mRNA_D-dudresnayi_contig10057.92.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10057.92.1
Unique NamemRNA_D-dudresnayi_contig10057.92.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10057.92.1 vs. uniprot
Match: D8LCR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR1_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 2.700e-26
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    1 LCRRHSDGLLAPFMPDLHPDAVLILEDDANLKPRFLERARAAMMQAGAVERSTLKRKYGAEKEWDIIYLGHIIPFEIMSGINRAT 255
            L RRH D  LAPFMP++HPDAVLILEDDA L+P FLE A+A M+QA A++    K+  G  KEWDIIYLGHI+P  IM GI RA+
Sbjct:  829 LWRRHRDSKLAPFMPEVHPDAVLILEDDAKLEPGFLEAAKATMLQAAAMDTVRKKKSIGLSKEWDIIYLGHILPVPIMDGIARAS 913
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BLAST of mRNA_D-dudresnayi_contig10057.92.1 vs. uniprot
Match: A0A6H5KX61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX61_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 5.730e-26
Identity = 53/85 (62.35%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    1 LCRRHSDGLLAPFMPDLHPDAVLILEDDANLKPRFLERARAAMMQAGAVERSTLKRKYGAEKEWDIIYLGHIIPFEIMSGINRAT 255
            L RRH D  LAPFMP++HPDAVLILEDDA L+P FL+ A+A M+QA A++    K+  G  KEWDIIYLGHI+P  IM GI RA+
Sbjct:  256 LWRRHRDSKLAPFMPEVHPDAVLILEDDAKLEPGFLKAAKATMLQAAAMDTVRKKKSIGLSKEWDIIYLGHILPVPIMDGIARAS 340
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10057.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCR1_ECTSI2.700e-2663.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX61_9PHAE5.730e-2662.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10057contigD-dudresnayi_contig10057:7033..11114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size459
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10057.92.1prot_D-dudresnayi_contig10057.92.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10057 7033..8726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927506.156641-CDS-D-dudresnayi_contig10057:7032..72741622927506.156641-CDS-D-dudresnayi_contig10057:7032..7274Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10057 7033..7274 -
1690556782.8126929-CDS-D-dudresnayi_contig10057:7032..72741690556782.8126929-CDS-D-dudresnayi_contig10057:7032..7274Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10057 7033..7274 -
1622927506.1782126-CDS-D-dudresnayi_contig10057:8683..87261622927506.1782126-CDS-D-dudresnayi_contig10057:8683..8726Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10057 8684..8726 -
