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Homology
BLAST of mRNA_D-dudresnayi_contig10020.61.1 vs. uniprot
Match: D7FL92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL92_ECTSI) HSP 1 Score: 89.7 bits (221), Expect = 3.010e-19 Identity = 49/93 (52.69%), Postives = 62/93 (66.67%), Query Frame = 3
Query: 21 LPGVA-DGDVN-AG-----GGTHGLPERGIYVLLVGAV---------GLSEGQERSSCGRYRILCDVIKDVGSESPNRCTLWGLEVVNYWKSQ 251
+PG+ DG N AG GG GLP++G +VL+VGAV G + RSSC RYR+LCDV+KDVG ESPNR TLWGLEV+++W S+
Sbjct: 80 VPGIGLDGGTNDAGHGVRDGGADGLPKKGQHVLMVGAVEAPCDDNGQGRRVQRRRSSCRRYRVLCDVVKDVGPESPNRDTLWGLEVIDFWMSR 172
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 551 |
| Cds size | 276 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927503.5511804-UTR-D-dudresnayi_contig10020:1401..1437 | 1622927503.5511804-UTR-D-dudresnayi_contig10020:1401..1437 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig10020 1402..1437 + |
| 1690556780.8772964-UTR-D-dudresnayi_contig10020:1401..1437 | 1690556780.8772964-UTR-D-dudresnayi_contig10020:1401..1437 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig10020 1402..1437 + |
| 1622927503.6302729-UTR-D-dudresnayi_contig10020:3461..3700 | 1622927503.6302729-UTR-D-dudresnayi_contig10020:3461..3700 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig10020 3462..3700 + |
| 1690556780.9380693-UTR-D-dudresnayi_contig10020:3461..3700 | 1690556780.9380693-UTR-D-dudresnayi_contig10020:3461..3700 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig10020 3462..3700 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig10020.61.1 >prot_D-dudresnayi_contig10020.61.1 ID=prot_D-dudresnayi_contig10020.61.1|Name=mRNA_D-dudresnayi_contig10020.61.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=92bp
MVTSMPGAVLMGYLSEVYTCCWWERLGYRRDRSVVRADGIEYSVTSSRML
VLRARIAALSGGLRLSTIGKASVNRHQPLDREHRIFFLLRV* back to topmRNA from alignment at D-dudresnayi_contig10020:1402..3700+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig10020.61.1 ID=mRNA_D-dudresnayi_contig10020.61.1|Name=mRNA_D-dudresnayi_contig10020.61.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2299bp|location=Sequence derived from alignment at D-dudresnayi_contig10020:1402..3700+ (Desmarestia dudresnayi DdudBR16 monoicous)
CAATCGCGGCCGTCATTGCACTGCCGGGAGTAGCAGATGGTGACGTCAAT
GCCGGGGGCGGTACTCATGGGCTACCTGAGCGAGGTGCGTACAAACTGCT
GTTACCGTATTGTCCTGCTGCGGATGCTGCTGCTGCTGTTATTCGTCATG
CTTACGAATATTATTATTGGCTTGTCCTTCAATGTTATTGTTGGCTTGTT
CTTCAATGATGGTGAACTTGGTGTTTTCCTGATTGTTGTTGTACTTGTTC
GTTAGCAAGTTCAAGGAGCCCGCTCTCAGTTTTCCAGTTTCAATCTCAAC
CTAGAAGCACACCCTATTGGTAGGACACTGTCGCTGATACCAGACTACGA
GACGGAACCCTGTGGGCATGCGTTAATTTTGTTGGATGAGGCGCAGAGTA
TACACCGAACAGGTCGTGTGAGATCGCCTTGCCCTCGCGCTCCAGCCGGA
AGCCTGACTCTCACTCGTAGTAAGCCATGAAGTGCAATAGAGAATGCATG
