mRNA_D-dudresnayi_contig10076.111.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10076.111.1
Unique NamemRNA_D-dudresnayi_contig10076.111.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10076.111.1 vs. uniprot
Match: D7G2A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2A1_ECTSI)

HSP 1 Score: 353 bits (906), Expect = 1.330e-111
Identity = 311/509 (61.10%), Postives = 337/509 (66.21%), Query Frame = 1 
Query:    1 AALLRELVKEMPADKRLSFQTRVANARTKEAVESVLEDYAERLECLALPHARSGEIDLQQVKKVREMAFWGSP-SDKPNSWHEELWATVEARVRDGLLRGNAPGSDGSKSSDKNDFA----GEGKGSRGVGGGGGEVDETPAVVVVDKARALASEEWNKARAVATTSEVFKAMSRTGAGGDAYFALVALFCTADKLVVPVHCQESPITVEFLSGSSADSGSKGQQSXXXXXXXXXXXXXXXXXXXXXXXXXXXAEDVHVVVTVPSTFDIYLRDGRAAVGDKGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGG-----ADASIAVHLVRVKAVVEEEIWG-GRKNGSLGGAXXXXAGYGXXXXXXXXXXXXXAPPTLRFLMETPM-DRASYGGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLLTLTRTERRMRVSMVPEPSVVSEMVRNISRKMGVDMPGPQPPRVLG 1491
            AALLRELVKEMPADKRLSFQTRVANARTKE++ESVLEDYAERLE L LPHARS E+DLQQVKK  + +F G      P +WHEELWAT+EARV + +L G                     G G     VGG G       A  V DKARALA EEWNKARAVATTSEVFKAMSRTGAGGDAYFALVALFCTADKLVVPVHCQESPITVEFL+ SSA +G KG +                             +DVHV+VTVPSTFDIYLRDG  A   +G  G XXXXXXXXXXXXXX XXXXXXXXX              G     ADAS A+HLVRVKAVVEEEIWG GR  G +            XXXXXXXXX    PPTLRFL++    +R +  GSG          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            LL LTRTERRM V++VPEPS VSEMVR+ SRK+GVD+P PQPPRVLG
Sbjct:  175 AALLRELVKEMPADKRLSFQTRVANARTKESIESVLEDYAERLESLVLPHARSREMDLQQVKKTGKRSFSGGALPTSPTTWHEELWATLEARVMESVLSGXXXXXXXXXXXXXXXXXXKSNGRGSTDEAVGGRGA------APAVGDKARALALEEWNKARAVATTSEVFKAMSRTGAGGDAYFALVALFCTADKLVVPVHCQESPITVEFLNRSSAAAGGKGARGRRSKERLSFGKKKGAGKGK--------GDDVHVLVTVPSTFDIYLRDGGTA--GEGADGXXXXXXXXXXXXXXXRXXXXXXXXXKIHRKSSTSSNHSNGDGAAAADASNALHLVRVKAVVEEEIWGLGRAGGGMS-----------XXXXXXXXXEDGTPPTLRFLLDPERHNRRTSAGSGGWPDAPPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------LLALTRTERRMAVTVVPEPSAVSEMVRSFSRKIGVDVPSPQPPRVLG 644
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10076.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2A1_ECTSI1.330e-11161.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10076contigD-dudresnayi_contig10076:8742..11123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_001920.1
