mRNA_D-dudresnayi_contig10041.75.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10041.75.1
Unique NamemRNA_D-dudresnayi_contig10041.75.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10041.75.1 vs. uniprot
Match: A0A6H5JXI4_9PHAE (FA_desaturase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXI4_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.530e-32
Identity = 61/98 (62.24%), Postives = 76/98 (77.55%), Query Frame = 3 
Query:  207 MPPRSDNAIGASDAGLSPSSSPRLEALKEKLNMNDLRQRIPQECFKKSLPRSVFYMLRDMGCVLALQYVYPDYVAGNWLATFAWWNANGFMLWCLFVV 500
            MPPRSD AIGA+D   S  + P  +    ++++  LR+++P+ECF KSLPRS+FYM RDMGCVLALQY+YP YVAG+W  TF WWNANGFMLW LFV+
Sbjct:    1 MPPRSDTAIGANDDSTSSITRPNKDV---RVDLMALRKQVPEECFIKSLPRSLFYMARDMGCVLALQYLYPIYVAGSWPLTFLWWNANGFMLWALFVI 95
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BLAST of mRNA_D-dudresnayi_contig10041.75.1 vs. uniprot
Match: A0A835YPJ0_9STRA (Fatty acid desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPJ0_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.210e-21
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 3 
Query:  282 ALKEKLNMNDLRQRIPQECFKKSLPRSVFYMLRDMGCVLALQYVYPDYVAGNWLATFAWWNANGFMLWCLFVV 500
            A+K+KL M+ L++ IP ECF KSL +S+FYM+RDMG + AL   YP YV GNW  TF WWNA GFM+W LFVV
Sbjct:   24 AVKDKLRMDVLKRIIPDECFHKSLVKSLFYMVRDMGLICALWKAYPVYVEGNWPLTFVWWNAMGFMMWALFVV 96
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BLAST of mRNA_D-dudresnayi_contig10041.75.1 vs. uniprot
Match: A0A6V1NJB0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NJB0_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 7.370e-13
Identity = 37/78 (47.44%), Postives = 46/78 (58.97%), Query Frame = 3 
Query:  267 SPRLEALKEKLNMNDLRQRIPQECFKKSLPRSVFYMLRDMGCVLALQYVYPDYVAGNWLATFAWWNANGFMLWCLFVV 500
            +P+L +LKE      LR  IP  CF KSLPRS+FYM RD+  +    Y Y  + A  W   F +WN  GF +WCLFVV
Sbjct:   21 APQLPSLKE------LRAAIPSHCFVKSLPRSLFYMFRDLVAICLCVYFYDTFKALGWSGLFIYWNLTGFSMWCLFVV 92
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BLAST of mRNA_D-dudresnayi_contig10041.75.1 vs. uniprot
Match: A0A0V0Q827_PSEPJ (FA_desaturase domain-containing protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0Q827_PSEPJ)

HSP 1 Score: 65.1 bits (157), Expect = 2.710e-9
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 3 
Query:  303 MNDLRQRIPQECFKKSLPRSVFYMLRDMGCVLALQYVYPDYVAGNWLATFAWWNANGFMLWCLFVV 500
            ++ +R+RIP+ECF+K+L +S+ YMLRD   V     + P +     L  F WWN  GF  WCLFVV
Sbjct:   44 IDQVRKRIPKECFEKNLTKSMMYMLRDWFFVFLCYQLQPYFFNFGILGKFIWWNITGFFGWCLFVV 109
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BLAST of mRNA_D-dudresnayi_contig10041.75.1 vs. uniprot
Match: A0A482S5W1_9ARCH (FA_desaturase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5W1_9ARCH)

HSP 1 Score: 58.5 bits (140), Expect = 5.090e-7
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 3 
Query:  297 LNMNDLRQRIPQECFKKSLPRSVFYMLRDM----GCVLALQYVY--------PDYVAGNWLATFAWWNANGFMLWCLFVV 500
            +N+N++R  IPQE F+KSLP+S+FY+  D     G +LA+  +         P ++ G  LA+  +WN  GF +WC+FVV
Sbjct:   33 INLNEMRNYIPQEAFQKSLPKSLFYLGFDYTMWGGALLAIHTLVNSTLWPTLPFWLQG--LASILYWNVAGFFMWCIFVV 110
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BLAST of mRNA_D-dudresnayi_contig10041.75.1 vs. uniprot
Match: I0YRN9_COCSC (Omega-3 fatty acid desaturase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YRN9_COCSC)

