mRNA_D-dudresnayi_contig10081.119.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10081.119.1
Unique NamemRNA_D-dudresnayi_contig10081.119.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10081.119.1 vs. uniprot
Match: A0A482SFE7_9ARCH (Histone domain-containing protein n=2 Tax=archaeon TaxID=1906665 RepID=A0A482SFE7_9ARCH)

HSP 1 Score: 163 bits (412), Expect = 3.490e-50
Identity = 83/92 (90.22%), Postives = 91/92 (98.91%), Query Frame = 1 
Query:   10 KKVESYASYIYKVLKQVHPNTGISKRGMSILNSFINDIFERLALEASRLSRYSKKSTLSSREIQTAVRLLLPGELSKHAVSEGTKAVTKFTS 285
            K+ ESY++YIY+VLKQVHPNTGISKRGMSILNSFINDIFER+ALE+SRLSRY+KKSTLSSREIQTAVRLLLPGEL+KHAVSEGTKAVTKFTS
Sbjct:   28 KRTESYSTYIYRVLKQVHPNTGISKRGMSILNSFINDIFERIALESSRLSRYNKKSTLSSREIQTAVRLLLPGELAKHAVSEGTKAVTKFTS 119
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BLAST of mRNA_D-dudresnayi_contig10081.119.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 162 bits (410), Expect = 7.040e-50
Identity = 82/96 (85.42%), Postives = 92/96 (95.83%), Query Frame = 1 
Query:    1 RKTKKVESYASYIYKVLKQVHPNTGISKRGMSILNSFINDIFERLALEASRLSRYSKKSTLSSREIQTAVRLLLPGELSKHAVSEGTKAVTKFTSS 288
            RK K++ESY++YIYKVLKQVHP TGISKRGMSI+NSFINDIFER+A EA +LSRY+KKSTLSSREIQTAVRL+LPGEL+KHAVSEGTKAVTKFTSS
Sbjct:   23 RKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_D-dudresnayi_contig10081.119.1 vs. uniprot
Match: A0A6G0XRP0_9STRA (Histone H2B n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRP0_9STRA)

HSP 1 Score: 160 bits (406), Expect = 2.960e-49
Identity = 81/96 (84.38%), Postives = 92/96 (95.83%), Query Frame = 1 
Query:    1 RKTKKVESYASYIYKVLKQVHPNTGISKRGMSILNSFINDIFERLALEASRLSRYSKKSTLSSREIQTAVRLLLPGELSKHAVSEGTKAVTKFTSS 288
            RKT++VESY++YIYKVLKQVHP TGISKRGMSI+NSFINDIFER+  EAS+LSRY+KK TLSSREIQTAVRL+LPGEL+KHAVSEGTKAVTK+TSS
Sbjct:   24 RKTRRVESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIGAEASKLSRYNKKMTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKYTSS 119
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BLAST of mRNA_D-dudresnayi_contig10081.119.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 160 bits (404), Expect = 4.940e-49
Identity = 81/95 (85.26%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:    1 RKTKKVESYASYIYKVLKQVHPNTGISKRGMSILNSFINDIFERLALEASRLSRYSKKSTLSSREIQTAVRLLLPGELSKHAVSEGTKAVTKFTS 285
            ++ K+VE+Y+SYIYKVLKQVHP+TGISKRGMSI+NSFINDIFERLA EASRL+RY+K+STLSSREIQTAVRL+LPGEL+KHAVSEGTKAVTKFTS
Sbjct:   19 KRNKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 113
[Close]
BLAST of mRNA_D-dudresnayi_contig10081.119.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 159 bits (403), Expect = 7.950e-49
Identity = 80/96 (83.33%), Postives = 91/96 (94.79%), Query Frame = 1 
Query:    1 RKTKKVESYASYIYKVLKQVHPNTGISKRGMSILNSFINDIFERLALEASRLSRYSKKSTLSSREIQTAVRLLLPGELSKHAVSEGTKAVTKFTSS 288
            +K K+ ESY SYIYKVLKQVHP+TGISKRGMSI+NSFIND+FER+A EA +L+RY+KKSTLSSREIQTAVRL+LPGEL+KHAVSEGTKAVTKFTSS
Sbjct:   22 KKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
[Close]
BLAST of mRNA_D-dudresnayi_contig10081.119.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 158 bits (399), Expect = 4.860e-48
Identity = 81/96 (84.38%), Postives = 91/96 (94.79%), Query Frame = 1 
Query:    1 RKTKKVESYASYIYKVLKQVHPNTGISKRGMSILNSFINDIFERLALEASRLSRYSKKSTLSSREIQTAVRLLLPGELSKHAVSEGTKAVTKFTSS 288
            +K K+ ESY+SYIYKVLKQVHP TGISK+GMSI+NSFINDIFERLA EA RL+RYSKK+TLSSREIQT+VRL+LPGEL+KHAVSEGTKAVTKFTSS
Sbjct:   35 KKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
[Close]
BLAST of mRNA_D-dudresnayi_contig10081.119.1 vs. uniprot
Match: A0A8J5MIZ0_9STRA (Histone domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MIZ0_9STRA)

