mRNA_D-dudresnayi_contig10141.184.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10141.184.1
Unique NamemRNA_D-dudresnayi_contig10141.184.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10141.184.1 vs. uniprot
Match: D7FZF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF6_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 4.180e-41
Identity = 84/123 (68.29%), Postives = 96/123 (78.05%), Query Frame = 3 
Query:    3 FERALEGMGRQEGGQEGIWSYLPLFLQMLRDGSARSGAEAGDRFDKLLR----VVVQNRRADSTEDYLNVARDCCTLLRKS-TPASG-GSSKISSKTVLARLGPLPVKP-----DARSSSPVP 338
            FERALEGMGRQEGG+EG+WSYLPLFLQMLRDGS +SGAE GDRFDKLLR    VVVQNRRADSTEDYLN+ARDCCT LRK  TP +   SS+++S+   +   PL   P     D+RS+SPVP
Sbjct:   65 FERALEGMGRQEGGEEGVWSYLPLFLQMLRDGSTKSGAEVGDRFDKLLRELVRVVVQNRRADSTEDYLNIARDCCTHLRKGPTPTTTTASSRMASRLATSSPQPLHSAPSSKTTDSRSASPVP 187
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10141.184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZF6_ECTSI4.180e-4168.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10141contigD-dudresnayi_contig10141:6827..8100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size338
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10141.184.1prot_D-dudresnayi_contig10141.184.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10141 6827..8077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.622481-CDS-D-dudresnayi_contig10141:6826..70151622927514.622481-CDS-D-dudresnayi_contig10141:6826..7015Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10141 6827..7015 -
1690556787.5306518-CDS-D-dudresnayi_contig10141:6826..70151690556787.5306518-CDS-D-dudresnayi_contig10141:6826..7015Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10141 6827..7015 -
1622927514.6389525-CDS-D-dudresnayi_contig10141:7441..75431622927514.6389525-CDS-D-dudresnayi_contig10141:7441..7543Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10141 7442..7543 -
1690556787.5392594-CDS-D-dudresnayi_contig10141:7441..75431690556787.5392594-CDS-D-dudresnayi_contig10141:7441..7543Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10141 7442..7543 -
1622927514.6518538-CDS-D-dudresnayi_contig10141:8053..80771622927514.6518538-CDS-D-dudresnayi_contig10141:8053..8077Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10141 8054..8077 -
1690556787.5482595-CDS-D-dudresnayi_contig10141:8053..80771690556787.5482595-CDS-D-dudresnayi_contig10141:8053..8077Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10141 8054..8077 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.6670835-UTR-D-dudresnayi_contig10141:8077..81001622927514.6670835-UTR-D-dudresnayi_contig10141:8077..8100Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10141 8078..8100 -
1690556787.5583863-UTR-D-dudresnayi_contig10141:8077..81001690556787.5583863-UTR-D-dudresnayi_contig10141:8077..8100Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10141 8078..8100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10141.184.1

