mRNA_D-dudresnayi_contig10093.130.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10093.130.1
Unique NamemRNA_D-dudresnayi_contig10093.130.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10093.130.1 vs. uniprot
Match: A0A6H5KRR2_9PHAE (NAD(P)-bd_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRR2_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 9.410e-17
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 GLTLDLPRGVTAIELNQGDTKSGRIARSDVARVCVESIYR 120
            GLTLD PRGVTAIELNQGDTKSGRIAR+DVARVCVESIYR
Sbjct:   64 GLTLDPPRGVTAIELNQGDTKSGRIARADVARVCVESIYR 103
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BLAST of mRNA_D-dudresnayi_contig10093.130.1 vs. uniprot
Match: D8LDG8_ECTSI (NAD(P)-bd_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG8_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.080e-14
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 GLTLDLPRGVTAIELNQGDTKSGRIARSDVARVCVESIY 117
            GLTLD PRGV AIELNQGDTKSGRIAR+DVARVCVESIY
Sbjct:  273 GLTLDPPRGVGAIELNQGDTKSGRIARADVARVCVESIY 311
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BLAST of mRNA_D-dudresnayi_contig10093.130.1 vs. uniprot
Match: A0A7S1CTA4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CTA4_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 8.920e-12
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 GLTLDLPRGVTAIELNQGDTKSGRIARSDVARVCVESI 114
            GLTLD PRGV AIELNQGDTKSGR+AR+DVA++CVES+
Sbjct:  262 GLTLDPPRGVAAIELNQGDTKSGRLARADVAQLCVESL 299
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BLAST of mRNA_D-dudresnayi_contig10093.130.1 vs. uniprot
Match: A0A7S1ZWK7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZWK7_TRICV)

HSP 1 Score: 62.0 bits (149), Expect = 6.650e-11
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 GLTLDLPRGVTAIELNQGDTKSGRIARSDVARVCVESI 114
            GLT D PRG  A+ELNQGDTKSGRI+R+DVA +CVESI
Sbjct:   57 GLTTDPPRGAAALELNQGDTKSGRISRADVAALCVESI 94
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BLAST of mRNA_D-dudresnayi_contig10093.130.1 vs. uniprot
Match: B7G342_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G342_PHATC)

HSP 1 Score: 63.5 bits (153), Expect = 1.140e-10
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 GLTLDLPRGVTAIELNQGDTKSGRIARSDVARVCVES 111
            GLT D PRGVTA+ELNQGDTKSGRIAR+DVA +C+E+
Sbjct:  268 GLTEDAPRGVTALELNQGDTKSGRIARADVAALCIEA 304
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BLAST of mRNA_D-dudresnayi_contig10093.130.1 vs. uniprot
Match: A0A7S2HEC2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HEC2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.110e-10
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 GLTLDLPRGVTAIELNQGDTKSGRIARSDVARVCVESI 114
            GLT D PRGV A+ELNQGDTKSGRI+R+DVA +CVE +
Sbjct:  295 GLTTDPPRGVAAVELNQGDTKSGRISRADVAAICVECL 332
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BLAST of mRNA_D-dudresnayi_contig10093.130.1 vs. uniprot
Match: A0A1Y5ICD0_OSTTA (NAD(P)-bd_dom domain-containing protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5ICD0_OSTTA)

HSP 1 Score: 58.2 bits (139), Expect = 1.590e-9
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 GLTLDLPRGVTAIELNQGDTKSGRIARSDVARVCVESIYR 120
            GL+ DL RGV+A+ELNQGD  SGRI+R DVA +C+ESI R
Sbjct:   30 GLSEDLARGVSALELNQGDEMSGRISREDVAAICIESISR 69
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BLAST of mRNA_D-dudresnayi_contig10093.130.1 vs. uniprot
Match: C1FI73_MICCC (NAD(P)-bd_dom domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FI73_MICCC)

HSP 1 Score: 59.7 bits (143), Expect = 2.530e-9
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 GLTLDLPRGVTAIELNQGDTKSGRIARSDVARVCVES 111
            GLT D PRGV AIELNQGD KSGRI+RSDVA +CVE+
Sbjct:  219 GLTEDEPRGVGAIELNQGDDKSGRISRSDVAAICVEA 255
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BLAST of mRNA_D-dudresnayi_contig10093.130.1 vs. uniprot
Match: A0A7S4KXC8_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KXC8_GUITH)

