mRNA_D-dudresnayi_contig10046.80.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10046.80.1
Unique NamemRNA_D-dudresnayi_contig10046.80.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig10046.80.1 vs. uniprot
Match: A0A7S3H487_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H487_9STRA)

HSP 1 Score: 145 bits (367), Expect = 3.790e-43
Identity = 69/95 (72.63%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:   43 YTGKTKFQRLIDNKIDLHSYKISTVLVDPPRSGLDQNTCILLSKFDKIIYISCNPETLARDVAILSATHRVQRVAAFDQFPYTHHLEGGVFLVKK 327
            YT    FQRL +N IDL SYKI+TVLVDPPR+GLD +TC ++S+F KI+YISCNPETLARDV  L  TH V RVAAFDQFPYTHHLEGGVFLV++
Sbjct:    1 YTNHKPFQRLKENNIDLQSYKITTVLVDPPRAGLDADTCKMISQFAKIVYISCNPETLARDVTKLKETHDVVRVAAFDQFPYTHHLEGGVFLVRR 95
[Close]
BLAST of mRNA_D-dudresnayi_contig10046.80.1 vs. uniprot
Match: UPI000B361667 (tRNA (uridine(54)-C5)-methyltransferase TrmA n=1 Tax=Thaumasiovibrio subtropicus TaxID=1891207 RepID=UPI000B361667)

HSP 1 Score: 147 bits (371), Expect = 7.580e-41
Identity = 63/109 (57.80%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:    1 IKVARLSSEEFTDAYTGKTKFQRLIDNKIDLHSYKISTVLVDPPRSGLDQNTCILLSKFDKIIYISCNPETLARDVAILSATHRVQRVAAFDQFPYTHHLEGGVFLVKK 327
            +++ R+S+E+FTDA  GK +F+RL DN IDL SY  +T+ VDPPR+G+D+ TC ++  +++I+YISCNPETL  ++AILS THR+ R A FDQFPYTHH+E GVFL +K
Sbjct:  260 VQIVRMSAEDFTDAMAGKREFRRLKDNNIDLQSYNCNTIFVDPPRAGMDEGTCRMVQGYERIMYISCNPETLKENLAILSETHRITRFALFDQFPYTHHMEAGVFLERK 368
[Close]
BLAST of mRNA_D-dudresnayi_contig10046.80.1 vs. uniprot
Match: A0A0F6A3Z9_9GAMM (tRNA/tmRNA (uracil-C(5))-methyltransferase n=8 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A0F6A3Z9_9GAMM)

HSP 1 Score: 146 bits (368), Expect = 1.990e-40
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 1 
Query:    1 IKVARLSSEEFTDAYTGKTKFQRLIDNKIDLHSYKISTVLVDPPRSGLDQNTCILLSKFDKIIYISCNPETLARDVAILSATHRVQRVAAFDQFPYTHHLEGGVFLVKK 327
            + + R+SSEEFTDA  GK  F RL  N IDL SY   T+LVDPPR+G+D+ TC L+S +D IIYISCNP+TL RD+ ILS TH + R+A FDQFPYTHH+E GVFL +K
Sbjct:  259 LDIIRMSSEEFTDAMQGKRNFSRL--NGIDLQSYNCQTILVDPPRAGMDELTCRLVSNYDNIIYISCNPDTLERDLEILSETHNISRIAIFDQFPYTHHVESGVFLTRK 365
[Close]
BLAST of mRNA_D-dudresnayi_contig10046.80.1 vs. uniprot
Match: A0A1X3CUZ2_9NEIS (tRNA/tmRNA (uracil-C(5))-methyltransferase n=3 Tax=Neisseria TaxID=482 RepID=A0A1X3CUZ2_9NEIS)

HSP 1 Score: 145 bits (365), Expect = 5.310e-40
Identity = 65/109 (59.63%), Postives = 88/109 (80.73%), Query Frame = 1 
Query:    1 IKVARLSSEEFTDAYTGKTKFQRLIDNKIDLHSYKISTVLVDPPRSGLDQNTCILLSKFDKIIYISCNPETLARDVAILSATHRVQRVAAFDQFPYTHHLEGGVFLVKK 327
            +K+ARLS+EEFT+AYTG  +F+RL +  I L  Y+ ST+ VDPPR+G+DQ T  L+ +F+ IIYISCNPETL +++ +LSATH V+R+A FDQFP+THH+E GV+L KK
Sbjct:  255 VKIARLSAEEFTEAYTGAREFRRLKEQGISLDDYRFSTIFVDPPRAGIDQETLKLVQQFENIIYISCNPETLHQNLEVLSATHHVRRMALFDQFPFTHHIESGVWLEKK 363
[Close]
BLAST of mRNA_D-dudresnayi_contig10046.80.1 vs. uniprot
Match: UPI000B3574FC (tRNA (uridine(54)-C5)-methyltransferase TrmA n=1 Tax=Thaumasiovibrio occultus TaxID=1891184 RepID=UPI000B3574FC)

