mRNA_D-dudresnayi_contig10135.172.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10135.172.1
Unique NamemRNA_D-dudresnayi_contig10135.172.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10135.172.1 vs. uniprot
Match: A0A4Y2R182_ARAVE (Uncharacterized protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2R182_ARAVE)

HSP 1 Score: 62.8 bits (151), Expect = 2.260e-9
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   22 ERWLADSGASYHMTSSADSVVDVQ--PSNDKVRIGNDSLIVIESYGNLTVNFPRQEEGGWTAR-LDKVVYVPDLAINLVSLEASHKKGVGF 285
            E+W+ADSGAS HMTS     +D +  PS+  V +GN++ I++  YG  TVNF     G W    L +V YVPD++ NL S+  +  KG  F
Sbjct:   65 EQWIADSGASAHMTSYRKYFLDFKDFPSSKPVYVGNNNAIMV--YGQGTVNFDMNVNGKWVNNHLSEVWYVPDVSRNLFSVSQTLAKGFVF 153          
BLAST of mRNA_D-dudresnayi_contig10135.172.1 vs. uniprot
Match: A0A0V1HEX2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1HEX2_9BILA)

HSP 1 Score: 61.2 bits (147), Expect = 8.960e-9
Identity = 42/91 (46.15%), Postives = 53/91 (58.24%), Query Frame = 1
Query:   28 WLADSGASYHMTSS----ADSVVDVQPSNDKVRIGNDSLIVIESYGNLTVNFPRQEEGGWTA-RLDKVVYVPDLAINLVSLEASHKKGVGF 285
            WLADSGAS HMT +    AD V   QP N  V+IGN   I +  +G  TVNF    +G W   R++ V YVP L +NL S+E + +KG  F
Sbjct:  151 WLADSGASQHMTRNKEYLADFVTFPQPVN--VKIGNGDAIPVYGWG--TVNFKVFIKGKWILNRMEVVWYVPKLGLNLFSIEKAAEKGFNF 237          
BLAST of mRNA_D-dudresnayi_contig10135.172.1 vs. uniprot
Match: A0A4Y2SNE9_ARAVE (CCHC-type domain-containing protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2SNE9_ARAVE)

HSP 1 Score: 59.7 bits (143), Expect = 2.120e-8
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   22 ERWLADSGASYHMTSSADSVVDVQ--PSNDKVRIGNDSLIVIESYGNLTVNFPRQEEGGWTAR-LDKVVYVPDLAINLVSLEASHKKGVGF 285
            E+W+ADSGAS HMTS     +D +  PS   V +GN++ I+  +YG  TVN   +  G W +  L +V YVPD++ NL+S+  +  KG  F
Sbjct:  101 EQWIADSGASAHMTSYRKYFLDFKEFPSPKPVNVGNNNAIM--AYGQGTVNVDMKVNGKWVSNHLSEVWYVPDVSRNLLSVCQTLAKGFVF 189          
BLAST of mRNA_D-dudresnayi_contig10135.172.1 vs. uniprot
Match: A0A4Y2N6L3_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2N6L3_ARAVE)

HSP 1 Score: 59.7 bits (143), Expect = 3.360e-8
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   22 ERWLADSGASYHMTSSADSVVDVQ--PSNDKVRIGNDSLIVIESYGNLTVNFPRQEEGGWTAR-LDKVVYVPDLAINLVSLEASHKKGVGF 285
            E+W+ADSGAS HMTS     +D +  PS   V +GN++ I+  +YG  TVN   +  G W +  L +V YVPD++ NL S+  +  KG  F
Sbjct:  266 EQWIADSGASAHMTSYRKYFLDFKEFPSPKPVYVGNNNAIM--AYGQGTVNVDMKVNGKWVSNHLSEVWYVPDVSRNLFSVSQTLAKGFVF 354          
BLAST of mRNA_D-dudresnayi_contig10135.172.1 vs. uniprot
Match: A0A0V1M1K0_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Trichinella TaxID=6333 RepID=A0A0V1M1K0_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 3.360e-8
Identity = 41/91 (45.05%), Postives = 51/91 (56.04%), Query Frame = 1
Query:   28 WLADSGASYHMTSS----ADSVVDVQPSNDKVRIGNDSLIVIESYGNLTVNFPRQEEGGWTA-RLDKVVYVPDLAINLVSLEASHKKGVGF 285
            WLADSGAS HMT +    AD V   QP N K+R G+     I +YG  TVNF    +G W   R++ V YVP L +NL S+  +  KG  F
Sbjct:  282 WLADSGASQHMTHNKEYLADFVTFPQPVNVKIRNGD----AIPAYGRGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKAADKGFYF 368          
BLAST of mRNA_D-dudresnayi_contig10135.172.1 vs. uniprot
Match: A0A4Y2MJB6_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2MJB6_ARAVE)