HSP 1 Score: 55.8 bits (133), Expect = 5.250e-9
Identity = 24/31 (77.42%), Postives = 30/31 (96.77%), Query Frame = 1 
Query:   25 GVTAIELNQGDTKSGRIARSDVARVCVESIY 117
            GV+++ELNQGDTKSGRIAR+DVA +CVESI+
Sbjct:    6 GVSSVELNQGDTKSGRIARADVAEICVESIF 36
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BLAST of mRNA_D-dudresnayi_contig10093.130.1 vs. uniprot
Match: L1IPP0_GUITC (NAD(P)-bd_dom domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IPP0_GUITC)

HSP 1 Score: 58.5 bits (140), Expect = 6.120e-9
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 GLTLDLPRGVTAIELNQGDTKSGRIARSDVARVCVESIY 117
            GLT     GV+++ELNQGDTKSGRIAR+DVA +CVESI+
Sbjct:  201 GLTEGAALGVSSVELNQGDTKSGRIARADVAEICVESIF 239
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10093.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5KRR2_9PHAE9.410e-1795.00NAD(P)-bd_dom domain-containing protein n=1 Tax=Ec... [more]
D8LDG8_ECTSI4.080e-1492.31NAD(P)-bd_dom domain-containing protein n=1 Tax=Ec... [more]
A0A7S1CTA4_9STRA8.920e-1281.58Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1ZWK7_TRICV6.650e-1176.32Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
B7G342_PHATC1.140e-1078.38Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2HEC2_9STRA4.110e-1073.68Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1Y5ICD0_OSTTA1.590e-967.50NAD(P)-bd_dom domain-containing protein n=1 Tax=Os... [more]
C1FI73_MICCC2.530e-978.38NAD(P)-bd_dom domain-containing protein n=1 Tax=Mi... [more]
A0A7S4KXC8_GUITH5.250e-977.42Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
L1IPP0_GUITC6.120e-969.23NAD(P)-bd_dom domain-containing protein n=2 Tax=Gu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10093contigD-dudresnayi_contig10093:10882..11004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue3.2e-11
Seed eggNOG ortholog2880.D8LDG8
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-15_000670.1
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927509.9615543-CDS-D-dudresnayi_contig10093:10881..110041622927509.9615543-CDS-D-dudresnayi_contig10093:10881..11004Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10093 10882..11004 -
1690556784.8966632-CDS-D-dudresnayi_contig10093:10881..110041690556784.8966632-CDS-D-dudresnayi_contig10093:10881..11004Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10093 10882..11004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10093.130.1prot_D-dudresnayi_contig10093.130.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10093 10882..11004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10093.130.1

>prot_D-dudresnayi_contig10093.130.1 ID=prot_D-dudresnayi_contig10093.130.1|Name=mRNA_D-dudresnayi_contig10093.130.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=41bp
GLTLDLPRGVTAIELNQGDTKSGRIARSDVARVCVESIYR*
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mRNA from alignment at D-dudresnayi_contig10093:10882..11004-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10093.130.1 ID=mRNA_D-dudresnayi_contig10093.130.1|Name=mRNA_D-dudresnayi_contig10093.130.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at D-dudresnayi_contig10093:10882..11004- (Desmarestia dudresnayi DdudBR16 monoicous)
GGACTAACATTAGATCTCCCCAGGGGAGTTACCGCCATCGAACTAAACCA
GGGAGATACCAAAAGCGGCCGCATCGCGCGTTCTGACGTGGCTCGGGTCT
GTGTCGAGTCTATCTACAGGTAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10093:10882..11004-

>mRNA_D-dudresnayi_contig10093.130.1 ID=mRNA_D-dudresnayi_contig10093.130.1|Name=mRNA_D-dudresnayi_contig10093.130.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at D-dudresnayi_contig10093:10882..11004- (Desmarestia dudresnayi DdudBR16 monoicous)
GGACTAACATTAGATCTCCCCAGGGGAGTTACCGCCATCGAACTAAACCA
GGGAGATACCAAAAGCGGCCGCATCGCGCGTTCTGACGTGGCTCGGGTCT
GTGTCGAGTCTATCTACAGGTAGGGACTAACATTAGATCTCCCCAGGGGA
GTTACCGCCATCGAACTAAACCAGGGAGATACCAAAAGCGGCCGCATCGC
GCGTTCTGACGTGGCTCGGGTCTGTGTCGAGTCTATCTACAGGTAG
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