mRNA_D-dudresnayi_contig10139.180.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10139.180.1
Unique NamemRNA_D-dudresnayi_contig10139.180.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10139.180.1 vs. uniprot
Match: A0A1V9YF08_9STRA (Malonyl-CoA decarboxylase (MCD) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YF08_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.610e-37
Identity = 87/205 (42.44%), Postives = 127/205 (61.95%), Query Frame = 1
Query:   13 QDLNKSVGGITTAMQLRTDI-QKLSD--TSISN---ASLSRLDECIQDWLSIVFCVDSLSLEHITFD-SSGTTLERIARSDTVHAVRSISSLKKRLHNGRRCYALVHHALPNYPLAFIHVALTSQLANSMSCIRLFLFSSLDSLNDRVAPSHAMFYSVNSTSPAFRGLSLAPHLIKEVVRDLQLTCPGIRVFSTLSPIPNFMKWL 606
            Q L++   G+   +QLR D+ Q LS   T++      +L  LD  +Q +L+  F V  LSLE +T++ SSG  LE+I R + VH V +I  LK+RL NGRRCYA  H ++P+ PL F+HVAL  ++A+ M+ I+       ++L        A+FYS++ST P  +G+ L  +LIKEV + LQ+  P I ++STLSPIP F+KWL
Sbjct:  161 QILSQLPNGMLFLVQLRADVRQTLSKGHTTLPKNDLVALRALDGHLQTFLAAWFAVGFLSLERVTYERSSGALLEKIIRYEAVHPVGTIIELKRRLGNGRRCYAFFHPSVPDEPLVFVHVALVPEMASGMAYIK----EQTEALEHEHDAHAAIFYSISSTQPGLQGVDLGNYLIKEVAQRLQIELPNISLYSTLSPIPGFIKWL 361          
BLAST of mRNA_D-dudresnayi_contig10139.180.1 vs. uniprot
Match: A0A1W0ABP8_9STRA (Malonyl-CoA decarboxylase (MCD) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABP8_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.830e-36
Identity = 88/205 (42.93%), Postives = 122/205 (59.51%), Query Frame = 1
Query:   13 QDLNKSVGGITTAMQLRTDI-QKLSD---TSISN--ASLSRLDECIQDWLSIVFCVDSLSLEHITFD-SSGTTLERIARSDTVHAVRSISSLKKRLHNGRRCYALVHHALPNYPLAFIHVALTSQLANSMSCIRLFLFSSLDSLNDRVAPSHAMFYSVNSTSPAFRGLSLAPHLIKEVVRDLQLTCPGIRVFSTLSPIPNFMKWL 606
            Q L++   G+   +QLR D+ Q LS    T + N   +L  LD  +Q +L+  F V  LSLE +T++ SSG  LE+I R + VH V +I  LK+RL  GRRCYA  H ++P  PL F+HVAL  +LA+SM  I+       + L        A+FYS++ST P  +G+ L  +LIKEV + LQ   P + ++STLSPIP F KWL
Sbjct:  169 QVLSQLPNGMLFLVQLRADVRQTLSKGHTTLLKNELVALRALDSELQTFLAAWFSVGFLSLERVTYERSSGALLEKIIRYEAVHPVGTIIELKRRLGRGRRCYAFFHPSVPEEPLVFVHVALVPELASSMGYIK----EQTEVLEHEHDAKAAIFYSISSTQPGLQGVDLGNYLIKEVAKRLQEELPNVSLYSTLSPIPGFTKWL 369          
BLAST of mRNA_D-dudresnayi_contig10139.180.1 vs. uniprot
Match: A0A7S0T071_9STRA (Hypothetical protein n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0T071_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.840e-36
Identity = 77/160 (48.12%), Postives = 102/160 (63.75%), Query Frame = 1
