mRNA_D-dudresnayi_contig10044.77.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10044.77.1
Unique NamemRNA_D-dudresnayi_contig10044.77.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10044.77.1 vs. uniprot
Match: A0A0G4IFT4_9ALVE (Arrestin_C domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4IFT4_9ALVE)

HSP 1 Score: 62.8 bits (151), Expect = 7.230e-9
Identity = 41/116 (35.34%), Postives = 62/116 (53.45%), Query Frame = 1 
Query:    1 MGVQASVASIYVTFDQPDVMAGCKVTGKAYLSVNQSEISCVSIGCKIIGQEKTTVKYTVTVGSGDNRRTETRTAHDGRTFMNMNFCLKSIAEGRILQGQYEYPFEFIMPSNSPASM 348
            MG   SV ++ V   Q    AG  V G  Y   +Q E +   I     G+E T +++T + G+G +RRT TR+A D   F+ +   + S   GR+L GQYE+PF+  +P   P+S+
Sbjct:    1 MGGSGSV-NVGVRLHQQTYTAGDTVRGTVYCQCSQ-ETAASQISLTFQGKESTYLEWTESRGTGKDRRTVTRSAEDYHLFLQLVCPVFSPPGGRLLPGQYEFPFQITLPPYLPSSL 114
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BLAST of mRNA_D-dudresnayi_contig10044.77.1 vs. uniprot
Match: A0A067BP37_SAPPC (Arrestin_N domain-containing protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BP37_SAPPC)

HSP 1 Score: 58.9 bits (141), Expect = 8.410e-8
Identity = 39/107 (36.45%), Postives = 56/107 (52.34%), Query Frame = 1 
Query:   25 SIYVTFDQPDVMAGCKVTGKAYLSVNQSEISCVSIGCKIIGQEKTTVKYTVTVGSGDNRRTETRTAHDGRTFMNMNFCLKSIAEGRILQGQYEYPFEFIMPSNSPAS 345
            SI +  D+P  ++G  V+G   + V +  I C  +   I G+EK     T  VGSGD+RR+ TRT      F+N    L S A+  I  GQY YPF++ +P   P +
Sbjct:   16 SIAIIVDKPHYISGEVVSGSLQVDVLEP-IECNEVVVVISGKEKVHWSETHDVGSGDDRRSVTRTFSSSHRFLNQAIVLYS-AQHHISPGQYIYPFQYQLPIGLPGT 120
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BLAST of mRNA_D-dudresnayi_contig10044.77.1 vs. uniprot
Match: A0A067CGM8_SAPPC (Arrestin_C domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CGM8_SAPPC)

HSP 1 Score: 58.9 bits (141), Expect = 1.330e-7
Identity = 39/107 (36.45%), Postives = 56/107 (52.34%), Query Frame = 1 
Query:   25 SIYVTFDQPDVMAGCKVTGKAYLSVNQSEISCVSIGCKIIGQEKTTVKYTVTVGSGDNRRTETRTAHDGRTFMNMNFCLKSIAEGRILQGQYEYPFEFIMPSNSPAS 345
            SI +  D+P  ++G  V+G   + V +  I C  +   I G+EK     T  VGSGD+RR+ TRT      F+N    L S A+  I  GQY YPF++ +P   P +
Sbjct:   16 SIAIIVDKPHYISGEVVSGSLQVDVLEP-IECNEVVVVISGKEKVHWSETHDVGSGDDRRSVTRTFSSSHRFLNQAIVLYS-AQHHISPGQYIYPFQYQLPIGLPGT 120
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10044.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0G4IFT4_9ALVE7.230e-935.34Arrestin_C domain-containing protein n=1 Tax=Chrom... [more]
A0A067BP37_SAPPC8.410e-836.45Arrestin_N domain-containing protein (Fragment) n=... [more]
A0A067CGM8_SAPPC1.330e-736.45Arrestin_C domain-containing protein n=2 Tax=Sapro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10044contigD-dudresnayi_contig10044:21..416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue3.7e-08
Seed eggNOG ortholog44056.XP_009040856.1
GOsGO:0001932,GO:0002029,GO:0002031,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006810,GO:0006897,GO:0006898,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0008277,GO:0009267,GO:0009605,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010646,GO:0010648,GO:0016020,GO:0016192,GO:0019220,GO:0019222,GO:0022401,GO:0023051,GO:0023057,GO:0023058,GO:0030587,GO:0031152,GO:0031323,GO:0031399,GO:0031623,GO:0031667,GO:0031668,GO:0031669,GO:0032268,GO:0032502,GO:0033554,GO:0042325,GO:0042594,GO:0043112,GO:0043170,GO:0043405,GO:0043408,GO:0043549,GO:0043949,GO:0044237,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0045744,GO:0045859,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051338,GO:0051703,GO:0051704,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0071496,GO:0071704,GO:0071900,GO:0071944,GO:0080090,GO:0090702,GO:0098630,GO:0098657,GO:0098743,GO:0099120,GO:1902531
EggNOG free text desc.ubiquitin-dependent endocytosis
EggNOG OGsKOG3780@1,KOG3780@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927505.0460768-CDS-D-dudresnayi_contig10044:20..4161622927505.0460768-CDS-D-dudresnayi_contig10044:20..416Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10044 21..416 -
1690556782.0012324-CDS-D-dudresnayi_contig10044:20..4161690556782.0012324-CDS-D-dudresnayi_contig10044:20..416Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10044 21..416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10044.77.1prot_D-dudresnayi_contig10044.77.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10044 21..416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10044.77.1

