mRNA_D-dudresnayi_contig10049.86.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10049.86.1
Unique NamemRNA_D-dudresnayi_contig10049.86.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10049.86.1 vs. uniprot
Match: D7G0I8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0I8_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.640e-13
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 2 
Query:  125 WNAMYRDECDRDTITRRHSPVCTEIMMKGYRCMKKSHGDRSQCQDLFDALTQCRYPD 295
            WN  Y  +   +   RRHSPVCTE  M+GYRC+K+S+G RSQCQ+L +A+ QCR P+
Sbjct:    4 WNRQY--DRQHEANKRRHSPVCTEATMRGYRCLKRSNGVRSQCQELLNAVYQCRSPE 58
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10049.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0I8_ECTSI1.640e-1354.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10049contigD-dudresnayi_contig10049:407..3386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size527
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10049.86.1prot_D-dudresnayi_contig10049.86.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10049 412..3239 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927505.5518641-UTR-D-dudresnayi_contig10049:406..4111622927505.5518641-UTR-D-dudresnayi_contig10049:406..411Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10049 407..411 -
1690556782.391594-UTR-D-dudresnayi_contig10049:406..4111690556782.391594-UTR-D-dudresnayi_contig10049:406..411Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10049 407..411 -
1622927505.593765-UTR-D-dudresnayi_contig10049:3239..33861622927505.593765-UTR-D-dudresnayi_contig10049:3239..3386Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10049 3240..3386 -
1690556782.4312963-UTR-D-dudresnayi_contig10049:3239..33861690556782.4312963-UTR-D-dudresnayi_contig10049:3239..3386Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10049 3240..3386 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927505.566615-CDS-D-dudresnayi_contig10049:411..7061622927505.566615-CDS-D-dudresnayi_contig10049:411..706Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10049 412..706 -
1690556782.4013-CDS-D-dudresnayi_contig10049:411..7061690556782.4013-CDS-D-dudresnayi_contig10049:411..706Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10049 412..706 -
1622927505.575694-CDS-D-dudresnayi_contig10049:2952..29951622927505.575694-CDS-D-dudresnayi_contig10049:2952..2995Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10049 2953..2995 -
1690556782.4099038-CDS-D-dudresnayi_contig10049:2952..29951690556782.4099038-CDS-D-dudresnayi_contig10049:2952..2995Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10049 2953..2995 -
