mRNA_D-dudresnayi_contig10064.102.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10064.102.1
Unique NamemRNA_D-dudresnayi_contig10064.102.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig10064.102.1 vs. uniprot
Match: A0A4R0MPM8_9SPHI (Carbohydrate-binding protein n=1 Tax=Pedobacter frigiditerrae TaxID=2530452 RepID=A0A4R0MPM8_9SPHI)

HSP 1 Score: 53.1 bits (126), Expect = 3.280e-6
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 1 
Query:    1 WDDSVENLAGGGSRNAS-VDVEAGADGTFHVGFGVPGEWLKYTVYVPEGGVFNITARYATLADSTALAITVD 213
            + DS    +G   R +  VDV+   DG ++VG+ V GEWL YT++VPE   + IT RYA    ++ + +  D
Sbjct:  485 YHDSTTGNSGSSYRTSEDVDVQTCTDGGYNVGWTVTGEWLTYTIHVPETKNYEITIRYAASVSTSKIRLEFD 556
[Close]
BLAST of mRNA_D-dudresnayi_contig10064.102.1 vs. uniprot
Match: A0A2N1VUP5_9BACT (Glycoside hydrolase family 5 n=1 Tax=Ignavibacteriae bacterium HGW-Ignavibacteriae-2 TaxID=2013809 RepID=A0A2N1VUP5_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 1.130e-5
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   28 GGGSRNASVDVEAGAD---GTFHVGFGVPGEWLKYTVYVPEGGVFNITARYA 174
            GG  RN  VD+E   D     F+VG+   GEWLKYTV VPE G FN++ RYA
Sbjct:  434 GGIYRNDGVDIEPCTDQLTNGFNVGWIESGEWLKYTVDVPETGYFNLSIRYA 485
[Close]
BLAST of mRNA_D-dudresnayi_contig10064.102.1 vs. uniprot
Match: UPI001EE94367 (cellulase family glycosylhydrolase n=1 Tax=Lewinella maritima TaxID=1383882 RepID=UPI001EE94367)

HSP 1 Score: 50.8 bits (120), Expect = 2.150e-5
Identity = 25/74 (33.78%), Postives = 39/74 (52.70%), Query Frame = 1 
Query:    4 DDSVENLAGGGSRNASVDVEAGADGTFHVGFGVPGEWLKYTVYVPEGGVFNITARYATLADSTALAITVDDGTN 225
            D   EN+      +  VD+     G F VG+   GEWL+YTV VPE G F ++A  A+   + +L ++   G++
Sbjct:  450 DSEAENIPNEYRTDEGVDIGGNGSGGFAVGYVARGEWLEYTVLVPEAGAFAVSAALASEQGNGSLKVSASGGSS 523
[Close]
BLAST of mRNA_D-dudresnayi_contig10064.102.1 vs. uniprot
Match: B8GHS0_METPE (Probable pectate lyase C n=2 Tax=Methanosphaerula palustris TaxID=475088 RepID=B8GHS0_METPE)

HSP 1 Score: 49.7 bits (117), Expect = 5.490e-5
Identity = 31/80 (38.75%), Postives = 41/80 (51.25%), Query Frame = 1 
Query:    1 WDDSVENLAGGGSRNASVDVEAGADGTFHVGFGVPGEWLKYTVYVPEGGVFNITARYATLADSTALAITVDDGTNLACDR 240
            + D+     GG  R   VD+E    G  +VG    GEWL YT+ VPEGG + +TAR AT  +     I+V+  T  A  R
Sbjct:  600 YHDTTPGNTGGAYRQDDVDIET-TGGITYVGGIQDGEWLIYTLNVPEGGAYLMTARVATPNEGLMARISVNSETMFALIR 678
[Close]
BLAST of mRNA_D-dudresnayi_contig10064.102.1 vs. uniprot
Match: A0A1Z7ZCP6_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium 42_54_T18 TaxID=1856293 RepID=A0A1Z7ZCP6_9GAMM)

HSP 1 Score: 49.3 bits (116), Expect = 7.510e-5
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:    7 DSVENLAGGGSRNASVDVEAGAD--GTFHVGFGVPGEWLKYTVYVPEGGVFNITARYATLADSTAL 198
            D+     GG  R   VD+EA  D  G + VG+  PGE+L+YT+ VPE G + + +R +T+ +S + 
Sbjct:  127 DTTPGNTGGTYRQEDVDIEATTDIGGGYSVGWVSPGEYLRYTISVPESGEYLLRSRVSTIKNSRSF 192
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10064.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4R0MPM8_9SPHI3.280e-637.50Carbohydrate-binding protein n=1 Tax=Pedobacter fr... [more]
A0A2N1VUP5_9BACT1.130e-553.85Glycoside hydrolase family 5 n=1 Tax=Ignavibacteri... [more]
UPI001EE943672.150e-533.78cellulase family glycosylhydrolase n=1 Tax=Lewinel... [more]
B8GHS0_METPE5.490e-538.75Probable pectate lyase C n=2 Tax=Methanosphaerula ... [more]
A0A1Z7ZCP6_9GAMM7.510e-537.88Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10064contigD-dudresnayi_contig10064:5466..6574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size251
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927507.2511468-CDS-D-dudresnayi_contig10064:5465..56081622927507.2511468-CDS-D-dudresnayi_contig10064:5465..5608Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10064 5466..5608 -
1690556783.417131-CDS-D-dudresnayi_contig10064:5465..56081690556783.417131-CDS-D-dudresnayi_contig10064:5465..5608Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10064 5466..5608 -
1622927507.2646086-CDS-D-dudresnayi_contig10064:6468..65741622927507.2646086-CDS-D-dudresnayi_contig10064:6468..6574Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10064 6469..6574 -
1690556783.4279237-CDS-D-dudresnayi_contig10064:6468..65741690556783.4279237-CDS-D-dudresnayi_contig10064:6468..6574Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10064 6469..6574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10064.102.1prot_D-dudresnayi_contig10064.102.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10064 5466..6574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10064.102.1