1690556782.8206832-CDS-D-dudresnayi_contig10057:8683..87261690556782.8206832-CDS-D-dudresnayi_contig10057:8683..8726Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10057 8684..8726 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927506.2015224-UTR-D-dudresnayi_contig10057:8726..87361622927506.2015224-UTR-D-dudresnayi_contig10057:8726..8736Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10057 8727..8736 -
1690556782.830401-UTR-D-dudresnayi_contig10057:8726..87361690556782.830401-UTR-D-dudresnayi_contig10057:8726..8736Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10057 8727..8736 -
1622927506.2154896-UTR-D-dudresnayi_contig10057:9583..96441622927506.2154896-UTR-D-dudresnayi_contig10057:9583..9644Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10057 9584..9644 -
1690556782.839814-UTR-D-dudresnayi_contig10057:9583..96441690556782.839814-UTR-D-dudresnayi_contig10057:9583..9644Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10057 9584..9644 -
1622927506.2258787-UTR-D-dudresnayi_contig10057:11013..111141622927506.2258787-UTR-D-dudresnayi_contig10057:11013..11114Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10057 11014..11114 -
1690556782.84864-UTR-D-dudresnayi_contig10057:11013..111141690556782.84864-UTR-D-dudresnayi_contig10057:11013..11114Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10057 11014..11114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10057.92.1

>prot_D-dudresnayi_contig10057.92.1 ID=prot_D-dudresnayi_contig10057.92.1|Name=mRNA_D-dudresnayi_contig10057.92.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=95bp
MARRRNGTSSTLDTSSLLKSCPASTVPRQSQHRTRQHLNRRQKAPPVETA
RKPRQQPPPPSPPPLPKTLEQRQRQQQQQRGMTIPKHPRLGFLLP
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mRNA from alignment at D-dudresnayi_contig10057:7033..11114-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10057.92.1 ID=mRNA_D-dudresnayi_contig10057.92.1|Name=mRNA_D-dudresnayi_contig10057.92.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4082bp|location=Sequence derived from alignment at D-dudresnayi_contig10057:7033..11114- (Desmarestia dudresnayi DdudBR16 monoicous)
TTGTGTCGCAGGCACAGCGATGGTCTTTTGGCTCCGTTTATGCCGGACCT
GCACCCTGATGCCGTGCTGATTCTCGAGGACGACGCCAACCTCAAGCCCA
GGTGTGTGTGTGTGTGTGTGGTATGGGGTGGGGGTTGCGCGTTACGTGCG
CGGATGCGGAATTAACGGCGTCGTGTCGTGTGTAAATGTATTTTGGTTAT
TTGGTTTGTTGATTGATTAATTGATTGGGTTTTGTTTATTGATTTATTGA
