mRNA_D-dudresnayi_contig10122.162.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10122.162.1
Unique NamemRNA_D-dudresnayi_contig10122.162.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10122.162.1 vs. uniprot
Match: A0A7S3HEJ7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HEJ7_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.610e-44
Identity = 71/107 (66.36%), Postives = 91/107 (85.05%), Query Frame = 1 
Query:   61 QPSFVSQLYENVLLFLDDCKIEDSRSFDLSRILRIMKVNNLTVASPTIVGANKGGGQKFRNIMQTPALPNSEGYISNFVEIFVWVMTMPAYTALWELFAPAVNPYAW 381
            +P+ + QLY+ V++FLDDCKI+D+++F+L+RIL++M+  NLTVASP IVGANKG G  FR IMQTP +P +EG++S FVEIFV VMTMPAYTALWELF P +NPYAW
Sbjct:    1 KPAELGQLYQYVMIFLDDCKIQDAQTFNLARILQVMEQQNLTVASPMIVGANKGVG--FRKIMQTPPMPGTEGFVSTFVEIFVMVMTMPAYTALWELFCPEINPYAW 105
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BLAST of mRNA_D-dudresnayi_contig10122.162.1 vs. uniprot
Match: A0A482SUG0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUG0_9ARCH)

HSP 1 Score: 77.4 bits (189), Expect = 1.210e-15
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:  247 MQTPALPNSEGYISNFVEIFVWVMTMPAYTALWELFAPAVNPYAW 381
            MQTPA   S GYIS+FVEIF W+MT+PAYTALWEL  P+VNPYAW
Sbjct:    1 MQTPAPVTSAGYISSFVEIFAWMMTIPAYTALWELLCPSVNPYAW 45
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10122.162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3HEJ7_9STRA1.610e-4466.36Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482SUG0_9ARCH1.210e-1575.56Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10122contigD-dudresnayi_contig10122:74..568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size384
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927513.001662-CDS-D-dudresnayi_contig10122:74..2541622927513.001662-CDS-D-dudresnayi_contig10122:74..254Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10122 75..254 -
1690556786.6407194-CDS-D-dudresnayi_contig10122:74..2541690556786.6407194-CDS-D-dudresnayi_contig10122:74..254Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10122 75..254 -
1622927513.0126102-CDS-D-dudresnayi_contig10122:367..5681622927513.0126102-CDS-D-dudresnayi_contig10122:367..568Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10122 368..568 -
1690556786.6583414-CDS-D-dudresnayi_contig10122:367..5681690556786.6583414-CDS-D-dudresnayi_contig10122:367..568Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10122 368..568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10122.162.1prot_D-dudresnayi_contig10122.162.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10122 75..568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10122.162.1

>prot_D-dudresnayi_contig10122.162.1 ID=prot_D-dudresnayi_contig10122.162.1|Name=mRNA_D-dudresnayi_contig10122.162.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=127bp
SECQVVEVANKRVTENLYMVQPSFVSQLYENVLLFLDDCKIEDSRSFDLS
RILRIMKVNNLTVASPTIVGANKGGGQKFRNIMQTPALPNSEGYISNFVE
IFVWVMTMPAYTALWELFAPAVNPYAW
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mRNA from alignment at D-dudresnayi_contig10122:74..568-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10122.162.1 ID=mRNA_D-dudresnayi_contig10122.162.1|Name=mRNA_D-dudresnayi_contig10122.162.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=495bp|location=Sequence derived from alignment at D-dudresnayi_contig10122:74..568- (Desmarestia dudresnayi DdudBR16 monoicous)
TCAGAATGTCAAGTAGTTGAAGTTGCCAATAAAAGAGTAACAGAAAATTT
ATATATGGTACAGCCTTCTTTCGTTTCTCAGCTCTACGAAAATGTTCTCC
TGTTTCTGGATGACTGCAAGATTGAAGACTCCAGGTCCTTCGATCTCTCC
AGAATACTACGTATAATGAAAGTAAACAACCTCACTGTAGCTTCCCCAAC
GGTATGTGTATATCTTATAGAAGTTATAGATTATATAGAGAACTATATTC
TTATTTTGTCTCTCTCCCTCACTGTATATATACTGTATATTATACTGTAC
TGTACTATTTATAGATTGTCGGTGCGAACAAGGGTGGTGGACAGAAATTC
CGTAATATTATGCAAACACCCGCATTACCTAATTCGGAAGGCTATATCTC
TAACTTCGTAGAGATATTTGTATGGGTAATGACAATGCCAGCCTATACTG
CACTATGGGAGCTCTTTGCTCCTGCCGTTAACCCGTACGCATGGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10122:74..568-

>mRNA_D-dudresnayi_contig10122.162.1 ID=mRNA_D-dudresnayi_contig10122.162.1|Name=mRNA_D-dudresnayi_contig10122.162.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at D-dudresnayi_contig10122:74..568- (Desmarestia dudresnayi DdudBR16 monoicous)
TCAGAATGTCAAGTAGTTGAAGTTGCCAATAAAAGAGTAACAGAAAATTT
ATATATGGTACAGCCTTCTTTCGTTTCTCAGCTCTACGAAAATGTTCTCC
TGTTTCTGGATGACTGCAAGATTGAAGACTCCAGGTCCTTCGATCTCTCC
AGAATACTACGTATAATGAAAGTAAACAACCTCACTGTAGCTTCCCCAAC
GTCAGAATGTCAAGTAGTTGAAGTTGCCAATAAAAGAGTAACAGAAAATT
TATATATGGTACAGCCTTCTTTCGTTTCTCAGCTCTACGAAAATGTTCTC
CTGTTTCTGGATGACTGCAAGATTGAAGACTCCAGGTCCTTCGATCTCTC
CAGAATACTACGTATAATGAAAGTAAACAACCTCACTGTAGCTTCCCCAA
CGATTGTCGGTGCGAACAAGGGTGGTGGACAGAAATTCCGTAATATTATG
CAAACACCCGCATTACCTAATTCGGAAGGCTATATCTCTAACTTCGTAGA
GATATTTGTATGGGTAATGACAATGCCAGCCTATACTGCACTATGGGAGC
TCTTTGCTCCTGCCGTTAACCCGTACGCATGGATTGTCGGTGCGAACAAG
GGTGGTGGACAGAAATTCCGTAATATTATGCAAACACCCGCATTACCTAA
TTCGGAAGGCTATATCTCTAACTTCGTAGAGATATTTGTATGGGTAATGA
CAATGCCAGCCTATACTGCACTATGGGAGCTCTTTGCTCCTGCCGTTAAC
CCGTACGCATGG
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