mRNA_D-dudresnayi_contig10084.121.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10084.121.1
Unique NamemRNA_D-dudresnayi_contig10084.121.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10084.121.1 vs. uniprot
Match: D8LB19_ECTSI (Similar to RING finger protein 122 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB19_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 1.210e-44
Identity = 106/165 (64.24%), Postives = 121/165 (73.33%), Query Frame = 1 
Query:    1 EAQAAALRLAKQEQEAQAREDELLALRLAAREEAAHERSLSRHRHGHGPHYPHRRS-----RRRSPPSSLTAGS---AAAFAAGGEVSEAVRALQFQDINENDFETLLALDEAGGEGGRCCGGGKGLTEEAMEEALEAGEAAGVALEESCAICLLDFEMGDEVII 471
            E +AAA R AKQEQEAQAREDELLALRLAAREEA  ER  SR R         RRS     RR S P  ++  S   A A AAGG +S+AVRALQFQDI+ENDFETLLALDEAGGEGGRCC GGKGL +EAME  L+ G+AAG  LEESCA+C+ +F +GDE+ +
Sbjct:  774 EDEAAARRFAKQEQEAQAREDELLALRLAAREEAGAERRASRRR-------VQRRSNASSARRNSIPGYISPDSNHPAVASAAGGNLSDAVRALQFQDIDENDFETLLALDEAGGEGGRCCAGGKGLADEAMEAVLQTGKAAGARLEESCAVCMEEFGLGDEISV 931
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BLAST of mRNA_D-dudresnayi_contig10084.121.1 vs. uniprot
Match: A0A6H5L8B3_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8B3_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.160e-30
Identity = 60/79 (75.95%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:  235 VSEAVRALQFQDINENDFETLLALDEAGGEGGRCCGGGKGLTEEAMEEALEAGEAAGVALEESCAICLLDFEMGDEVII 471
            VS+A+RALQFQDI+ENDFETLLALDEAGGEGGRCC GGKGL EEAME AL+AG AAG  LEESCA+C+ +F +GDE+ +
Sbjct:  856 VSDAIRALQFQDIDENDFETLLALDEAGGEGGRCCAGGKGLAEEAMEAALQAGTAAGARLEESCAVCMEEFGLGDEISV 934
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10084.121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB19_ECTSI1.210e-4464.24Similar to RING finger protein 122 n=1 Tax=Ectocar... [more]
A0A6H5L8B3_9PHAE3.160e-3075.95RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10084contigD-dudresnayi_contig10084:100..576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.2
Seed ortholog evalue2e-40
Seed eggNOG ortholog2880.D8LB19
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-27_005580.1
Exons1
Model size477
Cds size477
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927509.1517932-CDS-D-dudresnayi_contig10084:99..5761622927509.1517932-CDS-D-dudresnayi_contig10084:99..576Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10084 100..576 -
1690556784.3373709-CDS-D-dudresnayi_contig10084:99..5761690556784.3373709-CDS-D-dudresnayi_contig10084:99..576Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10084 100..576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10084.121.1prot_D-dudresnayi_contig10084.121.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10084 100..576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10084.121.1