HSP 1 Score: 52.0 bits (123), Expect = 9.460e-5
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 3 
Query:  303 MNDLRQRIPQECFKKSLPRSVFYMLRDMGCVLALQYVYPDYVAGNWLATFAWWNANGFMLWCLFVV 500
            ++D+R  IP+ C+KK+  +S+ Y+ RD+  V  L      Y A +WL    +W A G M W LFVV
Sbjct:   77 LSDIRNAIPEHCWKKNAWKSMGYLARDVAVVFGL--AAGAYFANSWLVWPLYWMAQGTMFWALFVV 140
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10041.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JXI4_9PHAE1.530e-3262.24FA_desaturase domain-containing protein n=2 Tax=Ec... [more]
A0A835YPJ0_9STRA3.210e-2161.64Fatty acid desaturase n=1 Tax=Tribonema minus TaxI... [more]
A0A6V1NJB0_HETAK7.370e-1347.44Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0V0Q827_PSEPJ2.710e-945.45FA_desaturase domain-containing protein n=1 Tax=Ps... [more]
A0A482S5W1_9ARCH5.090e-740.00FA_desaturase domain-containing protein n=1 Tax=ar... [more]
I0YRN9_COCSC9.460e-539.39Omega-3 fatty acid desaturase n=1 Tax=Coccomyxa su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10041contigD-dudresnayi_contig10041:1554..3085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue1.2e-22
Seed eggNOG ortholog2880.D7FSC6
Preferred nameFAD2
KEGG rclassRC00917
KEGG koko:K10256,ko:K10257,ko:K21704,ko:K21710,ko:K21736
KEGG ReactionR11043,R11044
KEGG Pathwayko01040,ko01212,map01040,map01212
GOsGO:0000003,GO:0002376,GO:0003674,GO:0003824,GO:0004497,GO:0004768,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006950,GO:0006952,GO:0006955,GO:0007275,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016215,GO:0016491,GO:0016705,GO:0016709,GO:0016717,GO:0016720,GO:0019752,GO:0030176,GO:0030497,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0032787,GO:0033559,GO:0040002,GO:0040012,GO:0040017,GO:0042175,GO:0042335,GO:0042389,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045485,GO:0046394,GO:0048518,GO:0048856,GO:0050183,GO:0050789,GO:0050896,GO:0055114,GO:0065007,GO:0071704,GO:0072330,GO:0098827,GO:1901576
EggNOG free text desc.oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
EggNOG OGs2QQNB@2759,COG3239@1
EC1.14.18.4,1.14.19.16,1.14.19.22,1.14.19.25,1.14.19.33,1.14.19.34,1.14.19.35,1.14.19.36,1.14.19.6
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFatty acid desaturase
Ec32 orthologEc-20_005010.1
Exons2
Model size502
Cds size294
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10041.75.1prot_D-dudresnayi_contig10041.75.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10041 1760..3085 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927504.9010775-UTR-D-dudresnayi_contig10041:1553..17591622927504.9010775-UTR-D-dudresnayi_contig10041:1553..1759Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10041 1554..1759 +
1690556781.8269408-UTR-D-dudresnayi_contig10041:1553..17591690556781.8269408-UTR-D-dudresnayi_contig10041:1553..1759Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10041 1554..1759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927504.9110122-CDS-D-dudresnayi_contig10041:1759..18871622927504.9110122-CDS-D-dudresnayi_contig10041:1759..1887Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10041 1760..1887 +
1690556781.839508-CDS-D-dudresnayi_contig10041:1759..18871690556781.839508-CDS-D-dudresnayi_contig10041:1759..1887Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10041 1760..1887 +
1622927504.9217167-CDS-D-dudresnayi_contig10041:2919..30851622927504.9217167-CDS-D-dudresnayi_contig10041:2919..3085Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10041 2920..3085 +
1690556781.849344-CDS-D-dudresnayi_contig10041:2919..30851690556781.849344-CDS-D-dudresnayi_contig10041:2919..3085Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10041 2920..3085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10041.75.1

