mRNA_D-dudresnayi_contig10099.134.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10099.134.1
Unique NamemRNA_D-dudresnayi_contig10099.134.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10099.134.1 vs. uniprot
Match: A0A6H5KZC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZC8_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.830e-13
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = 3 
Query:    3 LFPEREVGCTRVFEDNMGALQLASNLVSSSNSKHIDVRHHFLWELVAKG 149
            +FP R+VGCT V+EDN+GA+ LASN  ++ NSKHID+RHHF+ E VA+G
Sbjct:   92 IFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARG 140
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BLAST of mRNA_D-dudresnayi_contig10099.134.1 vs. uniprot
Match: A0A6H5JH88_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH88_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 6.570e-13
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 3 
Query:    3 LFPEREVGCTRVFEDNMGALQLASNLVSSSNSKHIDVRHHFLWELVAKGR*RSSMYHRSTSMLTFSRNH 209
            + PE  + C  VFEDN GA+QLA N +S+SNSKHID+RHHF+ ELV +       +++  +MLT SR H
Sbjct:  244 MLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDLRHHFIRELVGRKEISIFTWNQCINMLTSSRRH 312
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BLAST of mRNA_D-dudresnayi_contig10099.134.1 vs. uniprot
Match: A0A6H5KPR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPR3_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 7.490e-13
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = 3 
Query:    3 LFPEREVGCTRVFEDNMGALQLASNLVSSSNSKHIDVRHHFLWELVAKG 149
            +FP R+VGCT V+EDN+GA+ LASN  ++ NSKHID+RHHF+ E VA+G
Sbjct:  157 IFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARG 205
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BLAST of mRNA_D-dudresnayi_contig10099.134.1 vs. uniprot
Match: A0A6H5JHE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHE6_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.060e-12
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = 3 
Query:    3 LFPEREVGCTRVFEDNMGALQLASNLVSSSNSKHIDVRHHFLWELVAKG 149
            +FP R+VGCT V+EDN+GA+ LASN  ++ NSKHID+RHHF+ E VA+G
Sbjct:  249 IFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIHERVARG 297
[Close]
BLAST of mRNA_D-dudresnayi_contig10099.134.1 vs. uniprot
Match: A0A6H5L610_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L610_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.670e-12
Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 3 
Query:    3 LFPEREVGCTRVFEDNMGALQLASNLVSSSNSKHIDVRHHFLWELVAKG 149
            +FP  +VGCT V+EDN+GA+ LASN  ++ NSKHID+RHHF+ E VA+G
Sbjct:   46 IFPGCDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARG 94
[Close]
BLAST of mRNA_D-dudresnayi_contig10099.134.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.540e-12
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = 3 
Query:    3 LFPEREVGCTRVFEDNMGALQLASNLVSSSNSKHIDVRHHFLWELVAKG 149
            +FP R+VGCT V+EDN+GA+ LASN  ++ NSKHID+RHHF+ E VA+G
Sbjct:  491 IFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARG 539
[Close]
BLAST of mRNA_D-dudresnayi_contig10099.134.1 vs. uniprot
Match: A0A6H5K0K7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K7_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.580e-12
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = 3 
Query:    3 LFPEREVGCTRVFEDNMGALQLASNLVSSSNSKHIDVRHHFLWELVAKG 149
            +FP R+VGCT V+EDN+GA+ LASN  ++ NSKHID+RHHF+ E VA+G
Sbjct:  671 IFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARG 719
[Close]
BLAST of mRNA_D-dudresnayi_contig10099.134.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.590e-12
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = 3 
Query:    3 LFPEREVGCTRVFEDNMGALQLASNLVSSSNSKHIDVRHHFLWELVAKG 149
            +FP R+VGCT V+EDN+GA+ LASN  ++ NSKHID+RHHF+ E VA+G
Sbjct:  715 IFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARG 763
[Close]
BLAST of mRNA_D-dudresnayi_contig10099.134.1 vs. uniprot
Match: A0A6H5JE07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE07_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.630e-12
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = 3 
Query:    3 LFPEREVGCTRVFEDNMGALQLASNLVSSSNSKHIDVRHHFLWELVAKG 149
            +FP R+VGCT V+EDN+GA+ LASN  ++ NSKHID+RHHF+ E VA+G
Sbjct: 1004 IFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARG 1052
[Close]
BLAST of mRNA_D-dudresnayi_contig10099.134.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.660e-12
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = 3 
Query:    3 LFPEREVGCTRVFEDNMGALQLASNLVSSSNSKHIDVRHHFLWELVAKG 149
            +FP R+VGCT V+EDN+GA+ LASN  ++ NSKHID+RHHF+ E VA+G