Query:  130 IQDWLSIVFCVDSLSLEHITFD-SSGTTLERIARSDTVHAVRSISSLKKRLHNGRRCYALVHHALPNYPLAFIHVALTSQLANSMSCIRLFLFSSLDSLNDRVAPSHAMFYSVNSTSPAFRGLSLAPHLIKEVVRDLQLTCPGIRVFSTLSPIPNFMKWL 606
            I  WLS +   D+L L  I+FD SSG+ LE++A+ D+V  +RSI  LK+RL  GRRCYA  H  L N PLAFIH+ALT  LA S+S I        +S +   +P+HAMFYSV+S   A  G  L   LIKE   +++ + P +RVF TLSP+P+F+ WL
Sbjct:   16 INIWLSAMISSDNLILNQISFDKSSGSMLEKVAQGDSVRKIRSIRELKRRLSEGRRCYAYFHPCLINEPLAFIHIALTPILATSLSII--------NSKSTDKSPTHAMFYSVDSPIQALSGFDLGVRLIKESKNEIKKSYPTVRVFCTLSPLPSFLTWL 167          
BLAST of mRNA_D-dudresnayi_contig10139.180.1 vs. uniprot
Match: A0A485KMW5_9STRA (Aste57867_9318 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KMW5_9STRA)

HSP 1 Score: 141 bits (356), Expect = 3.820e-36
Identity = 82/205 (40.00%), Postives = 123/205 (60.00%), Query Frame = 1
Query:   13 QDLNKSVGGITTAMQLRTDIQKL------SDTSISNASLSRLDECIQDWLSIVFCVDSLSLEHITFDSS-GTTLERIARSDTVHAVRSISSLKKRLHNGRRCYALVHHALPNYPLAFIHVALTSQLANSMSCIRLFLFSSLDSLNDRVAPSHAMFYSVNSTSPAFRGLSLAPHLIKEVVRDLQLTCPGIRVFSTLSPIPNFMKWL 606
            Q L++  GG+   + LR D++ +      +D    N +L  LD  +Q +L+  F V  L LE +T++ S G  LE+I R + VH V +I  LK+RL + RRC+A  H ++P+ PL F+HVAL  +LA SM+ I+     + + L D      A+FYS++ST P  +G+ L  +LIK+V + LQ   P I ++STLSPIP F+KWL
Sbjct:  170 QILSQMDGGMLFLVHLRADVRAVLNKMSPTDERNDNVALRDLDHHLQTFLAGWFSVGFLHLERVTYEHSPGALLEKIIRYEAVHPVGTIIELKRRLGHARRCFAFFHPSVPDEPLVFVHVALVKELAASMTYIK----EATEHLEDEHDARAAIFYSISSTQPGLQGVDLGNYLIKQVAKRLQHEMPNISIYSTLSPIPGFIKWL 370          
BLAST of mRNA_D-dudresnayi_contig10139.180.1 vs. uniprot
Match: A0A6G0XC62_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XC62_9STRA)

HSP 1 Score: 141 bits (356), Expect = 4.250e-36
Identity = 85/203 (41.87%), Postives = 121/203 (59.61%), Query Frame = 1
Query:   19 LNKSVGGITTAMQLRTDIQKLSD--TSISNAS----LSRLDECIQDWLSIVFCVDSLSLEHITFDSS-GTTLERIARSDTVHAVRSISSLKKRLHNGRRCYALVHHALPNYPLAFIHVALTSQLANSMSCIRLFLFSSLDSLNDRVAPSHAMFYSVNSTSPAFRGLSLAPHLIKEVVRDLQLTCPGIRVFSTLSPIPNFMKWL 606
            L++  GG+   + LR DI+++ +  TS  N +    L  LD+ +Q +L+  F V  L LE +T+D S G  LE+I R + VH V +I  LK+RL N RRC+A  H ++P+ PL F+HVAL  +LA SM  I+       + L        A+FYS++ST P  +G+ L  +LIK+V + LQ   P I +FSTLSPIP F KWL
Sbjct:  172 LSQMDGGMLFLVHLRADIRQVLNKMTSSDNRNDVVVLRALDQHLQTFLAGWFSVGFLCLERVTYDHSPGALLEKIIRYEAVHPVGTIIELKRRLGNARRCFAFFHPSIPDEPLVFVHVALVKELAGSMEYIK----EETEHLEHEHDAKAAIFYSISSTQPGLQGVDLGNYLIKQVAKRLQHELPNIELFSTLSPIPGFTKWL 370          
BLAST of mRNA_D-dudresnayi_contig10139.180.1 vs. uniprot
Match: A0A067CKQ6_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CKQ6_SAPPC)