>prot_D-dudresnayi_contig10041.75.1 ID=prot_D-dudresnayi_contig10041.75.1|Name=mRNA_D-dudresnayi_contig10041.75.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=98bp
MPPRSDNAIGASDAGLSPSSSPRLEALKEKLNMNDLRQRIPQECFKKSLP
RSVFYMLRDMGCVLALQYVYPDYVAGNWLATFAWWNANGFMLWCLFVV
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mRNA from alignment at D-dudresnayi_contig10041:1554..3085+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10041.75.1 ID=mRNA_D-dudresnayi_contig10041.75.1|Name=mRNA_D-dudresnayi_contig10041.75.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1532bp|location=Sequence derived from alignment at D-dudresnayi_contig10041:1554..3085+ (Desmarestia dudresnayi DdudBR16 monoicous)
CGTCGTGCACGCTCGAGGCCAGCCACACCGGAGAGAGCGACCCACCAGAG
CAGACCAAGATTTTCGACAGAAGCATAAAGGCCACTGCTGTCTGTCTTTG
ACCCTTTTCTGCTAGCGCTCTCTCCTGGTCTCGACAGCCCTCTTGGCGTC
GTAGCGAGAAATCGACCTCAAAAGGACAAATCGATACTGGTATTGATTAG
TCGATCATGCCACCAAGGTCAGACAACGCTATCGGGGCGAGCGATGCCGG
TCTATCGCCTTCCTCGAGCCCAAGACTTGAGGCACTCAAAGAGAAGCTCA
ACATGAACGACCTCCGGCAGCGCATCCCACAAGAGTGAGCCCTTGAACGT
AGTACCGACGCCGGTTCTGCCGAATACACCACACGGCACACTGTAAGGTC
TTTTGGGTAGCCATATTTGGTAGCCGCGCCACGAGCTCATCACATTTATT
CTCTGTCAAGAATGGCCAGTCTCGCCGTCGTAGCAAGTGCTTAGTGCTGG
TCTACCATTAGAATATTCGTTGCTCTATCGTGGCATTATGTCAGCTGCAA
TCGGCATGGCGGCCGGCGAGCTCGATAAGTCCATATCGGTCAGACATCGT
CACGTACCGAAACCGTCTATTTCTGGTTGTTTCCTCTCCGATACGCACGT
GTAAGCTTGTAAGCTACCAACAACAAACAGTATGATTTGATGGTATCATA
TGATATCGTTTGTTTGGTGCTTCTTTTACACGAGCAGCTCGACACCGCCT
TACGCATACGCAAGCGGAGAGTCGGATGCATCGCTAGCCTGCCTGCGTTG
CCTGCTTACTATTGCTCCGATGGTTCCTCGTGTCATATGTTGGCGCACCC
CTTCCGAGTGGAAGTGAACCGTAACACTACAATACAATGTGCTACTACTG
TACTGTTGTACTGCGTACTCGTATCGTTAGATAAGAACAACAACGTGCTT
CTGAGCGTGTGCCAGAATCCGCAGCATATCATTCAGAAGCAAGATAATGA
TGTGACTGTTATGATATTGATGGTTGCGCCATACATGTCAGATAGCAATT
CATATTATACGGAAGATCTACAGTAGTAGCAGTGAACTCTTGTAGAGCTG
TAAACCTTTCCGTCATACTTGTACGATAAGAGTACTATTAAATACCCACT
GACTCGTACTGATTACTATCATACTGCTGTCTGCTGTGTTGTGCGTTGTA
CTGTCCTGTGCTGTTGTGGTGCTATTATACAGTCTGTCTGCATTTCCTCG
TGGTTCTTCTCTTTGTAAACGTGCCGTGCCATACTCGTACGCCTCACTTT
TGTCCTGCTGTGTGGTATTATATTTAATATCGTTGTGGTATGACGTGGTA
CTGGGGTGTAAATCAGGTGCTTCAAGAAGAGCCTACCGCGGTCGGTATTT
TACATGTTACGCGACATGGGCTGCGTGCTGGCTCTGCAGTACGTGTACCC
CGACTACGTAGCGGGCAACTGGCTGGCGACTTTTGCCTGGTGGAACGCGA
ATGGTTTCATGCTGTGGTGTCTCTTCGTCGTA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10041:1554..3085+

>mRNA_D-dudresnayi_contig10041.75.1 ID=mRNA_D-dudresnayi_contig10041.75.1|Name=mRNA_D-dudresnayi_contig10041.75.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at D-dudresnayi_contig10041:1554..3085+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCCACCAAGGTCAGACAACGCTATCGGGGCGAGCGATGCCGGTCTATC
GCCTTCCTCGAGCCCAAGACTTGAGGCACTCAAAGAGAAGCTCAACATGA
ACGACCTCCGGCAGCGCATCCCACAAGAATGCCACCAAGGTCAGACAACG
CTATCGGGGCGAGCGATGCCGGTCTATCGCCTTCCTCGAGCCCAAGACTT
GAGGCACTCAAAGAGAAGCTCAACATGAACGACCTCCGGCAGCGCATCCC
ACAAGAGTGCTTCAAGAAGAGCCTACCGCGGTCGGTATTTTACATGTTAC
GCGACATGGGCTGCGTGCTGGCTCTGCAGTACGTGTACCCCGACTACGTA
GCGGGCAACTGGCTGGCGACTTTTGCCTGGTGGAACGCGAATGGTTTCAT
GCTGTGGTGTCTCTTCGTCGTAGTGCTTCAAGAAGAGCCTACCGCGGTCG
GTATTTTACATGTTACGCGACATGGGCTGCGTGCTGGCTCTGCAGTACGT
GTACCCCGACTACGTAGCGGGCAACTGGCTGGCGACTTTTGCCTGGTGGA
ACGCGAATGGTTTCATGCTGTGGTGTCTCTTCGTCGTA
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