Hectar predicted targeting categoryother localisation
Exons3
Model size1497
Cds size1467
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10076.111.1prot_D-dudresnayi_contig10076.111.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10076 8742..11093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927508.0724492-CDS-D-dudresnayi_contig10076:8741..92151622927508.0724492-CDS-D-dudresnayi_contig10076:8741..9215Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10076 8742..9215 -
1690556783.8057427-CDS-D-dudresnayi_contig10076:8741..92151690556783.8057427-CDS-D-dudresnayi_contig10076:8741..9215Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10076 8742..9215 -
1622927508.0866063-CDS-D-dudresnayi_contig10076:9278..101051622927508.0866063-CDS-D-dudresnayi_contig10076:9278..10105Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10076 9279..10105 -
1690556783.8140874-CDS-D-dudresnayi_contig10076:9278..101051690556783.8140874-CDS-D-dudresnayi_contig10076:9278..10105Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10076 9279..10105 -
1622927508.1026073-CDS-D-dudresnayi_contig10076:10927..110931622927508.1026073-CDS-D-dudresnayi_contig10076:10927..11093Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10076 10928..11093 -
1690556783.8213196-CDS-D-dudresnayi_contig10076:10927..110931690556783.8213196-CDS-D-dudresnayi_contig10076:10927..11093Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10076 10928..11093 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927508.1134348-UTR-D-dudresnayi_contig10076:11093..111231622927508.1134348-UTR-D-dudresnayi_contig10076:11093..11123Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10076 11094..11123 -
1690556783.8434737-UTR-D-dudresnayi_contig10076:11093..111231690556783.8434737-UTR-D-dudresnayi_contig10076:11093..11123Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10076 11094..11123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10076.111.1

>prot_D-dudresnayi_contig10076.111.1 ID=prot_D-dudresnayi_contig10076.111.1|Name=mRNA_D-dudresnayi_contig10076.111.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=489bp
MPADKRLSFQTRVANARTKEAVESVLEDYAERLECLALPHARSGEIDLQQ