HSP 1 Score: 157 bits (397), Expect = 7.170e-48
Identity = 79/92 (85.87%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:   10 KKVESYASYIYKVLKQVHPNTGISKRGMSILNSFINDIFERLALEASRLSRYSKKSTLSSREIQTAVRLLLPGELSKHAVSEGTKAVTKFTS 285
            K+VESY++YIYKVL+QVHP+TGISKRGMSI+NSFINDIFER+A EA +LSRY+KKSTLSSREIQTAVRL+LPGEL+KHAVSEGTKAVTKFTS
Sbjct:   29 KRVESYSTYIYKVLRQVHPDTGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 120
[Close]
BLAST of mRNA_D-dudresnayi_contig10081.119.1 vs. uniprot
Match: M4B6M3_HYAAE (Histone H2B n=49 Tax=Oomycota TaxID=4762 RepID=M4B6M3_HYAAE)

HSP 1 Score: 157 bits (396), Expect = 8.990e-48
Identity = 79/92 (85.87%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:   10 KKVESYASYIYKVLKQVHPNTGISKRGMSILNSFINDIFERLALEASRLSRYSKKSTLSSREIQTAVRLLLPGELSKHAVSEGTKAVTKFTS 285
            K+VESY++YIYKVL+QVHP TGISKRGMSI+NSFINDIFER+A EA +LSRY+KKSTLSSREIQTAVRL+LPGEL+KHAVSEGTKAVTKFTS
Sbjct:   25 KRVESYSTYIYKVLRQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 116
[Close]
BLAST of mRNA_D-dudresnayi_contig10081.119.1 vs. uniprot
Match: M4B6T6_HYAAE (Histone H2B n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6T6_HYAAE)

HSP 1 Score: 157 bits (397), Expect = 2.820e-47
Identity = 80/95 (84.21%), Postives = 90/95 (94.74%), Query Frame = 1 
Query:    1 RKTKKVESYASYIYKVLKQVHPNTGISKRGMSILNSFINDIFERLALEASRLSRYSKKSTLSSREIQTAVRLLLPGELSKHAVSEGTKAVTKFTS 285
            R  K+VESY++YIYKVL+QVHP TGISKRGMSI+NSFINDIFER+A EA +LSRY+KKSTLSSREIQTAVRL+LPGEL+KHAVSEGTKAVTKFTS
Sbjct:   70 RGKKRVESYSTYIYKVLRQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 164
[Close]
BLAST of mRNA_D-dudresnayi_contig10081.119.1 vs. uniprot
Match: A0A835YLA9_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA9_9STRA)

