mRNA_D-dudresnayi_contig10019.59.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10019.59.1
Unique NamemRNA_D-dudresnayi_contig10019.59.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10019.59.1 vs. uniprot
Match: A0A6H5L056_9PHAE (NUC194 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L056_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 6.290e-22
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:    1 LVAGTLGSDSPAVDPATKANALALIPFLRPCLTRKWKDYGHSTPCGSGEVDESSEGHRA----------LVLPALEEMVSRHFPIEDSREP 243
            LVAGTLGS S  VD +TKA+AL L+PFLRPCLTRK ++YGH+ P    + ++ + G  A          LV+PALEEM+S HFPI++SREP
Sbjct: 1672 LVAGTLGSSSSVVDASTKADALTLVPFLRPCLTRKARNYGHAVPHAGKQGEDGAGGAGASAGGKGKPDGLVMPALEEMMSMHFPIDNSREP 1762
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BLAST of mRNA_D-dudresnayi_contig10019.59.1 vs. uniprot
Match: D8LKP7_ECTSI (Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP7_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 9.160e-20
Identity = 49/92 (53.26%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:    1 LVAGTLGSDSPAVDPATKANALALIPFLRPCLTRKWKDYGHSTPC------GSGEVDESSEGHRA----LVLPALEEMVSRHFPIEDSREPA 246
            LVA TLGS S  VD +TKA+AL L+PFLRPC+TRK ++YGH+ P       G       S G +     LV+PA+EEM+S HFPI++SREPA
Sbjct: 2011 LVARTLGSSSSVVDASTKADALTLVPFLRPCITRKARNYGHAVPHAGRQGEGGXXXXXXSAGGKGKSDGLVMPAMEEMMSMHFPIDNSREPA 2102
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10019.59.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L056_9PHAE6.290e-2254.95NUC194 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LKP7_ECTSI9.160e-2053.26Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10019contigD-dudresnayi_contig10019:4211..5493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue4.6e-17
Seed eggNOG ortholog2880.D8LKP7
KEGG koko:K06642,ko:K07203,ko:K08873
KEGG Pathwayko01521,ko01522,ko03015,ko03450,ko04012,ko04066,ko04072,ko04110,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map03015,map03450,map04012,map04066,map04072,map04110,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00297
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0891@2759
EC2.7.11.1
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03032,ko03400,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927503.3922002-CDS-D-dudresnayi_contig10019:4210..43521622927503.3922002-CDS-D-dudresnayi_contig10019:4210..4352Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10019 4211..4352 +
1690556780.779932-CDS-D-dudresnayi_contig10019:4210..43521690556780.779932-CDS-D-dudresnayi_contig10019:4210..4352Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10019 4211..4352 +
1622927503.4084492-CDS-D-dudresnayi_contig10019:5389..54931622927503.4084492-CDS-D-dudresnayi_contig10019:5389..5493Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10019 5390..5493 +
1690556780.7896519-CDS-D-dudresnayi_contig10019:5389..54931690556780.7896519-CDS-D-dudresnayi_contig10019:5389..5493Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10019 5390..5493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10019.59.1prot_D-dudresnayi_contig10019.59.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10019 4211..5493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10019.59.1