TTTACGAAGTATTGATTGGTGGGTTGGCTCATAGTTGTCGAACGATAGTT
GTCGAACGAAACGACTCGCAAGGCGGTGGACCAACACTCGTTAGCGTTGT
ATGGTCGGATAGTCGGAGACCGCCGGTTCGCGGATTGTAAAAAAATAGAT
AAATAAGTAAAGCACGCAACCAGTTGTGCAGCCTCGATTGGGTAGCTATA
TAGTAGCGACTACAGCAGAAGCACTGTGCTGTAATATTGCGTCCCTAGGC
CGCGCCCGCGCGTGGCGCCCCTGCTTGCAGCCACATTACTTCCTTGCCGA
AAAATCGCGAGAAGCTTGGTGCGCGCTGCGTGGAGGCGACATCCGCATTG
CAAGACGTACAACAAACAAAAAAACGAATATGACTACGAATTTGAATATT
TAATGTGGAGCGTTCATCGTTTTTTTCCCGTCAATCTTGTCGCGGCGGAC
CACGGCCATCCATGAACCTTTGGATCTTTGGATCGTCGTAAAGTAAAAAG
CATAAAGTATTGAAGTCATGAAATTCTATATACACGGCTTGGTGATGCGA
TTATTATAGATTAGATCCGCATGTATGCGTGTGTGCATGTGTGTTCGCAA
ATGCTTTTGTTTTGTTTTTCGTTTTGTGGGGCATTTTCAACAGAGCATGC
ATCGAGGGGAGGGGCTGGCAGTAAACGCTTGGTGTTAAAAGTTTGTCGGC
TTAGCAAACGCATGCTGACGTGTACTCGCCCTTTTGATTGACTAATGGAG
TTAATATATTGACTGATTGATTGATTGATTGATTGATTGATGATTGATTC
AGTAGGTTTAGCACTATGGTTGGTAGCTCGGATCTTTATGAGAGGTTTTG
ACTTGTTATTTGTATAGGTGTGTTCGTTAGGGTTAGGGCTCGTAAAAGAT
TTTTCCGAACTGCTGGAACAAACAGCCCAGGTTGTTCCTAAATAATACAA
TAAAGCGAACCCGAGCTATCAAAACGTTATAGCGGCTCGATTGATTAGTT
GATTAGTTGATTTGTTGATTAGTTGGTTGGGCGGTTGGTTTGGTAAGGTT
GGGTTTGGTTTGATGTATTTTTATTTCTTGGAGATTCGAACCCCGACCTT
CCGCCAAGAGAGGTATCAATGGTTGACAGATAGACCATACCATACAGCGC
CGGCTCCTTTTATGGTCCGTGTTTATTTAAGCCTCGTCGTACCCCGTGTT
TTTGTTGGTCATTTAATCAGGTTCCTCGAACGTGCGCGGGCAGCTATGAT
GCAGGCTGGAGCCGTCGAGAGGTCTACTTTGGTGAGAGCCGATGAGCCCC
AGTTGTATCCGTAGCTCTACTCTTTTTCCTACCTACTGTAGCAGAGACGT
GCGTTTTACAGACTAGAGCTTGGGGGCGTGTTTGTATCTTGCCGTGCAGA
ACGTTCGAAAAAAACGTGGAGCTTACGCTAACGAGAATACGCTATCATAG
AATGAAGTACCGTTATAACGATGCCTTGGTTTCACGAGGGCGCGACGTGT
CAAGTAGTTTTTTTCTTTTTTTCATTTGTTTTATAGAAAAGTATGAGGTC
ACACTCCGTCGAAGTGGGCAAGCGCTGAAACCATTGACACGCGTTTGTAT
CGATTATTATTTAGTCTGTTGTTTTAGTTGTTTTAGTCTAGTTGTAGTCT
TTTGTTTTACGCTTTTATTTATATCTTATTTTGTTGTTATATTAGTTGCG
TAGAGAGTTGCTTTTGCCCTGAGGCTGAAGACAAACGACGGTGATGTTGC
AGCGGTTTTTTTCAACCATCGTCGACGGTGGTGTGACGTCATGCAGTGGG
AAATTTATTTGGCCGTTTGTGTATCGTTTCGGCGTCCTAGTGGTGTATAA
TGCCATATCAGCAAGCCTGCCCCCCCCCCCCCCCCCCTCCGTTTAGCTAG
TGTCGAACGTATATCTGGCGTTGGCAACACTCAAAGGCGTAAGTAAAGAA
GCGAATTTATATATGTTGTGTGTGAGTCCACCATTCTCGTACAGGCATCA
ATCGGTTATCTTGCCTTCTTTGGGGGGCTCGCACGTGGCGCTTTTGTCGC
AGCTCCTTACAATCTTGGTGTCCATCCCTTGTGCTCGTGTGTGTTGTTTT
TTTGGGGGGGGGGGGGGGGGGCGTGTAGAAGCGAAAATATGGCGCGGAGA
AGGAATGGGACATCATCTACCTTGGACACATGTGAGAAACGGCGCCAAAA
CTTCGCGATGCGATGTGATGTGATGCGATGCCATGCGATGCCATGCGATG
CCATGTGGTTTCTAAGCAGGAGGCTTTTACAACGTGTTCGGGAGGCTGGT
TTTATTTTTTATTTACTTGGTTTTAGTATGGTGCGGTCGTTAGGTTAGGG
TTAGGGTTAGTTGCTAGAAAACGATCCGCACTGCTGAACAGCCTACGTTG