HSP 1 Score: 140 bits (354), Expect = 6.040e-36
Identity = 83/205 (40.49%), Postives = 123/205 (60.00%), Query Frame = 1
Query:   13 QDLNKSVGGITTAMQLRTDI-QKLSDTSISNA-----SLSRLDECIQDWLSIVFCVDSLSLEHITFDSS-GTTLERIARSDTVHAVRSISSLKKRLHNGRRCYALVHHALPNYPLAFIHVALTSQLANSMSCIRLFLFSSLDSLNDRVAPSHAMFYSVNSTSPAFRGLSLAPHLIKEVVRDLQLTCPGIRVFSTLSPIPNFMKWL 606
            Q L++   G+   +QLR D+ Q L+ T  ++A     +L  LD  +Q +L+  F V  LSLE +T++ S G  LE+I R + VH V +I  LK+RL  GRRCYA  H ++P+ PL F+HVAL  ++A  M  I+     + + L        A+FYS++ST P  +G+ L  +LIK+V + LQ   P + ++STLSPIP F+KWL
Sbjct:  157 QILSQLPSGMLFLVQLRADVRQTLAKTHTTSAKNDLVALRALDSQLQTFLAAWFAVGFLSLERVTYEHSPGALLEKIIRYEAVHPVGTIIELKRRLGRGRRCYAFFHPSVPDEPLVFVHVALVPEMATGMGYIK----DATEVLEHEHDAHAAIFYSISSTQPGLQGVDLGNYLIKQVAKRLQEELPNVSLYSTLSPIPGFVKWL 357          
BLAST of mRNA_D-dudresnayi_contig10139.180.1 vs. uniprot
Match: G4ZBK9_PHYSP (Putative malonyl-CoA decarboxylase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZBK9_PHYSP)

HSP 1 Score: 137 bits (346), Expect = 3.320e-35
Identity = 78/202 (38.61%), Postives = 121/202 (59.90%), Query Frame = 1
Query:   13 QDLNKSVGGITTAMQLRTDIQKLSDTSISNA---SLSRLDECIQDWLSIVFCVDSLSLEHITFDSS-GTTLERIARSDTVHAVRSISSLKKRLHNGRRCYALVHHALPNYPLAFIHVALTSQLANSMSCIRLFLFSSLDSLNDRVAPSHAMFYSVNSTSPAFRGLSLAPHLIKEVVRDLQLTCPGIRVFSTLSPIPNFMKWL 606
            Q L++   G+   +QLR D+ +L   + ++A   +L  LD  ++ +L+  F V  L LE +T++ S G  LE+I R + VH V +I+ LK+RL NGRRC+A  H ++P+ PL F+H+AL  ++A+SM  IR       + L +      A+FYS++ST     G+ L   LIKEV + L+   P ++ F+TLSP+P FM WL
Sbjct:   77 QILSQRENGMLFLVQLRADLLQLLRKNANHAEIPALRSLDASLKQFLASWFSVGFLKLERVTYEHSPGQLLEKIIRYEAVHPVGTIAELKRRLGNGRRCFAFFHPSIPDEPLVFVHIALMQEIASSMQSIR----DETEQLAEASQAKAAIFYSISSTQKGLSGVDLGNFLIKEVAKALKTEYPHLKTFATLSPLPQFMPWL 274          
BLAST of mRNA_D-dudresnayi_contig10139.180.1 vs. uniprot
Match: D0N7D8_PHYIT (Malonyl-CoA decarboxylase (MCD), putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N7D8_PHYIT)

HSP 1 Score: 136 bits (342), Expect = 1.390e-34
Identity = 77/202 (38.12%), Postives = 121/202 (59.90%), Query Frame = 1
Query:   13 QDLNKSVGGITTAMQLRTDIQKLSDTSISNASLSRL---DECIQDWLSIVFCVDSLSLEHITFDSS-GTTLERIARSDTVHAVRSISSLKKRLHNGRRCYALVHHALPNYPLAFIHVALTSQLANSMSCIRLFLFSSLDSLNDRVAPSHAMFYSVNSTSPAFRGLSLAPHLIKEVVRDLQLTCPGIRVFSTLSPIPNFMKWL 606
            Q L++   G+   + +R D+ ++   S S++ +  L   D  ++ +L+  F V  L LE +T++ S G  LE+I R + VH V +I+ LK+RL NGRRC+A  H ++P+ PL F+HVAL  ++A+SM  IR       + L D    + A+FYS++ST     G+ L   LIKEV + L+   P +++F+TLSP+P FM WL