HSP 1 Score: 59.3 bits (142), Expect = 4.090e-8
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 1
Query:   22 ERWLADSGASYHMTSSADSVVDVQ--PSNDKVRIGNDSLIVIESYGNLTVNFPRQEEGGWTAR-LDKVVYVPDLAINLVSLEASHKKGVGF 285
            E+W+ADSGAS HMTS     +D +  PS   V +GN + I+  +YG  TVN   +  G W +  L +V YVPD++ NL S+  +  KG  F
Sbjct:  151 EQWIADSGASAHMTSYRKYFLDFKEFPSPKPVYVGNSNAIM--AYGQGTVNVDMKVNGKWVSNHLSEVWYVPDVSRNLFSVSQTLAKGFVF 239          
BLAST of mRNA_D-dudresnayi_contig10135.172.1 vs. uniprot
Match: A0A4Y2KU41_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2KU41_ARAVE)

HSP 1 Score: 58.2 bits (139), Expect = 1.150e-7
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   22 ERWLADSGASYHMTSSADSVVDVQ--PSNDKVRIGNDSLIVIESYGNLTVNFPRQEEGGWTAR-LDKVVYVPDLAINLVSLEASHKKGVGF 285
            E+W+ADSGAS HMTS     +D +  PS   V +GN++ I+  +YG  TVN   +  G W +  L +V YVPD++ NL S+  +  KG  F
Sbjct:  266 EQWIADSGASAHMTSYRKYFLDFKEFPSPKPVYVGNNNAIM--AYGQGTVNVDMKVNGKWVSNHLSEVWYVPDVSRNLFSVCQTLAKGFVF 354          
BLAST of mRNA_D-dudresnayi_contig10135.172.1 vs. uniprot
Match: A0A0V0WE00_9BILA (Copia protein n=4 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0WE00_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 1.490e-7
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 1
Query:   28 WLADSGASYHMTSSADSVVDVQ--PSNDKVRIGNDSLIVIESYGNLTVNFPRQEEGGWTA-RLDKVVYVPDLAINLVSLEASHKKGVGF 285
            WLADSGAS HMT + + + D    P    V++GN   I   +YG+ TVNF    +G W   R++ V YVP L +NL S+  + +KG  F
Sbjct:  282 WLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAI--PAYGHGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKGFNF 368          
BLAST of mRNA_D-dudresnayi_contig10135.172.1 vs. uniprot
Match: A0A1Y3EJI6_9BILA (Integrase core domain protein n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A1Y3EJI6_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 1.560e-7
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 1
Query:   28 WLADSGASYHMTSSADSVVDVQ--PSNDKVRIGNDSLIVIESYGNLTVNFPRQEEGGWTA-RLDKVVYVPDLAINLVSLEASHKKGVGF 285
            WLADSGAS HMT + + + D    P    V++GN   I   +YG+ TVNF    +G W   R++ V YVP L +NL S+  + +KG  F
Sbjct:   34 WLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAI--PAYGHGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKGFNF 120          
BLAST of mRNA_D-dudresnayi_contig10135.172.1 vs. uniprot
Match: A0A0V0WA51_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0WA51_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 1.570e-7
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 1
Query:   28 WLADSGASYHMTSSADSVVDVQ--PSNDKVRIGNDSLIVIESYGNLTVNFPRQEEGGWTA-RLDKVVYVPDLAINLVSLEASHKKGVGF 285
            WLADSGAS HMT + + + D    P    V++GN   I   +YG+ TVNF    +G W   R++ V YVP L +NL S+  + +KG  F
Sbjct:    2 WLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAI--PAYGHGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKGFNF 88          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10135.172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y2R182_ARAVE2.260e-942.86Uncharacterized protein n=1 Tax=Araneus ventricosu... [more]
A0A0V1HEX2_9BILA8.960e-946.15Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2SNE9_ARAVE2.120e-841.76CCHC-type domain-containing protein n=1 Tax=Araneu... [more]
A0A4Y2N6L3_ARAVE3.360e-841.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1M1K0_9BILA3.360e-845.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2MJB6_ARAVE4.090e-841.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2KU41_ARAVE1.150e-741.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0WE00_9BILA1.490e-741.57Copia protein n=4 Tax=Trichinella sp. T6 TaxID=921... [more]
A0A1Y3EJI6_9BILA1.560e-741.57Integrase core domain protein n=1 Tax=Trichinella ... [more]
A0A0V0WA51_9BILA1.570e-741.57Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10135contigD-dudresnayi_contig10135:4863..5168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927513.822632-CDS-D-dudresnayi_contig10135:4862..51681622927513.822632-CDS-D-dudresnayi_contig10135:4862..5168Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10135 4863..5168 +
1690556787.1806734-CDS-D-dudresnayi_contig10135:4862..51681690556787.1806734-CDS-D-dudresnayi_contig10135:4862..5168Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10135 4863..5168 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10135.172.1prot_D-dudresnayi_contig10135.172.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10135 4863..5168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10135.172.1