Sbjct: 1791 IFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARG 1839
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10099.134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZC8_9PHAE2.830e-1363.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH88_9PHAE6.570e-1350.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPR3_9PHAE7.490e-1363.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHE6_9PHAE1.060e-1263.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L610_9PHAE1.670e-1261.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWG1_9PHAE2.540e-1263.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K0K7_9PHAE2.580e-1263.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGK7_9PHAE2.590e-1263.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JE07_9PHAE2.630e-1263.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAC2_9PHAE2.660e-1263.27Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10099contigD-dudresnayi_contig10099:5964..6366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_001720.2
Exons2
Model size277
Cds size105
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10099.134.1prot_D-dudresnayi_contig10099.134.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10099 6014..6118 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927510.3164623-UTR-D-dudresnayi_contig10099:5963..60131622927510.3164623-UTR-D-dudresnayi_contig10099:5963..6013Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10099 5964..6013 +
1690556785.084121-UTR-D-dudresnayi_contig10099:5963..60131690556785.084121-UTR-D-dudresnayi_contig10099:5963..6013Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10099 5964..6013 +
1622927510.3407743-UTR-D-dudresnayi_contig10099:6118..61751622927510.3407743-UTR-D-dudresnayi_contig10099:6118..6175Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10099 6119..6175 +
1690556785.102237-UTR-D-dudresnayi_contig10099:6118..61751690556785.102237-UTR-D-dudresnayi_contig10099:6118..6175Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10099 6119..6175 +
1622927510.3528981-UTR-D-dudresnayi_contig10099:6301..63661622927510.3528981-UTR-D-dudresnayi_contig10099:6301..6366Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10099 6302..6366 +
1690556785.1108754-UTR-D-dudresnayi_contig10099:6301..63661690556785.1108754-UTR-D-dudresnayi_contig10099:6301..6366Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10099 6302..6366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927510.3305378-CDS-D-dudresnayi_contig10099:6013..61181622927510.3305378-CDS-D-dudresnayi_contig10099:6013..6118Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10099 6014..6118 +
1690556785.0930688-CDS-D-dudresnayi_contig10099:6013..61181690556785.0930688-CDS-D-dudresnayi_contig10099:6013..6118Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10099 6014..6118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10099.134.1

>prot_D-dudresnayi_contig10099.134.1 ID=prot_D-dudresnayi_contig10099.134.1|Name=mRNA_D-dudresnayi_contig10099.134.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=35bp
MGALQLASNLVSSSNSKHIDVRHHFLWELVAKGR*
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mRNA from alignment at D-dudresnayi_contig10099:5964..6366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10099.134.1 ID=mRNA_D-dudresnayi_contig10099.134.1|Name=mRNA_D-dudresnayi_contig10099.134.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=403bp|location=Sequence derived from alignment at D-dudresnayi_contig10099:5964..6366+ (Desmarestia dudresnayi DdudBR16 monoicous)
TCCTTTTCCCTGAACGTGAGGTGGGTTGCACGAGAGTGTTTGAGGACAAC
ATGGGGGCGCTGCAATTGGCGTCGAATCTCGTGAGCAGTTCGAACTCGAA
GCATATCGACGTGCGACACCATTTTCTCTGGGAACTTGTTGCCAAGGGGA
GATAGAGATCATCCATGTATCATCGGAGTACCAGTATGCTGACTTTCTCA
AGAAATCATTGAGCCATGCTACGGTAGGGGGGGTACATTTGGCCCCTAAA
ATGCTCTGACGGATGGGGCTCTTCAACTGAGGAACTACCCAATATCTTTG
AAATTATGTGCGTGATGTAGCTTTTTATTGGAAATGAGCACGCTTTCTTT
TAGGTTTCACAGGGATATTGTCATGAATATGGGTTGATTTGTTTTGTGTT
GAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10099:5964..6366+

>mRNA_D-dudresnayi_contig10099.134.1 ID=mRNA_D-dudresnayi_contig10099.134.1|Name=mRNA_D-dudresnayi_contig10099.134.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=210bp|location=Sequence derived from alignment at D-dudresnayi_contig10099:5964..6366+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGGGGCGCTGCAATTGGCGTCGAATCTCGTGAGCAGTTCGAACTCGAA
GCATATCGACGTGCGACACCATTTTCTCTGGGAACTTGTTGCCAAGGGGA
GATAGATGGGGGCGCTGCAATTGGCGTCGAATCTCGTGAGCAGTTCGAAC
TCGAAGCATATCGACGTGCGACACCATTTTCTCTGGGAACTTGTTGCCAA
GGGGAGATAG
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