Sbjct:   77 QILSQRENGMLFLVHMRADLLQVLRKSASHSEIPALRSFDASLKQFLASWFSVGFLKLERVTYEHSPGQLLEKIIRYEAVHPVGTIAELKRRLGNGRRCFAFFHPSIPDEPLVFVHVALMQEIASSMQSIR----DETEQLADTSQANAAIFYSISSTQKGLAGVDLGNFLIKEVAKALKTEHPRLKMFATLSPLPQFMPWL 274          
BLAST of mRNA_D-dudresnayi_contig10139.180.1 vs. uniprot
Match: A0A0P1A8V1_PLAHL (Malonyl-decarboxylase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8V1_PLAHL)

HSP 1 Score: 138 bits (348), Expect = 2.000e-34
Identity = 78/202 (38.61%), Postives = 117/202 (57.92%), Query Frame = 1
Query:   13 QDLNKSVGGITTAMQLRTDIQKLSDTSISNA---SLSRLDECIQDWLSIVFCVDSLSLEHITFDSS-GTTLERIARSDTVHAVRSISSLKKRLHNGRRCYALVHHALPNYPLAFIHVALTSQLANSMSCIRLFLFSSLDSLNDRVAPSHAMFYSVNSTSPAFRGLSLAPHLIKEVVRDLQLTCPGIRVFSTLSPIPNFMKWL 606
            Q L++   G+   + +R D+ ++   S S+    SL  LD  ++ +L   F V  L L+ +T++ S G  LE+I R + VH V +I+ LK+RL NGRRC+A  H ++P  PL F+HVAL  ++A SM  IR       +   D      A+FYS++ST     G+ L   LIKEV + L+  CP ++ F+TLSP+P+FM WL
Sbjct:  200 QILSQRENGMLFLVHMRADLLQILRKSASHTETTSLRSLDASLKQYLVSWFGVGFLRLKRVTYEHSPGQLLEKIIRYEAVHPVGTIAELKRRLGNGRRCFAFFHPSIPEEPLVFVHVALMQEMATSMQSIR----DGTEQFGDTSQTKAAIFYSISSTQKGLSGVDLGNFLIKEVAKSLKKECPHLKTFATLSPLPHFMSWL 397          
BLAST of mRNA_D-dudresnayi_contig10139.180.1 vs. uniprot
Match: H3G7K9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7K9_PHYRM)

HSP 1 Score: 133 bits (334), Expect = 3.470e-34
Identity = 75/200 (37.50%), Postives = 120/200 (60.00%), Query Frame = 1
Query:   19 LNKSVGGITTAMQLRTDIQKLSDTSISNA---SLSRLDECIQDWLSIVFCVDSLSLEHITFDSS-GTTLERIARSDTVHAVRSISSLKKRLHNGRRCYALVHHALPNYPLAFIHVALTSQLANSMSCIRLFLFSSLDSLNDRVAPSHAMFYSVNSTSPAFRGLSLAPHLIKEVVRDLQLTCPGIRVFSTLSPIPNFMKWL 606
            L++   G+   + +R D+ ++   + S++   +L  LD  ++ +L+  F V  L LE +T++ S G  LE+I R + VH V +I+ LK+RL NGRRC+A  H ++P+ PL F+HVAL  ++A+SM  IR       + L +      A+FYS++ST     G+ L   LIKEV + L++  P ++ F+TLSP+P FM WL
Sbjct:    1 LSQRENGMLFLVHMRADLLQVLRKNASHSEIPALRSLDAGLKQFLAAWFSVGFLKLERVTYEHSPGQLLEKIIRYEAVHPVGTIAELKRRLGNGRRCFAFFHPSIPDEPLVFVHVALMQEIASSMQSIR----DQTEQLAEASQTKAAIFYSISSTQKGLSGVDLGNFLIKEVAKALKVEYPLLKTFATLSPLPQFMPWL 196          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10139.180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V9YF08_9STRA1.610e-3742.44Malonyl-CoA decarboxylase (MCD) n=1 Tax=Achlya hyp... [more]
A0A1W0ABP8_9STRA1.830e-3642.93Malonyl-CoA decarboxylase (MCD) n=1 Tax=Thraustoth... [more]
A0A7S0T071_9STRA1.840e-3648.13Hypothetical protein n=2 Tax=Chromulina nebulosa T... [more]