>prot_D-dudresnayi_contig10064.102.1 ID=prot_D-dudresnayi_contig10064.102.1|Name=mRNA_D-dudresnayi_contig10064.102.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=83bp
WDDSVENLAGGGSRNASVDVEAGADGTFHVGFGVPGEWLKYTVYVPEGGV
FNITARYATLADSTALAITVDDGTNLACDRDSD
back to top

mRNA from alignment at D-dudresnayi_contig10064:5466..6574-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10064.102.1 ID=mRNA_D-dudresnayi_contig10064.102.1|Name=mRNA_D-dudresnayi_contig10064.102.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1109bp|location=Sequence derived from alignment at D-dudresnayi_contig10064:5466..6574- (Desmarestia dudresnayi DdudBR16 monoicous)
TGGGACGACAGCGTGGAAAATCTTGCAGGGGGGGGATCTCGCAATGCGTC
GGTGGACGTAGAGGCTGGCGCTGACGGGACGTTCCACGTGGGATTCGGGG
TGCCCGGTACGTTCCACATGTTACTCCGAGTACAACATATCACAGTAAAA
CACAAGGTCTTACGTGCTACCTTACGGCGTGCCCCGAAAGTGCAGTGAGT
CGGTTGTTATGAGCACAGCTTTTTTTTTTGGGTCAGGGTTAGGGTTAGAG
TTAAGGTTTGGTTTAGGAAAGGAAATACAAGCGGTGAAGGCTGCCGCGCA
AACATGCAAAAAAAACAAAACGTCAAATCACATATTCCAATACTCTTGTC
ACATCCAAATCACATGCAGGTGTGTTGCGTTTGTGTGTATTTTTTTAATC
GAAAATCGTAGAGTGTCCCGGTTTCAGTATATATAGTGTATCGCATGCTA
TTCCGCCGGGCCTCTTGTAGTAGAGGGTCTCGTTGAAGGCGTAGAACAAC
AAGCCTTCAGACCATCGCGCCTTTCAATATGATAATTCTATGTATGTCAT
CCCTCACCATAGCGCGCACGATTCCAAGCAAAAGCAAGCCTTATTGGGAC
AAAAAAGAAAACCATAATGAATTTAGTTAATAACGAACTTAGTTAATACC
CTAGTTTTCACTAAGCGAGCAGAAAATAGCACGTGATATGCTCCGCCAGC
TACAGCCAGCTTTCATGTGAGAGACTCAACAACAAAGCATAGCTATATAG
CACGCGAAACGATCTTCCAGAGATACAGCCAGCCTCCGCGTGAGAGAGAC
CCAACAACCAAGCAATACCGGACTCTGCGTAAAACTGCAGAAACAAAACA
CCCACCCACCAAACACCCACCCACCCCAAAAAAGTTGTGTTTACTACTGT
TTGACCCGCCGTCCGTCCCCCGAAAACCATGACGTCACTGCCGCATGATG
ACGTCACTGCTGCCAGGCGAATGGCTCAAGTACACCGTGTACGTCCCGGA
GGGCGGAGTGTTCAACATTACGGCCCGATACGCGACGCTTGCCGACAGCA
CGGCGCTAGCCATAACGGTAGACGACGGGACTAACCTCGCGTGCGACAGA
GACTCGGAC
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10064:5466..6574-

>mRNA_D-dudresnayi_contig10064.102.1 ID=mRNA_D-dudresnayi_contig10064.102.1|Name=mRNA_D-dudresnayi_contig10064.102.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at D-dudresnayi_contig10064:5466..6574- (Desmarestia dudresnayi DdudBR16 monoicous)
TGGGACGACAGCGTGGAAAATCTTGCAGGGGGGGGATCTCGCAATGCGTC
GGTGGACGTAGAGGCTGGCGCTGACGGGACGTTCCACGTGGGATTCGGGG
TGCCCGTGGGACGACAGCGTGGAAAATCTTGCAGGGGGGGGATCTCGCAA
TGCGTCGGTGGACGTAGAGGCTGGCGCTGACGGGACGTTCCACGTGGGAT
TCGGGGTGCCCGGCGAATGGCTCAAGTACACCGTGTACGTCCCGGAGGGC
GGAGTGTTCAACATTACGGCCCGATACGCGACGCTTGCCGACAGCACGGC
GCTAGCCATAACGGTAGACGACGGGACTAACCTCGCGTGCGACAGAGACT
CGGACGCGAATGGCTCAAGTACACCGTGTACGTCCCGGAGGGCGGAGTGT
TCAACATTACGGCCCGATACGCGACGCTTGCCGACAGCACGGCGCTAGCC
ATAACGGTAGACGACGGGACTAACCTCGCGTGCGACAGAGACTCGGAC
back to top