mRNA_D-dudresnayi_contig10081.117.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10081.117.1
Unique NamemRNA_D-dudresnayi_contig10081.117.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10081.117.1 vs. uniprot
Match: A0A482SRH6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRH6_9ARCH)

HSP 1 Score: 121 bits (304), Expect = 1.340e-28
Identity = 74/144 (51.39%), Postives = 100/144 (69.44%), Query Frame = 3 
Query:    3 LNKHHNAKISMIAQE----NKALADAIALNSSAVALGGTLGGLAKISTMELIKETVDAEEQRDLEELYFLWDEAIQLYELEEFPGDYEVLNRAAENWYTYRSLVTQRLEVVARTLHER-DYDALIDSQEVIEEGEE--SDEEEE 413
            LNK H AK +++ Q+    N++  + +   SS+     +  GLAKISTMEL++ TVD +EQ+DLE+L+ LWD+AIQLYE E+FPGDYE LN   ENWY YR LV+QRLE++ + L E+ D    I  QEVIEEG+E   D++EE
Sbjct:  662 LNKFHQAKKTLMEQQMDGANRSAINLLLNQSSSNINHASGAGLAKISTMELMRRTVDVDEQQDLEDLFHLWDDAIQLYEQEQFPGDYEKLNIEVENWYAYRGLVSQRLELIFQFLQEQEDLFNEIGGQEVIEEGDELAGDDDEE 805
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BLAST of mRNA_D-dudresnayi_contig10081.117.1 vs. uniprot
Match: A0A7S3MAG1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAG1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.430e-10
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 3 
Query:    3 LNKHHNAKISMIAQENKALADAIALNSSAVALGGTLGGLAKISTMELIKETVDAEE 170
            LNKHH+AKI+MIAQ +KA+ +A  LNSS+VAL   LGGL KISTMELIKETVD EE
Sbjct:  125 LNKHHHAKINMIAQNSKAM-EAATLNSSSVAL---LGGLNKISTMELIKETVDIEE 176
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10081.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A482SRH6_9ARCH1.340e-2851.39Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3MAG1_9STRA1.430e-1073.21Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10081contigD-dudresnayi_contig10081:4731..5796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size564
Cds size531
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10081.117.1prot_D-dudresnayi_contig10081.117.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10081 4763..5796 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927508.7369664-UTR-D-dudresnayi_contig10081:4730..47621622927508.7369664-UTR-D-dudresnayi_contig10081:4730..4762Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10081 4731..4762 +
1690556784.122998-UTR-D-dudresnayi_contig10081:4730..47621690556784.122998-UTR-D-dudresnayi_contig10081:4730..4762Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10081 4731..4762 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927508.7504199-CDS-D-dudresnayi_contig10081:4762..48321622927508.7504199-CDS-D-dudresnayi_contig10081:4762..4832Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10081 4763..4832 +
1690556784.1344821-CDS-D-dudresnayi_contig10081:4762..48321690556784.1344821-CDS-D-dudresnayi_contig10081:4762..4832Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10081 4763..4832 +
1622927508.7657187-CDS-D-dudresnayi_contig10081:5010..51621622927508.7657187-CDS-D-dudresnayi_contig10081:5010..5162Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10081 5011..5162 +
1690556784.1452317-CDS-D-dudresnayi_contig10081:5010..51621690556784.1452317-CDS-D-dudresnayi_contig10081:5010..5162Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10081 5011..5162 +
1622927508.7746148-CDS-D-dudresnayi_contig10081:5282..54021622927508.7746148-CDS-D-dudresnayi_contig10081:5282..5402Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10081 5283..5402 +
1690556784.153787-CDS-D-dudresnayi_contig10081:5282..54021690556784.153787-CDS-D-dudresnayi_contig10081:5282..5402Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10081 5283..5402 +
1622927508.8294036-CDS-D-dudresnayi_contig10081:5607..57961622927508.8294036-CDS-D-dudresnayi_contig10081:5607..5796Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10081 5608..5796 +
1690556784.1648927-CDS-D-dudresnayi_contig10081:5607..57961690556784.1648927-CDS-D-dudresnayi_contig10081:5607..5796Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10081 5608..5796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10081.117.1