TAAGATGTAAGGAGGCGGTTTTTCTAGGGGAGAGGGGCCTGATATTCGCG
ACTTCTTACAGTCTGATGACGAACACAGATACTTCGAAGTATATATATTC
CTCGCAATACCGGAGATTGCTTCAGATGCGGCGGTCGACCCAATTTGTTA
ATACTCATGCTTGACTTCTTGTATCCATAACGTGCGCGGTGAAAGCACAT
ATTGGCAAGGCGAGCATGTCCTACTTTCTTTGACGCCCGAGCAGGCTTAT
TCGGTCAAGGTCTATTTCACTACCCTATACCAGTAAACTGAACGTGGTCG
CTGTTGAAGCTTAAAAAGTAAAAGCTTAAAAACAAAAAACACTGAAAGCC
ATGGAAATTTGTGGAGATCAAGCTTTCTTTTAGCCTTGACCATCCGCCGA
TCTATTGTAAGGATAAAAAGCGAAGCATCTGTTGTTGTGTTGTTTTCTCA
TCTCCCGGCAGGTATATACGTGCTGTTGGTGGGAGCGGTTGGGTTATCGG
AGGGACAGGAGCGTAGTTCGTGCGGACGGTATCGAATACTCTGTGACGTC
ATCAAGGTGCGATTGTCCACCCCCTTAACGCCGTGCTGTGCAATAATCAT
GCCACGGCATGGATGGCTAGCCGATACATGGACCATTTTCCGCATAAGTA
ACGAGGCTTCAGCGATAGTCCCCCCCCCCCCCCCCCGAAACGCGGTCAAT
GGTCACATGACTAAGGCAAGCAACAAACGAGTACAGTACACCCCCCCCCC
CCACCCGAAAGCACTGTACAAGGTTTGATAAGTGTATATACGGTATGCAA
TTATGGGCCCAAGTGGAGGACACATGGTTGGAAGATGGTACGGTAGATGG
TACGGTAGTAACCTATCCCAATGTCGCTGCTGATTGGCGCGCGACTGGTG
TTCATGCCACTAAAATGTGGAGTGGGGGGGGCTTGCGCCTGACACCTATT
TCTGGGTTAGTGAGTAGCTGGTGAGGAGTATGCCGCAACGACCGCCCCGA
CCGCAAAATGCAATCATCGCTGGACTTTGACCAGAAGTGCTGCTGCGATT
CTATGATCAAAGGGTGATGTTGTGCTGCTGCGGTGTCGCGAGCGATCGGG
CGCGGTTTGGTTTGTCTGTTGGCCTCAATGACGCTTCCCTGCTTTCTTGA
ACGAGACGGGCCATGTCTCGGCCCACTTTCACTTTGCCTTGCTCGTTCGT
AGTTTGCAACCCAGGTGGAGAGACTGAGAAGGATATCCTGTGTGCACGCG
TGATCCATTGCAGCGCGGGGTAGTACATATCGATAGTGGCGTATAGAAAC
GATGTTCTAAACTGTAGTACAGTTGTGACGGATCTGTAGTGCCCCGTCCT
TGAGAACAGCTGCGTTGTTGTTTGCTCTCGTCTCGGTCGTTCGCTCTTTT
TTTTAATGTTCGTCGTGCACGTGGCAGGATGTTGGTTCTGAGAGCCCGAA
TCGCTGCACTCTCTGGGGGCTTGAGGTTGTCAACTATTGGAAAAGCCAGC
GTCAATAGGCACCAACCACTTGATCGGGAACACCGTATATTTTTCCTTTT
ACGAGTATGATATCATAGAGTATCACTACTACTGTCGTTGTTTTACTGTG
TTGTACGCCTTCACTTGGCTTCACGCAGGTTGTTGACACGTGTTGATGAA
ATATTTTGTTGCCAAGCATGCGTGCATTGACGCATTTCATGCCCGTCTTG
TTGTTCATGGCCTCGAGTATGTGTCTCCTGCCTGGCAATTACATCGTTAT
TTAGGGACGCGAGCTCAATTCGACTAAACGTGCTTTTTTAGTACGAAGT back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig10020:1402..3700+ >mRNA_D-dudresnayi_contig10020.61.1 ID=mRNA_D-dudresnayi_contig10020.61.1|Name=mRNA_D-dudresnayi_contig10020.61.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at D-dudresnayi_contig10020:1402..3700+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTGACGTCAATGCCGGGGGCGGTACTCATGGGCTACCTGAGCGAGAT
GGTGACGTCAATGCCGGGGGCGGTACTCATGGGCTACCTGAGCGAGGTAT
ATACGTGCTGTTGGTGGGAGCGGTTGGGTTATCGGAGGGACAGGAGCGTA
GTTCGTGCGGACGGTATCGAATACTCTGTGACGTCATCAAGGTATATACG
TGCTGTTGGTGGGAGCGGTTGGGTTATCGGAGGGACAGGAGCGTAGTTCG
TGCGGACGGTATCGAATACTCTGTGACGTCATCAAGGATGTTGGTTCTGA
GAGCCCGAATCGCTGCACTCTCTGGGGGCTTGAGGTTGTCAACTATTGGA
AAAGCCAGCGTCAATAGGCACCAACCACTTGATCGGGAACACCGTATATT
TTTCCTTTTACGAGTATGAGATGTTGGTTCTGAGAGCCCGAATCGCTGCA
CTCTCTGGGGGCTTGAGGTTGTCAACTATTGGAAAAGCCAGCGTCAATAG
GCACCAACCACTTGATCGGGAACACCGTATATTTTTCCTTTTACGAGTAT
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