>prot_D-dudresnayi_contig10019.59.1 ID=prot_D-dudresnayi_contig10019.59.1|Name=mRNA_D-dudresnayi_contig10019.59.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=82bp
LVAGTLGSDSPAVDPATKANALALIPFLRPCLTRKWKDYGHSTPCGSGEV
DESSEGHRALVLPALEEMVSRHFPIEDSREPA
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mRNA from alignment at D-dudresnayi_contig10019:4211..5493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10019.59.1 ID=mRNA_D-dudresnayi_contig10019.59.1|Name=mRNA_D-dudresnayi_contig10019.59.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1283bp|location=Sequence derived from alignment at D-dudresnayi_contig10019:4211..5493+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTGGTGGCAGGGACGCTGGGCTCCGACTCTCCGGCCGTAGACCCTGCAAC
CAAGGCGAACGCTCTGGCGCTCATCCCGTTTTTGCGCCCCTGTCTCACAA
GAAAATGGAAGGATTACGGTCACTCAACGCCATGCGGAAGCGGTGAGGAT
AGTCTTGGGAATAGGAGTAAGGGTGGACAGGGTAGGTTGACAGATTGTGC
AAATCTCGGGCGGTCCTACGTTTGCCTAGTTGGTCGCACCGTCGTGCGAC
ACAATTCGGCAAGAGTTCGGAGACTAGTGGAACAGGACACAAGGCTTGTT
ATTTTCATCTGTAGACGACTGGTACGCCGAACCTGACGTTATTTTTGTCT
CAGAGCATAGGGGAAAGAGCCATGCTGCGATAGGGAGGGGGGTCCTTTTT
TTAGCCCTCAATTTTCTGACTGACGGGGCTCCTCAACTGGGAAACTACCG
AATATCTTTGAAACGTTATTTCGTATATGTAATTTTGTATTCATGCTATA
CCGAGCTCATGGCATTGTTTATCGGGTCGCATGCACAATTTTTTGTCAAG
TTTGGTCTTTCGATGAGATAAACTGCTCCTAATGTTAGGAGCCTCGGAAA
GTTTAGGTGCCCTCCTATCGTAGCATGTCTCGAAATTTACATCGATCACC
GGGAAGGTTGGGATATTTTAGGGCGCAGTCAGCCACCTTCGCTTGTCCGA
GTTTATTGCTTTGTTTGATTTTTATCCATCACTTTAACACCCCAGCCCAG
CTCACAGGGGCTCGTCTAGGCATTGCGCAGCGCGCCTGCCTGAGCAAGCC
GTGGTCACAGTTAGGTGTCTTCCACTCCCCGGTACATGCCTTCGTTGGTA
TCGCGTACGGCGTTTGTTCGGCATTCCCATAGCTCGTCGACTATTCGTCG
ACTGTTGCTTACTCACGCTCTCGCGCTTTTCCGCAACAGAAGACGACACA
GAAAGTGTGTGTGTGTGTGTGTTTTGTTTTACAGGAATCCGAACCCCGAG
CTTCTGACAACAACGGCGGTTCATAGCCCTTGAGCCTACTTGTTAAAGTG
TTGTACAGAATAGTGCACAACAACTAACGAGTGTTGTAGAGATTGCGGAA
CCGATGATGTGTGCTTGGCATGCAAGCTTTTTCTGAGAATATTCTCAGCC
ATCGCGGATGTCTTCACGCGTGTGTGCAGGTGAAGTGGACGAAAGCTCAG
AAGGGCACCGTGCTCTCGTGTTGCCCGCCCTGGAGGAGATGGTTTCGAGG
CATTTTCCGATCGAGGACAGCCGAGAGCCTGCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10019:4211..5493+

>mRNA_D-dudresnayi_contig10019.59.1 ID=mRNA_D-dudresnayi_contig10019.59.1|Name=mRNA_D-dudresnayi_contig10019.59.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at D-dudresnayi_contig10019:4211..5493+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTGGTGGCAGGGACGCTGGGCTCCGACTCTCCGGCCGTAGACCCTGCAAC
CAAGGCGAACGCTCTGGCGCTCATCCCGTTTTTGCGCCCCTGTCTCACAA
GAAAATGGAAGGATTACGGTCACTCAACGCCATGCGGAAGCGCTGGTGGC
AGGGACGCTGGGCTCCGACTCTCCGGCCGTAGACCCTGCAACCAAGGCGA
ACGCTCTGGCGCTCATCCCGTTTTTGCGCCCCTGTCTCACAAGAAAATGG
AAGGATTACGGTCACTCAACGCCATGCGGAAGCGGTGAAGTGGACGAAAG
CTCAGAAGGGCACCGTGCTCTCGTGTTGCCCGCCCTGGAGGAGATGGTTT
CGAGGCATTTTCCGATCGAGGACAGCCGAGAGCCTGCGGTGAAGTGGACG
AAAGCTCAGAAGGGCACCGTGCTCTCGTGTTGCCCGCCCTGGAGGAGATG
GTTTCGAGGCATTTTCCGATCGAGGACAGCCGAGAGCCTGCG
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