A0A485KMW5_9STRA3.820e-3640.00Aste57867_9318 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0XC62_9STRA4.250e-3641.87Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067CKQ6_SAPPC6.040e-3640.49Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
G4ZBK9_PHYSP3.320e-3538.61Putative malonyl-CoA decarboxylase n=1 Tax=Phytoph... [more]
D0N7D8_PHYIT1.390e-3438.12Malonyl-CoA decarboxylase (MCD), putative n=1 Tax=... [more]
A0A0P1A8V1_PLAHL2.000e-3438.61Malonyl-decarboxylase n=1 Tax=Plasmopara halstedii... [more]
H3G7K9_PHYRM3.470e-3437.50Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10139contigD-dudresnayi_contig10139:9794..10682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.7
Seed ortholog evalue3e-33
Seed eggNOG ortholog157072.XP_008863377.1
Preferred nameMLYCD
KEGG rclassRC00040,RC00561
KEGG koko:K00454,ko:K01578,ko:K18663
KEGG ReactionR00233,R03626,R07864,R07869
KEGG Pathwayko00410,ko00591,ko00592,ko00640,ko01100,ko01110,ko04146,ko04152,map00410,map00591,map00592,map00640,map01100,map01110,map04146,map04152
KEGG ModuleM00113
GOsGO:0002931,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005782,GO:0005829,GO:0006082,GO:0006084,GO:0006085,GO:0006109,GO:0006139,GO:0006163,GO:0006164,GO:0006195,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009154,GO:0009165,GO:0009166,GO:0009259,GO:0009260,GO:0009261,GO:0009893,GO:0009894,GO:0009987,GO:0010565,GO:0010675,GO:0010906,GO:0015031,GO:0015833,GO:0016043,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019216,GO:0019217,GO:0019222,GO:0019395,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0030258,GO:0031323,GO:0031325,GO:0031329,GO:0031907,GO:0031974,GO:0031998,GO:0032787,GO:0033036,GO:0033365,GO:0033865,GO:0033866,GO:0033869,GO:0033875,GO:0034030,GO:0034031,GO:0034032,GO:0034033,GO:0034034,GO:0034404,GO:0034440,GO:0034613,GO:0034641,GO:0034654,GO:0034655,GO:0035383,GO:0035384,GO:0042579,GO:0042802,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044270,GO:0044271,GO:0044272,GO:0044273,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045834,GO:0045923,GO:0046320,GO:0046321,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048522,GO:0050080,GO:0050789,GO:0050794,GO:0050896,GO:0050994,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051641,GO:0051649,GO:0055086,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0070727,GO:0071616,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072330,GO:0072521,GO:0072522,GO:0072523,GO:0072594,GO:0072662,GO:0072663,GO:0080090,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:2001293,GO:2001294