HSP 1 Score: 144 bits (363), Expect = 1.170e-39
Identity = 62/109 (56.88%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:    1 IKVARLSSEEFTDAYTGKTKFQRLIDNKIDLHSYKISTVLVDPPRSGLDQNTCILLSKFDKIIYISCNPETLARDVAILSATHRVQRVAAFDQFPYTHHLEGGVFLVKK 327
            +++ R+S+E+FT+A  GK +F+RL DN IDL SY  +T+ VDPPRSG+D++TC ++  +++I+YISCNPETL  ++ ILS THR+ R A FDQFPYTHH+E GVFL +K
Sbjct:  260 VQIIRMSAEDFTEAMEGKREFRRLKDNNIDLQSYNCNTIFVDPPRSGMDEDTCRMVQGYERIMYISCNPETLKENLNILSETHRITRFALFDQFPYTHHMEAGVFLERK 368
[Close]
BLAST of mRNA_D-dudresnayi_contig10046.80.1 vs. uniprot
Match: A0A166UG28_9GAMM (tRNA/tmRNA (uracil-C(5))-methyltransferase n=9 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A166UG28_9GAMM)

HSP 1 Score: 144 bits (362), Expect = 1.540e-39
Identity = 67/109 (61.47%), Postives = 83/109 (76.15%), Query Frame = 1 
Query:    1 IKVARLSSEEFTDAYTGKTKFQRLIDNKIDLHSYKISTVLVDPPRSGLDQNTCILLSKFDKIIYISCNPETLARDVAILSATHRVQRVAAFDQFPYTHHLEGGVFLVKK 327
            + + R+SSEEFTDA  GK +F RL  N IDL SY   T+LVDPPR+G+D+ TC L+S +D IIYISCNP+TL RD+  LS TH + R+A FDQFPYTHH+E GVFL +K
Sbjct:  259 LDIIRMSSEEFTDAMQGKRQFSRL--NGIDLKSYNCQTILVDPPRAGMDELTCQLVSNYDNIIYISCNPDTLERDLETLSKTHNIARIAIFDQFPYTHHVESGVFLTRK 365
[Close]
BLAST of mRNA_D-dudresnayi_contig10046.80.1 vs. uniprot
Match: A0A2T3I5X4_9GAMM (tRNA/tmRNA (uracil-C(5))-methyltransferase n=11 Tax=Photobacterium damselae TaxID=38293 RepID=A0A2T3I5X4_9GAMM)

HSP 1 Score: 144 bits (362), Expect = 1.640e-39
Identity = 62/109 (56.88%), Postives = 86/109 (78.90%), Query Frame = 1 
Query:    1 IKVARLSSEEFTDAYTGKTKFQRLIDNKIDLHSYKISTVLVDPPRSGLDQNTCILLSKFDKIIYISCNPETLARDVAILSATHRVQRVAAFDQFPYTHHLEGGVFLVKK 327
            +++ R+S+EEFT+A  G+ +F+RL DN IDL SY  +T+ VDPPRSG+D+ TC ++  +++I+YISCNPETL  ++ ILS THR+ R A FDQFPYTHH+E GVFL +K
Sbjct:  260 VQIIRMSAEEFTEAMEGRREFRRLKDNNIDLQSYNCNTIFVDPPRSGMDEGTCRMVQGYERIMYISCNPETLKENLDILSETHRITRFALFDQFPYTHHMEAGVFLERK 368
[Close]
BLAST of mRNA_D-dudresnayi_contig10046.80.1 vs. uniprot
Match: TRMA_NEIMB (tRNA/tmRNA (uracil-C(5))-methyltransferase n=141 Tax=Neisseriaceae TaxID=481 RepID=TRMA_NEIMB)