>prot_D-dudresnayi_contig10044.77.1 ID=prot_D-dudresnayi_contig10044.77.1|Name=mRNA_D-dudresnayi_contig10044.77.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=132bp
MGVQASVASIYVTFDQPDVMAGCKVTGKAYLSVNQSEISCVSIGCKIIGQ
EKTTVKYTVTVGSGDNRRTETRTAHDGRTFMNMNFCLKSIAEGRILQGQY
EYPFEFIMPSNSPASMFAGGAGEHCSVRYTME
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mRNA from alignment at D-dudresnayi_contig10044:21..416-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10044.77.1 ID=mRNA_D-dudresnayi_contig10044.77.1|Name=mRNA_D-dudresnayi_contig10044.77.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=396bp|location=Sequence derived from alignment at D-dudresnayi_contig10044:21..416- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGGAGTCCAAGCAAGCGTAGCATCAATCTATGTAACTTTTGATCAACC
AGATGTTATGGCAGGTTGTAAGGTTACTGGGAAAGCTTATCTGTCTGTAA
ATCAATCCGAAATAAGCTGCGTTTCCATTGGATGCAAAATTATTGGACAA
GAAAAAACAACAGTAAAATATACAGTCACGGTTGGATCAGGTGATAATCG
CCGCACGGAAACTCGAACTGCACATGATGGTAGGACCTTTATGAATATGA
ATTTCTGTTTAAAGTCCATTGCAGAAGGACGAATTCTTCAAGGACAATAT
GAATATCCATTTGAGTTTATTATGCCTTCAAATTCTCCTGCTAGTATGTT
TGCAGGTGGAGCAGGTGAACATTGTAGTGTAAGATATACAATGGAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10044:21..416-

>mRNA_D-dudresnayi_contig10044.77.1 ID=mRNA_D-dudresnayi_contig10044.77.1|Name=mRNA_D-dudresnayi_contig10044.77.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at D-dudresnayi_contig10044:21..416- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGGAGTCCAAGCAAGCGTAGCATCAATCTATGTAACTTTTGATCAACC
AGATGTTATGGCAGGTTGTAAGGTTACTGGGAAAGCTTATCTGTCTGTAA
ATCAATCCGAAATAAGCTGCGTTTCCATTGGATGCAAAATTATTGGACAA
GAAAAAACAACAGTAAAATATACAGTCACGGTTGGATCAGGTGATAATCG
CCGCACGGAAACTCGAACTGCACATGATGGTAGGACCTTTATGAATATGA
ATTTCTGTTTAAAGTCCATTGCAGAAGGACGAATTCTTCAAGGACAATAT
GAATATCCATTTGAGTTTATTATGCCTTCAAATTCTCCTGCTAGTATGTT
TGCAGGTGGAGCAGGTGAACATTGTAGTGTAAGATATACAATGGAAATGG
GAGTCCAAGCAAGCGTAGCATCAATCTATGTAACTTTTGATCAACCAGAT
GTTATGGCAGGTTGTAAGGTTACTGGGAAAGCTTATCTGTCTGTAAATCA
ATCCGAAATAAGCTGCGTTTCCATTGGATGCAAAATTATTGGACAAGAAA
AAACAACAGTAAAATATACAGTCACGGTTGGATCAGGTGATAATCGCCGC
ACGGAAACTCGAACTGCACATGATGGTAGGACCTTTATGAATATGAATTT
CTGTTTAAAGTCCATTGCAGAAGGACGAATTCTTCAAGGACAATATGAAT
ATCCATTTGAGTTTATTATGCCTTCAAATTCTCCTGCTAGTATGTTTGCA
GGTGGAGCAGGTGAACATTGTAGTGTAAGATATACAATGGAA
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