mRNA_D-dudresnayi_contig10135.173.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10135.173.1
Unique NamemRNA_D-dudresnayi_contig10135.173.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10135.173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10135contigD-dudresnayi_contig10135:10513..10920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size410
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927513.7738025-CDS-D-dudresnayi_contig10135:10512..108151622927513.7738025-CDS-D-dudresnayi_contig10135:10512..10815Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10135 10513..10815 +
1690556787.1590002-CDS-D-dudresnayi_contig10135:10512..108151690556787.1590002-CDS-D-dudresnayi_contig10135:10512..10815Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10135 10513..10815 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927513.7850852-UTR-D-dudresnayi_contig10135:10815..109201622927513.7850852-UTR-D-dudresnayi_contig10135:10815..10920Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10135 10816..10920 +
1690556787.1711738-UTR-D-dudresnayi_contig10135:10815..109201690556787.1711738-UTR-D-dudresnayi_contig10135:10815..10920Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10135 10816..10920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10135.173.1prot_D-dudresnayi_contig10135.173.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10135 10513..10815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10135.173.1

>prot_D-dudresnayi_contig10135.173.1 ID=prot_D-dudresnayi_contig10135.173.1|Name=mRNA_D-dudresnayi_contig10135.173.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=101bp
TCLNLPALFVSNNVYLNKQFTNYTWTNSISTVTPLVKLIFTWYPATARPS
LVNKHGCVSPFLHTSNCALTRAVAVGKEHSSTRRPTKNVETRPINRGPML
*
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mRNA from alignment at D-dudresnayi_contig10135:10513..10920+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10135.173.1 ID=mRNA_D-dudresnayi_contig10135.173.1|Name=mRNA_D-dudresnayi_contig10135.173.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at D-dudresnayi_contig10135:10513..10920+ (Desmarestia dudresnayi DdudBR16 monoicous)
ACTTGCCTCAACCTTCCAGCGCTATTCGTCTCAAACAACGTGTACCTCAA
TAAACAATTTACAAACTACACCTGGACAAACAGTATAAGCACAGTTACCC
CTCTAGTGAAGCTTATCTTCACATGGTACCCTGCTACTGCGCGTCCATCC
CTTGTAAATAAACACGGATGCGTTTCCCCCTTCCTACATACTTCGAACTG
TGCTTTAACTCGAGCTGTGGCCGTGGGTAAGGAGCATTCCTCGACCCGCA
GACCCACAAAGAACGTGGAGACCCGACCCATAAACCGCGGTCCCATGCTC
TAGCAACGAACGTGGAAACCTGGCCCATAATACCGCGGCCCCACGTTCCA
CCATAACAAAGAAACGTCAAAACCCCGGCCCACAATACCGCGGTTCCACG
CTTCCACA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10135:10513..10920+

>mRNA_D-dudresnayi_contig10135.173.1 ID=mRNA_D-dudresnayi_contig10135.173.1|Name=mRNA_D-dudresnayi_contig10135.173.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at D-dudresnayi_contig10135:10513..10920+ (Desmarestia dudresnayi DdudBR16 monoicous)
ACTTGCCTCAACCTTCCAGCGCTATTCGTCTCAAACAACGTGTACCTCAA
TAAACAATTTACAAACTACACCTGGACAAACAGTATAAGCACAGTTACCC
CTCTAGTGAAGCTTATCTTCACATGGTACCCTGCTACTGCGCGTCCATCC
CTTGTAAATAAACACGGATGCGTTTCCCCCTTCCTACATACTTCGAACTG
TGCTTTAACTCGAGCTGTGGCCGTGGGTAAGGAGCATTCCTCGACCCGCA
GACCCACAAAGAACGTGGAGACCCGACCCATAAACCGCGGTCCCATGCTC
TAGACTTGCCTCAACCTTCCAGCGCTATTCGTCTCAAACAACGTGTACCT
CAATAAACAATTTACAAACTACACCTGGACAAACAGTATAAGCACAGTTA
CCCCTCTAGTGAAGCTTATCTTCACATGGTACCCTGCTACTGCGCGTCCA
TCCCTTGTAAATAAACACGGATGCGTTTCCCCCTTCCTACATACTTCGAA
CTGTGCTTTAACTCGAGCTGTGGCCGTGGGTAAGGAGCATTCCTCGACCC
GCAGACCCACAAAGAACGTGGAGACCCGACCCATAAACCGCGGTCCCATG
CTCTAG
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