>prot_D-dudresnayi_contig10081.117.1 ID=prot_D-dudresnayi_contig10081.117.1|Name=mRNA_D-dudresnayi_contig10081.117.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=177bp
MIAQENKALADAIALNSSAVALGGTLGGLAKISTMELIKETVDAEEQRDL
EELYFLWDEAIQLYELEEFPGDYEVLNRAAENWYTYRSLVTQRLEVVART
LHERDYDALIDSQEVIEEGEESDEEEEDRLLPPGREHKGALGGRISPRLQ
QLQQLSSRKTMANNTTMNTTTASAGGG
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mRNA from alignment at D-dudresnayi_contig10081:4731..5796+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10081.117.1 ID=mRNA_D-dudresnayi_contig10081.117.1|Name=mRNA_D-dudresnayi_contig10081.117.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1066bp|location=Sequence derived from alignment at D-dudresnayi_contig10081:4731..5796+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTCTGAACAAGCATCACAATGCCAAGATTAGCATGATCGCGCAGGAGAAC
AAGGCGCTGGCTGATGCGATTGCGCTGAATTCTAGTGCAGTAGCTCTGGG
AGGTAAGGATTTAATTGGAGCCATTACTGTGTATCGTTATATTGATACAT
ATATTGTGTATACATGCTATATATATGCATACATACCCTATATACATAAT
TCTGTAGCAATTACTGGCAGATACTACTGTCTCTCCTAACACTAACACTT
ACCTACCACACCTTCTACTACTCCTAACAGGCACTCTGGGTGGTCTCGCG
AAAATCTCAACGATGGAGCTGATTAAGGAGACGGTAGACGCTGAGGAGCA
GCGGGATCTCGAGGAGCTTTACTTCTTGTGGGACGAGGCCATCCAGCTGT
ACGAGCTTGAGGAGTTCCCCGGTGACTATGAGGTGAGTGACGGAGTGGAT
GCATATTGTGTATGAATAATTTATTATATACATGCATTAGTCTATTGTAC
TTATAACTTCTTCTATGTATATTTACTGTATTCCTTCTAACCCTCTCATT
AGGTGCTAAACCGCGCCGCTGAGAACTGGTACACATATCGCAGTCTGGTG
ACGCAGCGCCTGGAGGTGGTGGCGCGCACTCTGCACGAGCGAGACTATGA
TGCGCTCATTGACAGCCAGGAGGTAGGTGTACAAGCGCTATATAGTATAA
ACAACCTCTCTCTCTCTGGATAGATAAATATATATATATATATATATACT
GGTGAATATTCTTATATTTTCTACATTGTGTTTTTAAATATATAATTTAA
TTACATTATAATATCATATATATTTACTAAATAACAACTATTACTTGGAT
ACATACCTACTACTACTGCTGCTATAGGTGATTGAAGAAGGTGAAGAATC
CGACGAAGAAGAAGAGGACCGGCTGCTACCCCCGGGCCGGGAGCATAAAG
GGGCTCTGGGAGGTCGAATATCTCCACGATTACAGCAATTACAACAGCTC
TCATCAAGGAAAACTATGGCTAATAATACTACTATGAATACTACTACAGC
ATCTGCTGGTGGGGGT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10081:4731..5796+

>mRNA_D-dudresnayi_contig10081.117.1 ID=mRNA_D-dudresnayi_contig10081.117.1|Name=mRNA_D-dudresnayi_contig10081.117.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at D-dudresnayi_contig10081:4731..5796+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGATCGCGCAGGAGAACAAGGCGCTGGCTGATGCGATTGCGCTGAATTC
TAGTGCAGTAGCTCTGGGAGATGATCGCGCAGGAGAACAAGGCGCTGGCT
GATGCGATTGCGCTGAATTCTAGTGCAGTAGCTCTGGGAGGCACTCTGGG
TGGTCTCGCGAAAATCTCAACGATGGAGCTGATTAAGGAGACGGTAGACG
CTGAGGAGCAGCGGGATCTCGAGGAGCTTTACTTCTTGTGGGACGAGGCC
ATCCAGCTGTACGAGCTTGAGGAGTTCCCCGGTGACTATGAGGCACTCTG
GGTGGTCTCGCGAAAATCTCAACGATGGAGCTGATTAAGGAGACGGTAGA
CGCTGAGGAGCAGCGGGATCTCGAGGAGCTTTACTTCTTGTGGGACGAGG
CCATCCAGCTGTACGAGCTTGAGGAGTTCCCCGGTGACTATGAGGTGCTA
AACCGCGCCGCTGAGAACTGGTACACATATCGCAGTCTGGTGACGCAGCG
CCTGGAGGTGGTGGCGCGCACTCTGCACGAGCGAGACTATGATGCGCTCA
TTGACAGCCAGGAGGTGCTAAACCGCGCCGCTGAGAACTGGTACACATAT
CGCAGTCTGGTGACGCAGCGCCTGGAGGTGGTGGCGCGCACTCTGCACGA
GCGAGACTATGATGCGCTCATTGACAGCCAGGAGGTGATTGAAGAAGGTG
AAGAATCCGACGAAGAAGAAGAGGACCGGCTGCTACCCCCGGGCCGGGAG
CATAAAGGGGCTCTGGGAGGTCGAATATCTCCACGATTACAGCAATTACA
ACAGCTCTCATCAAGGAAAACTATGGCTAATAATACTACTATGAATACTA
CTACAGCATCTGCTGGTGGGGGTGTGATTGAAGAAGGTGAAGAATCCGAC
GAAGAAGAAGAGGACCGGCTGCTACCCCCGGGCCGGGAGCATAAAGGGGC
TCTGGGAGGTCGAATATCTCCACGATTACAGCAATTACAACAGCTCTCAT
CAAGGAAAACTATGGCTAATAATACTACTATGAATACTACTACAGCATCT
GCTGGTGGGGGT
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