EggNOG free text desc.malonyl-CoA decarboxylase activity
EggNOG OGsCOG1593@1,KOG3018@2759
EC1.13.11.12,3.6.4.12,4.1.1.9
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size606
Cds size606
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10139.180.1prot_D-dudresnayi_contig10139.180.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10139 9794..10682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.3340356-CDS-D-dudresnayi_contig10139:9793..99121622927514.3340356-CDS-D-dudresnayi_contig10139:9793..9912Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10139 9794..9912 -
1690556787.3877187-CDS-D-dudresnayi_contig10139:9793..99121690556787.3877187-CDS-D-dudresnayi_contig10139:9793..9912Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10139 9794..9912 -
1622927514.3502955-CDS-D-dudresnayi_contig10139:10146..102501622927514.3502955-CDS-D-dudresnayi_contig10139:10146..10250Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10139 10147..10250 -
1690556787.3985317-CDS-D-dudresnayi_contig10139:10146..102501690556787.3985317-CDS-D-dudresnayi_contig10139:10146..10250Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10139 10147..10250 -
1622927514.3630495-CDS-D-dudresnayi_contig10139:10299..106821622927514.3630495-CDS-D-dudresnayi_contig10139:10299..10682Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10139 10300..10682 -
1690556787.4065578-CDS-D-dudresnayi_contig10139:10299..106821690556787.4065578-CDS-D-dudresnayi_contig10139:10299..10682Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10139 10300..10682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10139.180.1

>prot_D-dudresnayi_contig10139.180.1 ID=prot_D-dudresnayi_contig10139.180.1|Name=mRNA_D-dudresnayi_contig10139.180.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=202bp
QAIAQDLNKSVGGITTAMQLRTDIQKLSDTSISNASLSRLDECIQDWLSI
VFCVDSLSLEHITFDSSGTTLERIARSDTVHAVRSISSLKKRLHNGRRCY
ALVHHALPNYPLAFIHVALTSQLANSMSCIRLFLFSSLDSLNDRVAPSHA
MFYSVNSTSPAFRGLSLAPHLIKEVVRDLQLTCPGIRVFSTLSPIPNFMK
WL
back to top

mRNA from alignment at D-dudresnayi_contig10139:9794..10682-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10139.180.1 ID=mRNA_D-dudresnayi_contig10139.180.1|Name=mRNA_D-dudresnayi_contig10139.180.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=889bp|location=Sequence derived from alignment at D-dudresnayi_contig10139:9794..10682- (Desmarestia dudresnayi DdudBR16 monoicous)
