mRNA_D-dudresnayi_contig1011.150.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1011.150.1
Unique NamemRNA_D-dudresnayi_contig1011.150.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1011.150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1011contigD-dudresnayi_contig1011:18083..18411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927512.1204708-CDS-D-dudresnayi_contig1011:18082..184091622927512.1204708-CDS-D-dudresnayi_contig1011:18082..18409Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1011 18083..18409 +
1690556786.1914492-CDS-D-dudresnayi_contig1011:18082..184091690556786.1914492-CDS-D-dudresnayi_contig1011:18082..18409Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1011 18083..18409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1011.150.1prot_D-dudresnayi_contig1011.150.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1011 18083..18409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1011.150.1

>prot_D-dudresnayi_contig1011.150.1 ID=prot_D-dudresnayi_contig1011.150.1|Name=mRNA_D-dudresnayi_contig1011.150.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=109bp
PTDHDLLRVGFRFPFCIEAAAWAMPIAVTSSSLFAPNPTSPKLRDSSLSR
STTSWACMYVAELLERMMLPCHAPRSLSLGTRGCQGFPRWDHSTDALPTS
HDYYYCCCT
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mRNA from alignment at D-dudresnayi_contig1011:18083..18411+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1011.150.1 ID=mRNA_D-dudresnayi_contig1011.150.1|Name=mRNA_D-dudresnayi_contig1011.150.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=329bp|location=Sequence derived from alignment at D-dudresnayi_contig1011:18083..18411+ (Desmarestia dudresnayi DdudBR16 monoicous)
CCCACAGACCATGACTTGCTACGAGTAGGCTTCCGCTTTCCTTTCTGTAT
CGAAGCAGCTGCCTGGGCAATGCCGATCGCCGTGACCTCTTCCTCGTTGT
TTGCACCAAACCCAACCTCTCCCAAATTGAGAGACTCTTCTCTGTCGAGG
TCGACAACCTCCTGGGCATGCATGTATGTGGCCGAGCTCCTGGAACGAAT
GATGCTCCCCTGCCACGCCCCTCGTTCTCTAAGCCTAGGCACGAGAGGCT
GCCAAGGCTTTCCGCGATGGGATCACAGTACGGACGCTCTGCCTACTAGC
CATGACTACTACTACTGTTGTTGTACTCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1011:18083..18411+

>mRNA_D-dudresnayi_contig1011.150.1 ID=mRNA_D-dudresnayi_contig1011.150.1|Name=mRNA_D-dudresnayi_contig1011.150.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at D-dudresnayi_contig1011:18083..18411+ (Desmarestia dudresnayi DdudBR16 monoicous)
CCCACAGACCATGACTTGCTACGAGTAGGCTTCCGCTTTCCTTTCTGTAT
CGAAGCAGCTGCCTGGGCAATGCCGATCGCCGTGACCTCTTCCTCGTTGT
TTGCACCAAACCCAACCTCTCCCAAATTGAGAGACTCTTCTCTGTCGAGG
TCGACAACCTCCTGGGCATGCATGTATGTGGCCGAGCTCCTGGAACGAAT
GATGCTCCCCTGCCACGCCCCTCGTTCTCTAAGCCTAGGCACGAGAGGCT
GCCAAGGCTTTCCGCGATGGGATCACAGTACGGACGCTCTGCCTACTAGC
CATGACTACTACTACTGTTGTTGTACTCCCACAGACCATGACTTGCTACG
AGTAGGCTTCCGCTTTCCTTTCTGTATCGAAGCAGCTGCCTGGGCAATGC
CGATCGCCGTGACCTCTTCCTCGTTGTTTGCACCAAACCCAACCTCTCCC
AAATTGAGAGACTCTTCTCTGTCGAGGTCGACAACCTCCTGGGCATGCAT
GTATGTGGCCGAGCTCCTGGAACGAATGATGCTCCCCTGCCACGCCCCTC
GTTCTCTAAGCCTAGGCACGAGAGGCTGCCAAGGCTTTCCGCGATGGGAT
CACAGTACGGACGCTCTGCCTACTAGCCATGACTACTACTACTGTTGTTG
TACT
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