous)
CAGGCGGCGTACTCGTATCCTCAGAAAAACTCCCGGAAAATTCTTCCTCC
GAGAAAGATTCCGACGAAGACGATATACTATCTACCAGATGAGGTTTTCC
ACCACCTAGGGATGCCTTGCGTTGTGGAACGCCCCCTCCCCCCGGCGGTC
TCGAAGACAAAGAACGCCTGCTGGAGACACGAGCTTTTCCGGCACTCCCA
ATCGGCGAACGTTCCTCGGACAACGACGCAGCTGCAGAATTTTTTTCTTC
TGATTCTTCTTCGTCGTCAGAGAAGAAAGAAATGTCCTCATCAGAAATTC
CCTCCTCGTCATCTCCATCCAAGCCTTCTTCATCCAAATCTTCATCCTGT
GTGGAGGTGACAGGCGGCGTACTCGTATCCTCAGAAAAACTCCCGGAAAA
TTCTTCCTCCGAGAAAGATTCCGACGAAGACGATATACTATCTACCAGAT
GAGGTTTTCCACCACCTAGGGATGCCTTGCGTTGTGGAACGCCCCCTCCC
CCCGGCGGTCTCGAAGACAAAGAACGCCTGCTGGAGACACGAGCTTTTCC
GGCACTCCCAATCGGCGAACGTTCCTCGGACAACGACGCAGCTGCAGAAT
TTTTTTCTTCTGATTCTTCTTCGTCGTCAGAGAAGAAAGAAATGTCCTCA
TCAGAAATTCCCTCCTCGTCATCTCCATCCAAGCCTTCTTCATCCAAATC
TTCATCCTGTGTGGAGGTGA
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