VKKVREMAFWGSPSDKPNSWHEELWATVEARVRDGLLRGNAPGSDGSKSS
DKNDFAGEGKGSRGVGGGGGEVDETPAVVVVDKARALASEEWNKARAVAT
TSEVFKAMSRTGAGGDAYFALVALFCTADKLVVPVHCQESPITVEFLSGS
SADSGSKGQQSRSSVASWKTSGARAAGGGGGGGRGGRGAEDVHVVVTVPS
TFDIYLRDGRAAVGDKGGSGSGGGGGKTAARNGGGAGGSGVYRKGGGNAG
GGSGGGGHGGADASIAVHLVRVKAVVEEEIWGGRKNGSLGGAGSAGAGYG
GGGGGPKKSIDDDAPPTLRFLMETPMDRASYGGSGSKSSSSGNIGGGGRS
LDSRRSSSDSATAHRAGGGGSRRGGGESPAGTPPPPPPAPLLTLTRTERR
MRVSMVPEPSVVSEMVRNISRKMGVDMPGPQPPRVLGC*
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mRNA from alignment at D-dudresnayi_contig10076:8742..11123-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10076.111.1 ID=mRNA_D-dudresnayi_contig10076.111.1|Name=mRNA_D-dudresnayi_contig10076.111.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2382bp|location=Sequence derived from alignment at D-dudresnayi_contig10076:8742..11123- (Desmarestia dudresnayi DdudBR16 monoicous)
GCCGCGCTGTTGCGAGAGCTGGTGAAAGAGATGCCGGCGGACAAACGGCT
GTCATTCCAGACTCGTGTCGCGAACGCCCGGACGAAGGAGGCCGTTGAGA
GCGTCCTGGAGGACTATGCGGAGCGACTAGAGTGTTTGGCCTTGCCTCAC
GCGCGATCGGGGGAGATTGATCTGCAGCAGGTTAAGAAGGTGAGGGGTTG
GATGGGTTGGCGAGAGAGAGATGGGCAAAAACGATTGCTTTCGACGAAAT
GCTTTTTTTTTTTGTGTGTTCTGTGTGTGTTTTATTTCGGAGTGTACATA
CGGAGTGCGGCATGGATTTATCTTTGGTTTGTATGGTCGGCGATGCTAAA
TTTTGGCTTATTTGGTTTTGTCTTACCGCGAGAGGTTGTTACGGGGGAGT
GGTGAGCTTGCTGGCGGTTTGCTTGTGCTTCGGCGATCGACAGGCCATTC
GTTGGCCACGCGCGTTTTGGTTGACTAATAGCCGGAACGTCCATGTCATC
GCTGAAGCGTTCCAGACTGGTAAATCCGTCCCTTGTTCTCACAGAGGGGG
TGGGGGGGGCATATGGTAAGCATGTGTCCTGTGAGCTTTGGATACCTCTG
TCGAGGAGTCCCTTCGCTCCCCGACCAGGACACAGGTGTGCACCCCATGA
CGTTGTCTAGTATATAGGGCGTCGCGTTCTGAATGTTGAAATACTGAACC
CGCTCTATGGAAACATGATTTGTAGGCGTACTTGTGCTCCGCGAGGAGTT
GCAGCACAAGGGTACAGGTTACAAGACAAGGCACGGGGGAGGGGGGGGGG
TGCCTACTGCAAGTAGTGCCCGTCATCAGCCCACAATGTAGTAGTGTAGC
CTGTTTCCTGCCTGACTCTGGGTTCTCTCGATTGATCGATTCTCCGTTCG
CGTGGTGATTGACCTATCATATTCGCGATTTTTGTTTTCGTACACTTGTT
GTTTTTAACCTATTATAAACAAACACGACAGGACACGGCCCGCGAGCGTG
TGTTTCTGGACGGCGAAGAGATGGCTTTTTGGGGAAGCCCGTCCGACAAG
CCCAACTCCTGGCACGAGGAGCTGTGGGCTACGGTGGAAGCGAGGGTACG
TGACGGGTTGTTGCGCGGCAACGCACCAGGCTCGGACGGCTCAAAGTCAA
GCGATAAAAACGATTTTGCCGGGGAGGGGAAAGGAAGCCGTGGGGTAGGG
GGAGGCGGGGGAGAGGTAGATGAAACGCCAGCCGTAGTAGTAGTTGATAA
GGCGAGAGCTCTTGCCTCCGAAGAGTGGAACAAGGCCCGCGCGGTCGCGA
CAACAAGCGAGGTTTTTAAGGCCATGTCGAGGACCGGGGCGGGCGGGGAC