GCACTATTAGTATAATAAAACGACCATCCATGTGTAGATCCCCTCGACCA
AAGTTGTAAAGCAGGCTCTTTCTAAGACCGGCTTTGAGAGGCGCTGGAGT
CCGAAACATACAGAGGAGCTTGATATATATATATATATATATTATGTACA
GAAAGTACAGGGCGTCTGTTTTTAATGAGAAACAAAATTGGTTGGTAGGA
AACCCACGGTGAGATTTGTGGGGAAGTAAGAAGTTCCGGCACGGTTAATA
CTGAAGCTGGTGTAAGACGCACCCGTTTTGCCCTTGTTATGTCGTAGTAA
GGAATGCAGCCTGGATCAGGACCATTCTTGTTGTTGTTGGGTGTCCTCAA
CTGTATATTATTTTGCTCAGCGTGTCGATGAAAGTCGGCGGGCTATTTTA
CGGTACTGCCGAACCCTGTGCACGATAAAACAATGGTATATACTGGGAGG
GAGAAGGAAAGACACCTGGGATCCCGGCTTATTGTTCAGGCAGGCGCGCT
GTGTGATGAAAAGGAAAAGCTCTTGTGAGCTATGGACTGGGACGCTAAAG
TGATGGATAACAAAAAAAAAAGTGTAGACAGGTTGCCGGTGTTTGCGCTC
TGGATGGTTTAGATGTGTATGGTCGTTTCGTAAGGCGTCATGTTGCTTTG
CGGAGAAAGAAAAAATGGGAGGGAAAAGTTAGCCTTCTGTCGCCGAGAGT
AGGCCGGTGAGTCCTAAATCTAGAGTACGCTCCCTTCTTGTTTTTGTGCG
AGCATCTAGATATACCCGATAGCGGATTTACTTGAGCGGGTAAACGGTAA
AAAAGACATTGGTTGCGTCAATTTTTTTTGGCTGGATTTTTTGTGTTGTT
GTATTTTACCACACTGCCATTATATGACACGATACAATGACTCGAACGCA
ACATGTTGATTGTTCCTATCTCTCTTCTCTCTCTCTCTCTCTATCTCTCA
TCGCGTGCAGCGCCGTTTTCACCGCTAGAACCACGTAACCTTACTTTTTT
ATATATTTTTTTGTTGCTGCTTTATTTGTGTTATGCTAGTGAGAGCGCGA
GTCTTAGATTTAGATTTGTCACCACCCGCGGCTCCTCTCCCGTCCCCTCT
TACTCTCCGCCTCACTCTATTTTGTCCCGCCCCCGTTATTGCCCCCCCCC
CACCCCACCCCCCTCTCCCTCTCGCTTCCGCTTATTCCAGCATCCCTTTT
GAAATCATGTCCGGCATCAACCGTGCCACGGCAAAGTCAACACCGGACGC
GGCAGCATCTCAACCGGCGACAGAAAGCGCCTCCAGTGGAAACCGCCAGG
AAACCCCGACAACAACCTCCTCCTCCCTCGCCGCCGCCGCTCCCGAAAAC
CCTCGAGCAGCGGCAGCGGCAACAGCAGCAGCAGCGGGGGATGACGATTC
CCAAACACCCGCGGTTGGGTTTCCTGCTTCCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10057:7033..11114-

>mRNA_D-dudresnayi_contig10057.92.1 ID=mRNA_D-dudresnayi_contig10057.92.1|Name=mRNA_D-dudresnayi_contig10057.92.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at D-dudresnayi_contig10057:7033..11114- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCGCGGAGAAGGAATGGGACATCATCTACCTTGGACACATATGGCGC
GGAGAAGGAATGGGACATCATCTACCTTGGACACATCATCCCTTTTGAAA
TCATGTCCGGCATCAACCGTGCCACGGCAAAGTCAACACCGGACGCGGCA
GCATCTCAACCGGCGACAGAAAGCGCCTCCAGTGGAAACCGCCAGGAAAC
CCCGACAACAACCTCCTCCTCCCTCGCCGCCGCCGCTCCCGAAAACCCTC
GAGCAGCGGCAGCGGCAACAGCAGCAGCAGCGGGGGATGACGATTCCCAA
ACACCCGCGGTTGGGTTTCCTGCTTCCGCATCCCTTTTGAAATCATGTCC
GGCATCAACCGTGCCACGGCAAAGTCAACACCGGACGCGGCAGCATCTCA
ACCGGCGACAGAAAGCGCCTCCAGTGGAAACCGCCAGGAAACCCCGACAA
CAACCTCCTCCTCCCTCGCCGCCGCCGCTCCCGAAAACCCTCGAGCAGCG
GCAGCGGCAACAGCAGCAGCAGCGGGGGATGACGATTCCCAAACACCCGC
GGTTGGGTTTCCTGCTTCCG
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