>prot_D-dudresnayi_contig10135.172.1 ID=prot_D-dudresnayi_contig10135.172.1|Name=mRNA_D-dudresnayi_contig10135.172.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=102bp
ENGDSSTERWLADSGASYHMTSSADSVVDVQPSNDKVRIGNDSLIVIESY
GNLTVNFPRQEEGGWTARLDKVVYVPDLAINLVSLEASHKKGVGFVIDDT
DM
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mRNA from alignment at D-dudresnayi_contig10135:4863..5168+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10135.172.1 ID=mRNA_D-dudresnayi_contig10135.172.1|Name=mRNA_D-dudresnayi_contig10135.172.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at D-dudresnayi_contig10135:4863..5168+ (Desmarestia dudresnayi DdudBR16 monoicous)
GAGAATGGCGATAGTAGTACAGAGAGATGGCTGGCAGACAGTGGGGCATC GTATCACATGACATCTTCAGCTGACTCCGTCGTTGACGTGCAACCCTCGA ATGATAAGGTTAGAATCGGGAACGACAGTCTGATAGTCATCGAGAGTTAC GGCAATTTGACTGTTAATTTCCCCCGCCAGGAAGAAGGAGGTTGGACGGC GAGGCTAGATAAGGTGGTGTATGTACCGGACTTGGCTATCAACCTGGTTT CGTTGGAAGCTTCTCACAAGAAAGGGGTAGGTTTTGTAATTGATGATACT GATATG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10135:4863..5168+

>mRNA_D-dudresnayi_contig10135.172.1 ID=mRNA_D-dudresnayi_contig10135.172.1|Name=mRNA_D-dudresnayi_contig10135.172.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at D-dudresnayi_contig10135:4863..5168+ (Desmarestia dudresnayi DdudBR16 monoicous)
GAGAATGGCGATAGTAGTACAGAGAGATGGCTGGCAGACAGTGGGGCATC
GTATCACATGACATCTTCAGCTGACTCCGTCGTTGACGTGCAACCCTCGA
ATGATAAGGTTAGAATCGGGAACGACAGTCTGATAGTCATCGAGAGTTAC
GGCAATTTGACTGTTAATTTCCCCCGCCAGGAAGAAGGAGGTTGGACGGC
GAGGCTAGATAAGGTGGTGTATGTACCGGACTTGGCTATCAACCTGGTTT
CGTTGGAAGCTTCTCACAAGAAAGGGGTAGGTTTTGTAATTGATGATACT
GATATGGAGAATGGCGATAGTAGTACAGAGAGATGGCTGGCAGACAGTGG
GGCATCGTATCACATGACATCTTCAGCTGACTCCGTCGTTGACGTGCAAC
CCTCGAATGATAAGGTTAGAATCGGGAACGACAGTCTGATAGTCATCGAG
AGTTACGGCAATTTGACTGTTAATTTCCCCCGCCAGGAAGAAGGAGGTTG
GACGGCGAGGCTAGATAAGGTGGTGTATGTACCGGACTTGGCTATCAACC
TGGTTTCGTTGGAAGCTTCTCACAAGAAAGGGGTAGGTTTTGTAATTGAT
GATACTGATATG
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