GCGTATTTTGCCCTCGTGGCTCTCTTTTGCACCGCGGACAAGCTGGTCGT
CCCGGTGCACTGCCAGGAATCTCCCATCACGGTGGAGTTCCTGAGCGGAT
CGTCGGCTGACTCGGGAAGCAAGGGACAACAGTCGCGATCCAGCGTTGCG
AGCTGGAAAACTTCGGGGGCAAGAGCAGCAGGAGGAGGAGGAGGAGGAGG
CAGGGGAGGGAGGGGTGCTGAGGATGTCCACGTCGTCGTCACTGTTCCGA
GCACCTTTGACATATACTTGAGAGACGGGAGAGCCGCGGTTGGTGATAAA
GGAGGCTCTGGCAGTGGCGGTGGCGGGGGTAAGACCGCTGCGCGGAACGG
GGGGGGTGCTGGCGGAAGCGGTGTTTACCGTAAGGGGGGCGGCAACGCAG
GCGGCGGTAGTGGTGGCGGTGGGCACGGCGGGGCGGACGCCTCGATCGCC
GTTCACTTGGTGAGGGTGAAAGCCGTGGTGGAGGAAGAGATATGGGTGGT
GGGGTCTAGCCGCGTTCCTGCGTCGTCGTCGTCGTTGCTGTCTTCTGGGG
CAGGAAAGGGCGGCCGGAAAAATGGCTCTCTCGGTGGCGCCGGTAGTGCT
GGTGCTGGTTATGGTGGTGGCGGCGGCGGTCCGAAGAAGAGTATCGACGA
CGACGCACCGCCGACGCTTCGCTTCCTGATGGAAACCCCGATGGATCGGG
CGAGCTATGGTGGCAGCGGGAGCAAGAGCAGCAGCAGCGGCAACATCGGC
GGCGGTGGTCGGTCGTTGGATTCGAGAAGATCATCTTCCGACTCGGCGAC
TGCTCACAGGGCCGGGGGGGGAGGGAGTAGGAGAGGTGGGGGTGAGTCGC
CCGCGGGAACCCCGCCGCCTCCGCCGCCGGCCCCCCTCTTGACGTTGACC
CGCACGGAGCGACGCATGCGCGTGTCGATGGTGCCGGAACCTTCGGTCGT
TTCGGAAATGGTGAGAAATATTTCGCGCAAGATGGGCGTCGACATGCCGG
GACCGCAACCTCCCAGAGTTTTGGGGTGCTGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10076:8742..11123-

>mRNA_D-dudresnayi_contig10076.111.1 ID=mRNA_D-dudresnayi_contig10076.111.1|Name=mRNA_D-dudresnayi_contig10076.111.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=2934bp|location=Sequence derived from alignment at D-dudresnayi_contig10076:8742..11123- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCCGGCGGACAAACGGCTGTCATTCCAGACTCGTGTCGCGAACGCCCG
GACGAAGGAGGCCGTTGAGAGCGTCCTGGAGGACTATGCGGAGCGACTAG
AGTGTTTGGCCTTGCCTCACGCGCGATCGGGGGAGATTGATCTGCAGCAG
GTTAAGAAGGTGAGGGATGCCGGCGGACAAACGGCTGTCATTCCAGACTC
GTGTCGCGAACGCCCGGACGAAGGAGGCCGTTGAGAGCGTCCTGGAGGAC
TATGCGGAGCGACTAGAGTGTTTGGCCTTGCCTCACGCGCGATCGGGGGA
GATTGATCTGCAGCAGGTTAAGAAGGTGAGGGAGATGGCTTTTTGGGGAA
GCCCGTCCGACAAGCCCAACTCCTGGCACGAGGAGCTGTGGGCTACGGTG
GAAGCGAGGGTACGTGACGGGTTGTTGCGCGGCAACGCACCAGGCTCGGA
CGGCTCAAAGTCAAGCGATAAAAACGATTTTGCCGGGGAGGGGAAAGGAA
GCCGTGGGGTAGGGGGAGGCGGGGGAGAGGTAGATGAAACGCCAGCCGTA
GTAGTAGTTGATAAGGCGAGAGCTCTTGCCTCCGAAGAGTGGAACAAGGC
CCGCGCGGTCGCGACAACAAGCGAGGTTTTTAAGGCCATGTCGAGGACCG
GGGCGGGCGGGGACGCGTATTTTGCCCTCGTGGCTCTCTTTTGCACCGCG
GACAAGCTGGTCGTCCCGGTGCACTGCCAGGAATCTCCCATCACGGTGGA
GTTCCTGAGCGGATCGTCGGCTGACTCGGGAAGCAAGGGACAACAGTCGC