HSP 1 Score: 156 bits (394), Expect = 3.490e-47
Identity = 77/95 (81.05%), Postives = 90/95 (94.74%), Query Frame = 1 
Query:    1 RKTKKVESYASYIYKVLKQVHPNTGISKRGMSILNSFINDIFERLALEASRLSRYSKKSTLSSREIQTAVRLLLPGELSKHAVSEGTKAVTKFTS 285
            R+ K+VESY+SYIYKVLKQVHP+TGISKRGMS++NSFIND+FER+A EA RL+RY+ + TLSSREIQTAVRL+LPGEL+KHAVSEGTKAVTKFTS
Sbjct:   44 RRPKRVESYSSYIYKVLKQVHPDTGISKRGMSVMNSFINDVFERIASEAGRLTRYNNRQTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 138
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10081.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482SFE7_9ARCH3.490e-5090.22Histone domain-containing protein n=2 Tax=archaeon... [more]
A0A485K2U0_9STRA7.040e-5085.42Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A6G0XRP0_9STRA2.960e-4984.38Histone H2B n=1 Tax=Aphanomyces euteiches TaxID=10... [more]
H2B_OLILU4.940e-4985.26Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A836CJ22_9STRA7.950e-4983.33Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A6U0X3U9_9STRA4.860e-4884.38Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A8J5MIZ0_9STRA7.170e-4885.87Histone domain-containing protein n=1 Tax=Phytopht... [more]
M4B6M3_HYAAE8.990e-4885.87Histone H2B n=49 Tax=Oomycota TaxID=4762 RepID=M4B... [more]
M4B6T6_HYAAE2.820e-4784.21Histone H2B n=1 Tax=Hyaloperonospora arabidopsidis... [more]
A0A835YLA9_9STRA3.490e-4781.05Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10081contigD-dudresnayi_contig10081:10441..10734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue5.1e-39
Seed eggNOG ortholog157072.XP_008868867.1
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927508.9347007-CDS-D-dudresnayi_contig10081:10440..107341622927508.9347007-CDS-D-dudresnayi_contig10081:10440..10734Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10081 10441..10734 -
1690556784.2156825-CDS-D-dudresnayi_contig10081:10440..107341690556784.2156825-CDS-D-dudresnayi_contig10081:10440..10734Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10081 10441..10734 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10081.119.1prot_D-dudresnayi_contig10081.119.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10081 10441..10734 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10081.119.1

>prot_D-dudresnayi_contig10081.119.1 ID=prot_D-dudresnayi_contig10081.119.1|Name=mRNA_D-dudresnayi_contig10081.119.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=98bp
RKTKKVESYASYIYKVLKQVHPNTGISKRGMSILNSFINDIFERLALEAS
RLSRYSKKSTLSSREIQTAVRLLLPGELSKHAVSEGTKAVTKFTSSN*
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mRNA from alignment at D-dudresnayi_contig10081:10441..10734-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10081.119.1 ID=mRNA_D-dudresnayi_contig10081.119.1|Name=mRNA_D-dudresnayi_contig10081.119.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=294bp|location=Sequence derived from alignment at D-dudresnayi_contig10081:10441..10734- (Desmarestia dudresnayi DdudBR16 monoicous)
AGAAAGACCAAGAAGGTTGAGTCCTACGCTTCTTACATCTACAAGGTGCT
GAAGCAGGTTCACCCCAACACTGGCATCTCCAAGAGAGGCATGTCCATCC
TGAACTCCTTCATCAACGATATCTTCGAGCGCCTGGCTCTTGAGGCTTCT
CGTCTGTCCCGCTACAGCAAGAAGTCCACTCTGTCCTCCAGAGAGATCCA
GACTGCCGTGAGACTTCTCCTTCCCGGAGAACTCTCCAAGCACGCCGTGT
CTGAGGGCACCAAGGCCGTAACCAAGTTCACCTCCTCCAATTAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10081:10441..10734-

>mRNA_D-dudresnayi_contig10081.119.1 ID=mRNA_D-dudresnayi_contig10081.119.1|Name=mRNA_D-dudresnayi_contig10081.119.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at D-dudresnayi_contig10081:10441..10734- (Desmarestia dudresnayi DdudBR16 monoicous)
AGAAAGACCAAGAAGGTTGAGTCCTACGCTTCTTACATCTACAAGGTGCT
GAAGCAGGTTCACCCCAACACTGGCATCTCCAAGAGAGGCATGTCCATCC
TGAACTCCTTCATCAACGATATCTTCGAGCGCCTGGCTCTTGAGGCTTCT
CGTCTGTCCCGCTACAGCAAGAAGTCCACTCTGTCCTCCAGAGAGATCCA
GACTGCCGTGAGACTTCTCCTTCCCGGAGAACTCTCCAAGCACGCCGTGT
CTGAGGGCACCAAGGCCGTAACCAAGTTCACCTCCTCCAATTAAAGAAAG
ACCAAGAAGGTTGAGTCCTACGCTTCTTACATCTACAAGGTGCTGAAGCA
GGTTCACCCCAACACTGGCATCTCCAAGAGAGGCATGTCCATCCTGAACT
CCTTCATCAACGATATCTTCGAGCGCCTGGCTCTTGAGGCTTCTCGTCTG
TCCCGCTACAGCAAGAAGTCCACTCTGTCCTCCAGAGAGATCCAGACTGC
CGTGAGACTTCTCCTTCCCGGAGAACTCTCCAAGCACGCCGTGTCTGAGG
GCACCAAGGCCGTAACCAAGTTCACCTCCTCCAATTAA
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