>prot_D-dudresnayi_contig10141.184.1 ID=prot_D-dudresnayi_contig10141.184.1|Name=mRNA_D-dudresnayi_contig10141.184.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=105bp
MGRQEGGQEGIWSYLPLFLQMLRDGSARSGAEAGDRFDKLLRVVVQNRRA
DSTEDYLNVARDCCTLLRKSTPASGGSSKISSKTVLARLGPLPVKPDARS
SSPVP
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mRNA from alignment at D-dudresnayi_contig10141:6827..8100-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10141.184.1 ID=mRNA_D-dudresnayi_contig10141.184.1|Name=mRNA_D-dudresnayi_contig10141.184.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1274bp|location=Sequence derived from alignment at D-dudresnayi_contig10141:6827..8100- (Desmarestia dudresnayi DdudBR16 monoicous)
CCTTCGAGCGAGCCCTAGAGGGCATGGGCCGGCAAGAAGGAGGCCAGGTA
TGTCCTACTGACAGTGCAGCGGTAGTACGTGTAAGAATTGCCGACGGCAA
CAGTAGTCGCAAGTACTACTGTTGTAGCACGGATCATAGTATTATGCAGA
CCGTACAGTACTTGCGACACGATGGTATCTGGGGTAGGTTGTTGCGTCGT
GCCCTCTCAAGCAAAGCTTGACCCGTTGGAACCTCTGCCTCGTCGAGGGC
TCATCGCGTGGCTTACTCGCATGGCCGGGTTGATTGCGCGACGTCTACGC
ACAGTAGTAGCGGACCAGATGCGATTCTGTTCCCTTCTCTCGCCTTGGTC
CGTGACATCGTGAGATGGGCTACACATCTATGTGTATCATATTATTCGTC
TATACTTTGCCACGCCCACCTTGTTGCTGTTCGTATTTTGCCGTAGTAGT
GCGACGGAGGTATCCTATGAAAACCTTTAGAAACATTTCTAACAAAGCGT
GTGTTTGCTTCGCCGGGCGCTTCCGTTCGTGCTGCTTGCTGTTCGCTGGG
AGAACAGGAAGGCATATGGTCGTACCTCCCTCTGTTTCTGCAGATGCTCC
GCGACGGCAGCGCACGGTCCGGAGCGGAGGCCGGGGATCGTTTCGACAAG
CTCCTCAGGGTAAGCACTTCAGTCGGTACGCACTCGCACATACACCCCCT
TCCTTGCTCTCTATCATGTCGTTCCTCCGTGCACCCACTCTAGTCTGAAC
TCCAGACTACGATTTGCACAATTACTCGCGTGATAAGAGCCGTGGGGCGA
GTGTGGTGGTGAGTACATGCATGCTGTGCGGGCATTCGGCGGGTCTGCCC
GCAACGGTCACCGCGCGCTATGAAAGGAGCTTGTTTACGGGTCCAGGTGT
TTCGTTCGGCGTTTAATTTTTAAGCCGCGAGAGACCCATGCCTTCACGCA
TTCACAAGTACGGCTCGCACTATGGCGTGATGGTCCAGATAGATACGCGG
CCAGTGACCCTATCCTACACGATAGGAAAATATCTGCTGCAAACAAGCAA
CTCACCCGCCCCTCCCCCCCCGCCGCCCTCGCCAGGTGGTGGTCCAAAAT
CGTAGAGCAGATTCGACGGAAGACTACCTGAACGTAGCGCGGGACTGTTG
CACTCTCCTCCGAAAGTCAACGCCCGCCTCGGGTGGCTCCTCCAAGATTT
CCTCGAAGACCGTTCTCGCAAGATTGGGCCCGCTGCCCGTCAAGCCTGAC
GCACGCTCGTCGTCTCCCGTGCCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10141:6827..8100-

>mRNA_D-dudresnayi_contig10141.184.1 ID=mRNA_D-dudresnayi_contig10141.184.1|Name=mRNA_D-dudresnayi_contig10141.184.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at D-dudresnayi_contig10141:6827..8100- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGGCCGGCAAGAAGGAGGCCAGATGGGCCGGCAAGAAGGAGGCCAGGA
AGGCATATGGTCGTACCTCCCTCTGTTTCTGCAGATGCTCCGCGACGGCA
GCGCACGGTCCGGAGCGGAGGCCGGGGATCGTTTCGACAAGCTCCTCAGG
GAAGGCATATGGTCGTACCTCCCTCTGTTTCTGCAGATGCTCCGCGACGG
CAGCGCACGGTCCGGAGCGGAGGCCGGGGATCGTTTCGACAAGCTCCTCA
GGGTGGTGGTCCAAAATCGTAGAGCAGATTCGACGGAAGACTACCTGAAC
GTAGCGCGGGACTGTTGCACTCTCCTCCGAAAGTCAACGCCCGCCTCGGG
TGGCTCCTCCAAGATTTCCTCGAAGACCGTTCTCGCAAGATTGGGCCCGC
TGCCCGTCAAGCCTGACGCACGCTCGTCGTCTCCCGTGCCGGTGGTGGTC
CAAAATCGTAGAGCAGATTCGACGGAAGACTACCTGAACGTAGCGCGGGA
CTGTTGCACTCTCCTCCGAAAGTCAACGCCCGCCTCGGGTGGCTCCTCCA
AGATTTCCTCGAAGACCGTTCTCGCAAGATTGGGCCCGCTGCCCGTCAAG
CCTGACGCACGCTCGTCGTCTCCCGTGCCG
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