1622927505.5849297-CDS-D-dudresnayi_contig10049:3202..32391622927505.5849297-CDS-D-dudresnayi_contig10049:3202..3239Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10049 3203..3239 -
1690556782.4225273-CDS-D-dudresnayi_contig10049:3202..32391690556782.4225273-CDS-D-dudresnayi_contig10049:3202..3239Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10049 3203..3239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10049.86.1

>prot_D-dudresnayi_contig10049.86.1 ID=prot_D-dudresnayi_contig10049.86.1|Name=mRNA_D-dudresnayi_contig10049.86.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=125bp
MRPRHHHAQTLAGVHGNHDEGLPVHEKVPWRQEPMPRPVRCAHAVPLPGS
YRQPTRPVDLTMKDAAVYCTRLCRRVTHRTNHNNKIKRCMPRLCSRKACA
FFFLPQVYFRGLRFASVLYYAESM*
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mRNA from alignment at D-dudresnayi_contig10049:407..3386-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10049.86.1 ID=mRNA_D-dudresnayi_contig10049.86.1|Name=mRNA_D-dudresnayi_contig10049.86.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2980bp|location=Sequence derived from alignment at D-dudresnayi_contig10049:407..3386- (Desmarestia dudresnayi DdudBR16 monoicous)
TTCACTACTCTTGACACGGCGAGTGCGCGGCTGCATGCAAAGAGCGAGGT
CACAACAAGTCTTCTACAGCAACCAAAAAACGAGCAAAACGATGTTGAAC
GAGTCCCCGCAGAGAAAGCTGACATGGAATGCCATGTATCGTGACGAATG
CGACCGCGACACCATCACGCGCAGACACTCGCCGGTAAGTCCTGGTGTCC
GGACACCTGCGCCCGTGCGCGCTGGTTGAAAAGAGGGGCGGAAGGGAGGG
GCGGGGGGGGGGGAGGGGGTGTTTTTCAAAGCATGAAACATAAGTTGTTC
AGGGAGAACATGCTCCAAATGAAATGTCACATGGTCGTCGTGACCTGTAG
ACCTGACGTGTGTTTTCCTCGCCACCTTTCTCGTGCTTCAGGTGTGCACG
GAAATCATGATGAAGGGCTACCGGTGCATGAAAAGTGAGTTCTGGGTCAT
GGCGTGGTAGTCCTAAGCGTGGTGGATTGCAAGATACGGCGTACTCTCTC
GAAAGCCCAAATTACACGAAGAACATTCTCGATCAACAGACCGTCGTGAT
ACTAATAGTAGTACAAATTCACCACCAGAAAATTCATCTTTCGCCATTTG
ATTTGGTTTTGATTTGATTTGAAAGAATGCAACATAGTATGGGCAAGGAC
AGAGAAAGAACGACACGAGAGAGACACAGATGCTGCCATTTTTGTCGCTG
CTCGCTGCCCATGCATATGTCTCATGAGTCTTCCGGGCTCCACTTGGGGA
GTAGTCTGTTTTTGAGGGTTACGCGAACGGCCGCTACGCGCGCACGTGTC
ACTTCGGCGGTTGAGTTCTTGACACGAGAAGACGGGGGCGCAAGTGTTTT
TTCTGTTGCTTGTCTGTGTGCAGACTATGCTTGGAGATGAGCCGCTCACT
AGGAATCTTGCCGAGACACTTACCTCATCCATTGCTTTTATGTTCTGTGT
GGACTTCTTGCACCGCTGACTACGCTGACCACTTACCACGGAACGTGTAT
CTCCGTACGTAGGAGGAAGAAGAGGAACTATCATATCTATCTGCTATAAG
TACGTACACTGAAAGATGGCTGTGCTGTAATGTCTTTTTGTCAGTCAGCA
CTAGTGTTGTTGTTGTTGTTGTTGTTGTCTTCACATTAAAAGTCGTCCAT
TCCCCTCTACGACATCCACTTGTAGAAATAACAAATATCGAAAACACTTC
AGCCATCATAGAGCTACTAATTTTTATTTTTAGCATGCATTTCCTTCGTC
GGTACATTGCACACACTCTTACCAAATTCTGAATTTCACGAGTACGAGCA
GCACAAGTACTTTTTGTGGGCTCTTTACGAGGCACCCCTATCATACCAGA
TTAAGACTGGAATATATTAGGATGTTGTGTTTTATGCTGTTGTTGGGTGC
CTTTTTCTTACATAAAATCAGCGTTGAGCGTCGACCCAACCCAACCCCAA
CCCCAATCCTAACCCTAAAGTCATCCCACACTAAGGATCGAACCCGGCGC