>prot_D-dudresnayi_contig10084.121.1 ID=prot_D-dudresnayi_contig10084.121.1|Name=mRNA_D-dudresnayi_contig10084.121.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=159bp
EAQAAALRLAKQEQEAQAREDELLALRLAAREEAAHERSLSRHRHGHGPH
YPHRRSRRRSPPSSLTAGSAAAFAAGGEVSEAVRALQFQDINENDFETLL
ALDEAGGEGGRCCGGGKGLTEEAMEEALEAGEAAGVALEESCAICLLDFE
MGDEVIIQ*
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mRNA from alignment at D-dudresnayi_contig10084:100..576-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10084.121.1 ID=mRNA_D-dudresnayi_contig10084.121.1|Name=mRNA_D-dudresnayi_contig10084.121.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=477bp|location=Sequence derived from alignment at D-dudresnayi_contig10084:100..576- (Desmarestia dudresnayi DdudBR16 monoicous)
GAGGCACAGGCGGCCGCTCTCCGCCTGGCAAAGCAGGAGCAAGAGGCCCA
GGCGCGCGAGGACGAGCTCCTGGCTCTCCGCCTGGCCGCCCGAGAAGAGG
CCGCCCACGAGCGCAGCCTGTCTCGCCACCGCCACGGCCACGGCCCCCAC
TACCCCCACCGCCGCAGCCGAAGGCGTTCCCCCCCGTCCAGCCTAACCGC
AGGATCCGCCGCCGCGTTCGCCGCGGGAGGGGAGGTTAGCGAGGCCGTGA
GGGCGCTGCAGTTCCAGGACATAAATGAGAACGACTTCGAGACGCTGCTG
GCTCTGGACGAGGCGGGCGGGGAGGGGGGACGGTGTTGCGGCGGGGGTAA
GGGGCTGACGGAGGAGGCGATGGAGGAGGCGTTGGAAGCTGGAGAGGCCG
CGGGGGTTGCGTTGGAGGAGAGCTGCGCCATCTGTTTGCTCGATTTTGAG
ATGGGCGATGAGGTGATAATACAATAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10084:100..576-

>mRNA_D-dudresnayi_contig10084.121.1 ID=mRNA_D-dudresnayi_contig10084.121.1|Name=mRNA_D-dudresnayi_contig10084.121.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at D-dudresnayi_contig10084:100..576- (Desmarestia dudresnayi DdudBR16 monoicous)
GAGGCACAGGCGGCCGCTCTCCGCCTGGCAAAGCAGGAGCAAGAGGCCCA
GGCGCGCGAGGACGAGCTCCTGGCTCTCCGCCTGGCCGCCCGAGAAGAGG
CCGCCCACGAGCGCAGCCTGTCTCGCCACCGCCACGGCCACGGCCCCCAC
TACCCCCACCGCCGCAGCCGAAGGCGTTCCCCCCCGTCCAGCCTAACCGC
AGGATCCGCCGCCGCGTTCGCCGCGGGAGGGGAGGTTAGCGAGGCCGTGA
GGGCGCTGCAGTTCCAGGACATAAATGAGAACGACTTCGAGACGCTGCTG
GCTCTGGACGAGGCGGGCGGGGAGGGGGGACGGTGTTGCGGCGGGGGTAA
GGGGCTGACGGAGGAGGCGATGGAGGAGGCGTTGGAAGCTGGAGAGGCCG
CGGGGGTTGCGTTGGAGGAGAGCTGCGCCATCTGTTTGCTCGATTTTGAG
ATGGGCGATGAGGTGATAATACAATAGGAGGCACAGGCGGCCGCTCTCCG
CCTGGCAAAGCAGGAGCAAGAGGCCCAGGCGCGCGAGGACGAGCTCCTGG
CTCTCCGCCTGGCCGCCCGAGAAGAGGCCGCCCACGAGCGCAGCCTGTCT
CGCCACCGCCACGGCCACGGCCCCCACTACCCCCACCGCCGCAGCCGAAG
GCGTTCCCCCCCGTCCAGCCTAACCGCAGGATCCGCCGCCGCGTTCGCCG
CGGGAGGGGAGGTTAGCGAGGCCGTGAGGGCGCTGCAGTTCCAGGACATA
AATGAGAACGACTTCGAGACGCTGCTGGCTCTGGACGAGGCGGGCGGGGA
GGGGGGACGGTGTTGCGGCGGGGGTAAGGGGCTGACGGAGGAGGCGATGG
AGGAGGCGTTGGAAGCTGGAGAGGCCGCGGGGGTTGCGTTGGAGGAGAGC
TGCGCCATCTGTTTGCTCGATTTTGAGATGGGCGATGAGGTGATAATACA
ATAG
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