HSP 1 Score: 142 bits (359), Expect = 4.040e-39
Identity = 67/109 (61.47%), Postives = 84/109 (77.06%), Query Frame = 1 
Query:    1 IKVARLSSEEFTDAYTGKTKFQRLIDNKIDLHSYKISTVLVDPPRSGLDQNTCILLSKFDKIIYISCNPETLARDVAILSATHRVQRVAAFDQFPYTHHLEGGVFLVKK 327
            IK+ARLS+EEFT+AYTGK +F+RL D  I L  Y  ST+ VDPPR+G+D+ T  L+S+FD IIYISCNPETL  ++  L+ TH V+R A FDQFP+THH+E GV L KK
Sbjct:  252 IKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPPRAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGVLLKKK 360
[Close]
BLAST of mRNA_D-dudresnayi_contig10046.80.1 vs. uniprot
Match: A0A090QZZ7_9GAMM (tRNA (Uracil54-C5-)-methyltransferase n=1 Tax=Photobacterium aphoticum TaxID=754436 RepID=A0A090QZZ7_9GAMM)

HSP 1 Score: 139 bits (351), Expect = 4.300e-39
Identity = 59/109 (54.13%), Postives = 84/109 (77.06%), Query Frame = 1 
Query:    1 IKVARLSSEEFTDAYTGKTKFQRLIDNKIDLHSYKISTVLVDPPRSGLDQNTCILLSKFDKIIYISCNPETLARDVAILSATHRVQRVAAFDQFPYTHHLEGGVFLVKK 327
            +++ R+S+E+FTDA  G+ +F+RL D  +DL SY  +T+ VDPPRSG+D+ TC ++  +D+I+YISCNP+TL  ++ ILS THR+ R A FDQFPYTHH+E GV L +K
Sbjct:  139 VQIIRMSAEDFTDAMEGRREFRRLKDQNVDLQSYNCNTIFVDPPRSGMDEGTCRMVQGYDRIMYISCNPDTLKENLDILSETHRITRFALFDQFPYTHHMEAGVLLERK 247
[Close]
BLAST of mRNA_D-dudresnayi_contig10046.80.1 vs. uniprot
Match: UPI001EF2E4B2 (tRNA (uridine(54)-C5)-methyltransferase TrmA n=1 Tax=Vibrio sp. Of7-15 TaxID=2724879 RepID=UPI001EF2E4B2)

HSP 1 Score: 142 bits (358), Expect = 6.420e-39
Identity = 61/109 (55.96%), Postives = 85/109 (77.98%), Query Frame = 1 
Query:    1 IKVARLSSEEFTDAYTGKTKFQRLIDNKIDLHSYKISTVLVDPPRSGLDQNTCILLSKFDKIIYISCNPETLARDVAILSATHRVQRVAAFDQFPYTHHLEGGVFLVKK 327
            +++ R+S+E+FTDA  GK +F+RL D  IDL SY  +T+ VDPPRSG+D+ TC ++  +++I+YISCNP+TL  ++ ILS THR+ R A FDQFPYTHH+E GVFL +K
Sbjct:  260 VQIIRMSAEDFTDAMEGKREFRRLKDQNIDLQSYNCNTIFVDPPRSGMDEGTCRMVQGYERIMYISCNPDTLKENLEILSETHRITRFALFDQFPYTHHMEAGVFLERK 368
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10046.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3H487_9STRA3.790e-4372.63Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
UPI000B3616677.580e-4157.80tRNA (uridine(54)-C5)-methyltransferase TrmA n=1 T... [more]
A0A0F6A3Z9_9GAMM1.990e-4062.39tRNA/tmRNA (uracil-C(5))-methyltransferase n=8 Tax... [more]
A0A1X3CUZ2_9NEIS5.310e-4059.63tRNA/tmRNA (uracil-C(5))-methyltransferase n=3 Tax... [more]
UPI000B3574FC1.170e-3956.88tRNA (uridine(54)-C5)-methyltransferase TrmA n=1 T... [more]
A0A166UG28_9GAMM1.540e-3961.47tRNA/tmRNA (uracil-C(5))-methyltransferase n=9 Tax... [more]
A0A2T3I5X4_9GAMM1.640e-3956.88tRNA/tmRNA (uracil-C(5))-methyltransferase n=11 Ta... [more]
TRMA_NEIMB4.040e-3961.47tRNA/tmRNA (uracil-C(5))-methyltransferase n=141 T... [more]
A0A090QZZ7_9GAMM4.300e-3954.13tRNA (Uracil54-C5-)-methyltransferase n=1 Tax=Phot... [more]
UPI001EF2E4B26.420e-3955.96tRNA (uridine(54)-C5)-methyltransferase TrmA n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10046contigD-dudresnayi_contig10046:3..329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score145.2
Seed ortholog evalue1.8e-32
Seed eggNOG ortholog675817.VDA_003109
Preferred nametrmA
KEGG koko:K00557,ko:K03215
GOsGO:0000049,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016740,GO:0016741,GO:0019843,GO:0030488,GO:0030696,GO:0030697,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363
EggNOG free text desc.Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA)
EggNOG OGs1MY45@1224,1RN2B@1236,1XSB1@135623,COG2265@1,COG2265@2
EC2.1.1.190,2.1.1.35
COG Functional cat.J
Best tax levelVibrionales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03016
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927505.2381568-CDS-D-dudresnayi_contig10046:2..3291622927505.2381568-CDS-D-dudresnayi_contig10046:2..329Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10046 3..329 +
1690556782.145819-CDS-D-dudresnayi_contig10046:2..3291690556782.145819-CDS-D-dudresnayi_contig10046:2..329Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10046 3..329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10046.80.1prot_D-dudresnayi_contig10046.80.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10046 3..329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10046.80.1