GGCTTCCCCGCGTCTTTAGATGTGACGTGAACAAAAAAAACAAAAAAGTT
GAAGGAAACACCTTACAACACCCTAAATATATTTCAGTCTTAATCTGGTA
TGTTAAGGGGTGCCAAGAAAGCTCGTGAAGGCTACTGAACAATCGCGCCT
CATCTCGTCCTTTTTTCGTGATTGTTGTGCTACACGACACACGACTTGCA
ACACAGGACACAACTACTACTGTGGTACTCGGTTGCACTGGGCACCAGTC
GATTTAACCTCAGTCATCATTGACACATATGATTAGACCCTGCTGCCAAC
GCTCCGTGCGACGTGTTGGTTCTGTCGGTCGGTCGGCCAGGCGGCCTTTC
TAAGGCTGGCATCGCCTCGCATTTGTGTTTATTATTAGTAGCAGAAGATG
ACGTCTGCACCAGCAAGAAGAATATATAGCAATATTTGGCATAGACAAGA
AACAATCGAAACAAGACCAAGTGTGTAGAAAAGACAAAGCAAAGTGAGTG
TTCCTCTGATGGCCGCTGAGCGAGGTGGTTTCTGTCAACAGACCTATCAT
TTTTCTATCACGCGCGATGTACTGCCGCAGTACTTGTTGTACGAAGCCTT
CCTACAGAGTGTACACAAGCATGTCGTATGATATATAGTTTTGCTGTTTT
AACCCCTGTAAACGTTTGGCACTCCTGATTGGATATGGGCAATGCTGCAA
TCTTACCGATGGGTTGAAGGTACACTGCTTCGACCCTATCATACTACAAC
TTTCTTGTTTTGTTGTACAGGTACTATTACGAGTACTGTTGTTTTGACGT
TTGCACTCTCTTTCGATTTTTGTCGATGTTTCTAGGCGGTGAATGTCGCA
CAAGTACGTGGGCGTTGAGGCGTCTACCCTTGCCCCCCATGCTCGAACCC
GTGTACACGATGCACCTGCACTGATTGCCTCTTGCTATATCGTAAATGTG
CTGTACACATAGTGTACAGCCCTGATACGTATTTCGTATATGCGTATTGC
AGCACTGAATTGCCTAGGTTTTTGGGTTGAAGGCGGTGTGGCCTTTTAAC
TTAAAAGTGTTTCAAACGCGTTTATTTATGTCGAATGTACAAAAAACACG
CACACAAAAGAGTATACAATACGAAACCCCGCCCACCCCCGCCCCCCTCC
TCCCCTAAATATTTCGGAACAATACAACAGAGTCCCATGGCGACAGGAGC
CAATGCCAAGACCTGTTCGATGCGCTCACGCAGTGCCGCTACCCGGATCC
TATCGCCAACCAACGCGACCCGTCGATCTGACAATGAAGGATGCGGCCGT
TTACTGCACTCGGTTGTGTCGCCGCGTGACCCATCGAACGAACCATAATA
ATAAAATAAAAAGGTGTATGCCACGTCTTTGTTCTAGAAAAGCGTGTGCA
TTTTTTTTTCTTCCGCAGGTGTATTTTCGGGGGCTTCGATTCGCGAGTGT
TTTGTATTATGCTGAAAGTATGTAAAGTGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10049:407..3386-

>mRNA_D-dudresnayi_contig10049.86.1 ID=mRNA_D-dudresnayi_contig10049.86.1|Name=mRNA_D-dudresnayi_contig10049.86.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at D-dudresnayi_contig10049:407..3386- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCGACCGCGACACCATCACGCGCAGACACTCGCCGATGCGACCGCGAC
ACCATCACGCGCAGACACTCGCCGGTGTGCACGGAAATCATGATGAAGGG
CTACCGGTGCATGAAAAGTGTGCACGGAAATCATGATGAAGGGCTACCGG
TGCATGAAAAAGTCCCATGGCGACAGGAGCCAATGCCAAGACCTGTTCGA
TGCGCTCACGCAGTGCCGCTACCCGGATCCTATCGCCAACCAACGCGACC
CGTCGATCTGACAATGAAGGATGCGGCCGTTTACTGCACTCGGTTGTGTC
GCCGCGTGACCCATCGAACGAACCATAATAATAAAATAAAAAGGTGTATG
CCACGTCTTTGTTCTAGAAAAGCGTGTGCATTTTTTTTTCTTCCGCAGGT
GTATTTTCGGGGGCTTCGATTCGCGAGTGTTTTGTATTATGCTGAAAGTA
TGTAAAGTCCCATGGCGACAGGAGCCAATGCCAAGACCTGTTCGATGCGC
TCACGCAGTGCCGCTACCCGGATCCTATCGCCAACCAACGCGACCCGTCG
ATCTGACAATGAAGGATGCGGCCGTTTACTGCACTCGGTTGTGTCGCCGC
GTGACCCATCGAACGAACCATAATAATAAAATAAAAAGGTGTATGCCACG
TCTTTGTTCTAGAAAAGCGTGTGCATTTTTTTTTCTTCCGCAGGTGTATT
TTCGGGGGCTTCGATTCGCGAGTGTTTTGTATTATGCTGAAAGTATGTAA
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