CAAGCAATTGCTCAAGATTTGAACAAATCTGTAGGTGGTATAACTACAGC AATGCAGTTAAGAACCGATATTCAGAAGCTATCTGATACCTCTATTAGCA ATGCCAGTTTGAGTAGGCTAGATGAATGCATTCAAGATTGGCTGTCTATT GTATTTTGTGTAGACTCATTGTCTTTAGAACATATTACCTTTGATTCAAG TGGTACAACTTTAGAAAGAATTGCTCGTTCTGATACTGTTCATGCAGTAC GTTCCATATCTTCATTGAAGAAAAGACTTCATAATGGTCGCAGATGCTAT GCACTAGTCCATCACGCTTTACCAAATTATCCACTAGCATTTATTCATGT TGCACTAACTTCACAATTAGCTAACTCTATGAGGTATGGGTTATATTCAA CATATTTATTTTATATATTTCAATCATATAAGCTGTATACGACTGTTTTT ATTCAGTTCATTGGACAGTCTGAATGATCGCGTTGCTCCGTCTCATGCTA TGTTCTACTCTGTCAACTCTACCAGCCCTGCTTTTCGTAAGTCATTTACA AGACTTTTTATAATATTATATAGTTATTAAGCATATTTTCAGTGTATTTA CTGGATTATATTATTACTACTTTGTATGCATGTATGTATGATGTTTACTA CAGTATACGTATCAACAATGTATCATACTATACTATATTATACCACACTA TATGTATATTATGATATATAATATATCTAATACATCAACAATATTTATAC TATACTATACTACATTATAGGTGGCCTCTCCCTCGCTCCGCACCTCATCA AGGAGGTGGTGCGGGACCTGCAGCTCACCTGTCCGGGGATCAGAGTCTTC TCCACTCTCTCGCCCATCCCCAACTTCATGAAATGGTTA
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10139:9794..10682-

>mRNA_D-dudresnayi_contig10139.180.1 ID=mRNA_D-dudresnayi_contig10139.180.1|Name=mRNA_D-dudresnayi_contig10139.180.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at D-dudresnayi_contig10139:9794..10682- (Desmarestia dudresnayi DdudBR16 monoicous)
CAAGCAATTGCTCAAGATTTGAACAAATCTGTAGGTGGTATAACTACAGC
AATGCAGTTAAGAACCGATATTCAGAAGCTATCTGATACCTCTATTAGCA
ATGCCAGTTTGAGTAGGCTAGATGAATGCATTCAAGATTGGCTGTCTATT
GTATTTTGTGTAGACTCATTGTCTTTAGAACATATTACCTTTGATTCAAG
TGGTACAACTTTAGAAAGAATTGCTCGTTCTGATACTGTTCATGCAGTAC
GTTCCATATCTTCATTGAAGAAAAGACTTCATAATGGTCGCAGATGCTAT
GCACTAGTCCATCACGCTTTACCAAATTATCCACTAGCATTTATTCATGT
TGCACTAACTTCACAATTAGCTAACTCTATGAGCAAGCAATTGCTCAAGA
TTTGAACAAATCTGTAGGTGGTATAACTACAGCAATGCAGTTAAGAACCG
ATATTCAGAAGCTATCTGATACCTCTATTAGCAATGCCAGTTTGAGTAGG
CTAGATGAATGCATTCAAGATTGGCTGTCTATTGTATTTTGTGTAGACTC
ATTGTCTTTAGAACATATTACCTTTGATTCAAGTGGTACAACTTTAGAAA
GAATTGCTCGTTCTGATACTGTTCATGCAGTACGTTCCATATCTTCATTG
AAGAAAAGACTTCATAATGGTCGCAGATGCTATGCACTAGTCCATCACGC
TTTACCAAATTATCCACTAGCATTTATTCATGTTGCACTAACTTCACAAT
TAGCTAACTCTATGAGCTGTATACGACTGTTTTTATTCAGTTCATTGGAC
AGTCTGAATGATCGCGTTGCTCCGTCTCATGCTATGTTCTACTCTGTCAA
CTCTACCAGCCCTGCTTTTCCTGTATACGACTGTTTTTATTCAGTTCATT
GGACAGTCTGAATGATCGCGTTGCTCCGTCTCATGCTATGTTCTACTCTG
TCAACTCTACCAGCCCTGCTTTTCGTGGCCTCTCCCTCGCTCCGCACCTC
ATCAAGGAGGTGGTGCGGGACCTGCAGCTCACCTGTCCGGGGATCAGAGT
CTTCTCCACTCTCTCGCCCATCCCCAACTTCATGAAATGGTTAGTGGCCT
CTCCCTCGCTCCGCACCTCATCAAGGAGGTGGTGCGGGACCTGCAGCTCA
CCTGTCCGGGGATCAGAGTCTTCTCCACTCTCTCGCCCATCCCCAACTTC
ATGAAATGGTTA
back to top