>prot_D-dudresnayi_contig10046.80.1 ID=prot_D-dudresnayi_contig10046.80.1|Name=mRNA_D-dudresnayi_contig10046.80.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=109bp
IKVARLSSEEFTDAYTGKTKFQRLIDNKIDLHSYKISTVLVDPPRSGLDQ
NTCILLSKFDKIIYISCNPETLARDVAILSATHRVQRVAAFDQFPYTHHL
EGGVFLVKK
back to top

mRNA from alignment at D-dudresnayi_contig10046:3..329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10046.80.1 ID=mRNA_D-dudresnayi_contig10046.80.1|Name=mRNA_D-dudresnayi_contig10046.80.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at D-dudresnayi_contig10046:3..329+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATTAAAGTAGCTCGTCTATCTTCTGAAGAATTTACTGATGCTTATACTGG
GAAAACAAAATTTCAACGTTTAATTGATAATAAAATTGATTTACATAGTT
ATAAAATATCAACAGTATTAGTTGACCCTCCCCGTTCTGGATTAGATCAA
AATACTTGTATTTTATTAAGTAAATTTGATAAAATTATATATATTTCATG
TAATCCTGAGACCCTAGCAAGGGATGTAGCTATATTGAGTGCTACCCATA
GGGTCCAGAGAGTGGCTGCATTTGACCAGTTTCCCTACACTCATCATTTG
GAGGGAGGTGTTTTCTTGGTGAAGAAG
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10046:3..329+

>mRNA_D-dudresnayi_contig10046.80.1 ID=mRNA_D-dudresnayi_contig10046.80.1|Name=mRNA_D-dudresnayi_contig10046.80.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at D-dudresnayi_contig10046:3..329+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATTAAAGTAGCTCGTCTATCTTCTGAAGAATTTACTGATGCTTATACTGG
GAAAACAAAATTTCAACGTTTAATTGATAATAAAATTGATTTACATAGTT
ATAAAATATCAACAGTATTAGTTGACCCTCCCCGTTCTGGATTAGATCAA
AATACTTGTATTTTATTAAGTAAATTTGATAAAATTATATATATTTCATG
TAATCCTGAGACCCTAGCAAGGGATGTAGCTATATTGAGTGCTACCCATA
GGGTCCAGAGAGTGGCTGCATTTGACCAGTTTCCCTACACTCATCATTTG
GAGGGAGGTGTTTTCTTGGTGAAGAAGATTAAAGTAGCTCGTCTATCTTC
TGAAGAATTTACTGATGCTTATACTGGGAAAACAAAATTTCAACGTTTAA
TTGATAATAAAATTGATTTACATAGTTATAAAATATCAACAGTATTAGTT
GACCCTCCCCGTTCTGGATTAGATCAAAATACTTGTATTTTATTAAGTAA
ATTTGATAAAATTATATATATTTCATGTAATCCTGAGACCCTAGCAAGGG
ATGTAGCTATATTGAGTGCTACCCATAGGGTCCAGAGAGTGGCTGCATTT
GACCAGTTTCCCTACACTCATCATTTGGAGGGAGGTGTTTTCTTGGTGAA
GAAG
back to top