mRNA_D-dudresnayi_contig101.135.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig101.135.1
Unique NamemRNA_D-dudresnayi_contig101.135.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig101.135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig101contigD-dudresnayi_contig101:543..867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size326
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927510.388644-CDS-D-dudresnayi_contig101:542..8661622927510.388644-CDS-D-dudresnayi_contig101:542..866Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig101 543..866 +
1690556785.1242895-CDS-D-dudresnayi_contig101:542..8661690556785.1242895-CDS-D-dudresnayi_contig101:542..866Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig101 543..866 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927510.4017746-UTR-D-dudresnayi_contig101:866..8671622927510.4017746-UTR-D-dudresnayi_contig101:866..867Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig101 867..867 +
1690556785.1412885-UTR-D-dudresnayi_contig101:866..8671690556785.1412885-UTR-D-dudresnayi_contig101:866..867Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig101 867..867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig101.135.1prot_D-dudresnayi_contig101.135.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig101 543..866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig101.135.1

>prot_D-dudresnayi_contig101.135.1 ID=prot_D-dudresnayi_contig101.135.1|Name=mRNA_D-dudresnayi_contig101.135.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=108bp
APRPLNAQPRAPLQAEICVFPPLPSLLLPSPSLLLSPRWNRHDRGRWYRY
FFLRVPRQAEEERRALLLLLLVLPTAIPTSASAAAAAASLLEALPPRGFR
LPPPPQA*
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mRNA from alignment at D-dudresnayi_contig101:543..867+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig101.135.1 ID=mRNA_D-dudresnayi_contig101.135.1|Name=mRNA_D-dudresnayi_contig101.135.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=325bp|location=Sequence derived from alignment at D-dudresnayi_contig101:543..867+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCGCCACGCCCTCTGAACGCGCAGCCTCGAGCTCCTCTTCAAGCCGAGAT
ATGCGTTTTCCCGCCACTGCCGAGTCTGCTGCTGCCGTCGCCGTCACTGT
TGCTATCGCCACGGTGGAATCGTCACGATCGTGGCCGGTGGTATCGATAC
TTCTTTTTACGGGTCCCTCGACAAGCTGAGGAGGAGCGACGTGCGCTGCT
GCTGCTGTTGCTGGTGCTGCCGACAGCGATTCCAACGAGTGCCTCCGCCG
CCGCTGCTGCTGCTTCCCTTCTCGAGGCCCTTCCCCCTCGCGGCTTCCGT
CTGCCTCCTCCTCCGCAGGCCTAGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig101:543..867+

>mRNA_D-dudresnayi_contig101.135.1 ID=mRNA_D-dudresnayi_contig101.135.1|Name=mRNA_D-dudresnayi_contig101.135.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at D-dudresnayi_contig101:543..867+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCGCCACGCCCTCTGAACGCGCAGCCTCGAGCTCCTCTTCAAGCCGAGAT
ATGCGTTTTCCCGCCACTGCCGAGTCTGCTGCTGCCGTCGCCGTCACTGT
TGCTATCGCCACGGTGGAATCGTCACGATCGTGGCCGGTGGTATCGATAC
TTCTTTTTACGGGTCCCTCGACAAGCTGAGGAGGAGCGACGTGCGCTGCT
GCTGCTGTTGCTGGTGCTGCCGACAGCGATTCCAACGAGTGCCTCCGCCG
CCGCTGCTGCTGCTTCCCTTCTCGAGGCCCTTCCCCCTCGCGGCTTCCGT
CTGCCTCCTCCTCCGCAGGCCTAGGCGCCACGCCCTCTGAACGCGCAGCC
TCGAGCTCCTCTTCAAGCCGAGATATGCGTTTTCCCGCCACTGCCGAGTC
TGCTGCTGCCGTCGCCGTCACTGTTGCTATCGCCACGGTGGAATCGTCAC
GATCGTGGCCGGTGGTATCGATACTTCTTTTTACGGGTCCCTCGACAAGC
TGAGGAGGAGCGACGTGCGCTGCTGCTGCTGTTGCTGGTGCTGCCGACAG
CGATTCCAACGAGTGCCTCCGCCGCCGCTGCTGCTGCTTCCCTTCTCGAG
GCCCTTCCCCCTCGCGGCTTCCGTCTGCCTCCTCCTCCGCAGGCCTAG
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