GATCCAGCGTTGCGAGCTGGAAAACTTCGGGGGCAAGAGCAGCAGGAGGA
GGAGGAGGAGGAGGCAGGGGAGGGAGGGGTGCTGAGGATGTCCACGTCGT
CGTCACTGTTCCGAGCACCTTTGACATATACTTGAGAGACGGGAGAGCCG
CGGTTGGTGATAAAGGAGGCTCTGGCAGTGGCGGTGGCGGGGGTAAGACC
GCTGCGCGGAACGGGGGGGGTGCTGGCGGAAGCGGTGTTTACCGTAAGGG
GGGCGGCAACGCAGGCGGCGGTAGTGGTGGCGGTGGGCACGGCGGGGCGG
ACGCCTCGATCGCCGTTCACTTGGTGAGGGTGAAAGCCGTGGTGGAGGAA
GAGATATGGAGATGGCTTTTTGGGGAAGCCCGTCCGACAAGCCCAACTCC
TGGCACGAGGAGCTGTGGGCTACGGTGGAAGCGAGGGTACGTGACGGGTT
GTTGCGCGGCAACGCACCAGGCTCGGACGGCTCAAAGTCAAGCGATAAAA
ACGATTTTGCCGGGGAGGGGAAAGGAAGCCGTGGGGTAGGGGGAGGCGGG
GGAGAGGTAGATGAAACGCCAGCCGTAGTAGTAGTTGATAAGGCGAGAGC
TCTTGCCTCCGAAGAGTGGAACAAGGCCCGCGCGGTCGCGACAACAAGCG
AGGTTTTTAAGGCCATGTCGAGGACCGGGGCGGGCGGGGACGCGTATTTT
GCCCTCGTGGCTCTCTTTTGCACCGCGGACAAGCTGGTCGTCCCGGTGCA
CTGCCAGGAATCTCCCATCACGGTGGAGTTCCTGAGCGGATCGTCGGCTG
ACTCGGGAAGCAAGGGACAACAGTCGCGATCCAGCGTTGCGAGCTGGAAA
ACTTCGGGGGCAAGAGCAGCAGGAGGAGGAGGAGGAGGAGGCAGGGGAGG
GAGGGGTGCTGAGGATGTCCACGTCGTCGTCACTGTTCCGAGCACCTTTG
ACATATACTTGAGAGACGGGAGAGCCGCGGTTGGTGATAAAGGAGGCTCT
GGCAGTGGCGGTGGCGGGGGTAAGACCGCTGCGCGGAACGGGGGGGGTGC
TGGCGGAAGCGGTGTTTACCGTAAGGGGGGCGGCAACGCAGGCGGCGGTA
GTGGTGGCGGTGGGCACGGCGGGGCGGACGCCTCGATCGCCGTTCACTTG
GTGAGGGTGAAAGCCGTGGTGGAGGAAGAGATATGGGGCGGCCGGAAAAA
TGGCTCTCTCGGTGGCGCCGGTAGTGCTGGTGCTGGTTATGGTGGTGGCG
GCGGCGGTCCGAAGAAGAGTATCGACGACGACGCACCGCCGACGCTTCGC
TTCCTGATGGAAACCCCGATGGATCGGGCGAGCTATGGTGGCAGCGGGAG
CAAGAGCAGCAGCAGCGGCAACATCGGCGGCGGTGGTCGGTCGTTGGATT
CGAGAAGATCATCTTCCGACTCGGCGACTGCTCACAGGGCCGGGGGGGGA
GGGAGTAGGAGAGGTGGGGGTGAGTCGCCCGCGGGAACCCCGCCGCCTCC
GCCGCCGGCCCCCCTCTTGACGTTGACCCGCACGGAGCGACGCATGCGCG
TGTCGATGGTGCCGGAACCTTCGGTCGTTTCGGAAATGGTGAGAAATATT
TCGCGCAAGATGGGCGTCGACATGCCGGGACCGCAACCTCCCAGAGTTTT
GGGGTGCTGAGGCGGCCGGAAAAATGGCTCTCTCGGTGGCGCCGGTAGTG
CTGGTGCTGGTTATGGTGGTGGCGGCGGCGGTCCGAAGAAGAGTATCGAC
GACGACGCACCGCCGACGCTTCGCTTCCTGATGGAAACCCCGATGGATCG
GGCGAGCTATGGTGGCAGCGGGAGCAAGAGCAGCAGCAGCGGCAACATCG
GCGGCGGTGGTCGGTCGTTGGATTCGAGAAGATCATCTTCCGACTCGGCG
ACTGCTCACAGGGCCGGGGGGGGAGGGAGTAGGAGAGGTGGGGGTGAGTC
GCCCGCGGGAACCCCGCCGCCTCCGCCGCCGGCCCCCCTCTTGACGTTGA
CCCGCACGGAGCGACGCATGCGCGTGTCGATGGTGCCGGAACCTTCGGTC
GTTTCGGAAATGGTGAGAAATATTTCGCGCAAGATGGGCGTCGACATGCC
GGGACCGCAACCTCCCAGAGTTTTGGGGTGCTGA
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