mRNA_D-dudresnayi_contig10005.43.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10005.43.1
Unique NamemRNA_D-dudresnayi_contig10005.43.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10005.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10005contigD-dudresnayi_contig10005:5835..6352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size520
Cds size510
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927501.5726833-UTR-D-dudresnayi_contig10005:5834..58421622927501.5726833-UTR-D-dudresnayi_contig10005:5834..5842Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10005 5835..5842 +
1690556779.2218869-UTR-D-dudresnayi_contig10005:5834..58421690556779.2218869-UTR-D-dudresnayi_contig10005:5834..5842Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10005 5835..5842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927501.5844889-CDS-D-dudresnayi_contig10005:5842..63521622927501.5844889-CDS-D-dudresnayi_contig10005:5842..6352Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10005 5843..6352 +
1690556779.2343628-CDS-D-dudresnayi_contig10005:5842..63521690556779.2343628-CDS-D-dudresnayi_contig10005:5842..6352Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10005 5843..6352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10005.43.1prot_D-dudresnayi_contig10005.43.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10005 5843..6352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10005.43.1

>prot_D-dudresnayi_contig10005.43.1 ID=prot_D-dudresnayi_contig10005.43.1|Name=mRNA_D-dudresnayi_contig10005.43.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=170bp
MGSEPAATTKKKWWCSVHKTSLHDSSDCRVQRNNCGDQDGKTRNGQHQYG
QQYQGHQRNSTTAHANSATVPDSSTTFIANNDITVTTPSAATTTTDFVSA
TTASPPSGIGFSFLAAPSKADSPAPVLFTMTADTGASSHFIHSDILPGIE
QHMYDYVQLDPPIAINVAGH
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mRNA from alignment at D-dudresnayi_contig10005:5835..6352+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10005.43.1 ID=mRNA_D-dudresnayi_contig10005.43.1|Name=mRNA_D-dudresnayi_contig10005.43.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=518bp|location=Sequence derived from alignment at D-dudresnayi_contig10005:5835..6352+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGGATAACATGGGTAGTGAACCCGCCGCAACTACAAAGAAGAAATGGTGG
TGCAGCGTGCACAAAACATCACTGCACGACAGTTCTGATTGCCGTGTACA
GCGTAATAATTGCGGTGACCAAGACGGAAAAACCCGTAACGGCCAACACC
AGTATGGGCAACAGTACCAAGGGCATCAGCGTAACTCTACGACTGCACAC
GCCAACTCGGCAACTGTACCGGATTCGTCCACAACATTTATTGCCAACAA
CGATATTACTGTTACGACCCCATCAGCTGCAACGACAACGACCGACTTCG
TCTCCGCAACTACAGCTTCGCCTCCTTCCGGCATAGGTTTCTCCTTCCTA
GCAGCTCCTTCCAAGGCTGACAGCCCTGCACCCGTACTTTTTACGATGAC
TGCGGATACCGGTGCGTCTAGTCACTTCATCCATAGTGATATCCTTCCTG
GCATCGAGCAGCATATGTACGACTACGTTCAACTCGATCCTCCGATAGCC
ATCAACGTCGCTGGGCAT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10005:5835..6352+

>mRNA_D-dudresnayi_contig10005.43.1 ID=mRNA_D-dudresnayi_contig10005.43.1|Name=mRNA_D-dudresnayi_contig10005.43.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at D-dudresnayi_contig10005:5835..6352+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGGTAGTGAACCCGCCGCAACTACAAAGAAGAAATGGTGGTGCAGCGT
GCACAAAACATCACTGCACGACAGTTCTGATTGCCGTGTACAGCGTAATA
ATTGCGGTGACCAAGACGGAAAAACCCGTAACGGCCAACACCAGTATGGG
CAACAGTACCAAGGGCATCAGCGTAACTCTACGACTGCACACGCCAACTC
GGCAACTGTACCGGATTCGTCCACAACATTTATTGCCAACAACGATATTA
CTGTTACGACCCCATCAGCTGCAACGACAACGACCGACTTCGTCTCCGCA
ACTACAGCTTCGCCTCCTTCCGGCATAGGTTTCTCCTTCCTAGCAGCTCC
TTCCAAGGCTGACAGCCCTGCACCCGTACTTTTTACGATGACTGCGGATA
CCGGTGCGTCTAGTCACTTCATCCATAGTGATATCCTTCCTGGCATCGAG
CAGCATATGTACGACTACGTTCAACTCGATCCTCCGATAGCCATCAACGT
CGCTGGGCATATGGGTAGTGAACCCGCCGCAACTACAAAGAAGAAATGGT
GGTGCAGCGTGCACAAAACATCACTGCACGACAGTTCTGATTGCCGTGTA
CAGCGTAATAATTGCGGTGACCAAGACGGAAAAACCCGTAACGGCCAACA
CCAGTATGGGCAACAGTACCAAGGGCATCAGCGTAACTCTACGACTGCAC
ACGCCAACTCGGCAACTGTACCGGATTCGTCCACAACATTTATTGCCAAC
AACGATATTACTGTTACGACCCCATCAGCTGCAACGACAACGACCGACTT
CGTCTCCGCAACTACAGCTTCGCCTCCTTCCGGCATAGGTTTCTCCTTCC
TAGCAGCTCCTTCCAAGGCTGACAGCCCTGCACCCGTACTTTTTACGATG
ACTGCGGATACCGGTGCGTCTAGTCACTTCATCCATAGTGATATCCTTCC
TGGCATCGAGCAGCATATGTACGACTACGTTCAACTCGATCCTCCGATAG
CCATCAACGTCGCTGGGCAT
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