mRNA_D-dudresnayi_contig100.35.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig100.35.1
Unique NamemRNA_D-dudresnayi_contig100.35.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig100.35.1 vs. uniprot
Match: D7G1F2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1F2_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 6.390e-39
Identity = 99/197 (50.25%), Postives = 125/197 (63.45%), Query Frame = 2
Query:  134 MASTLGVLDVLSRLREESEKAATALAAQEETNRGLLQKCTEAERESGRTDALTEALQAQKKELEEGWRLAETRKKEAEARLLRLQNQKARCDETAAQKRQSARASADGIVESSKRFRADASARVRQIGELRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTELTERCKSVAAALAKANEADRENTAMLAKA 724
            MASTLGVLDVLS+LREESE+A+TAL AQ+ETNR LLQKC EAE ESGRTD   EALQ +K +LE+G   AET ++EAE RL RLQ Q+AR  + AA+ R++  A+    V  SKRFRADA  RVRQIGELRA                                   E+T + ++VA + +K ++ DREN ++LA+A
Sbjct:    1 MASTLGVLDVLSKLREESERASTALTAQQETNRTLLQKCIEAETESGRTDEAKEALQLRKVQLEQGHEDAETGRREAEGRLRRLQMQQARRKQAAARMRENTTAAGASAVAISKRFRADAFDRVRQIGELRARLRDKRGELESAEEDKRELDVEISNKKATRDTVKAEVTSQLEAVALSCSKVDDIDRENKSLLARA 197          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig100.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1F2_ECTSI6.390e-3950.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig100contigD-dudresnayi_contig100:53030..58540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons8
Model size726
Cds size591
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927500.914052-UTR-D-dudresnayi_contig100:53029..531311622927500.914052-UTR-D-dudresnayi_contig100:53029..53131Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig100 53030..53131 +
1690556778.351691-UTR-D-dudresnayi_contig100:53029..531311690556778.351691-UTR-D-dudresnayi_contig100:53029..53131Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig100 53030..53131 +
1622927500.9259923-UTR-D-dudresnayi_contig100:53860..538911622927500.9259923-UTR-D-dudresnayi_contig100:53860..53891Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig100 53861..53891 +
1690556778.3919764-UTR-D-dudresnayi_contig100:53860..538911690556778.3919764-UTR-D-dudresnayi_contig100:53860..53891Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig100 53861..53891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927500.9385943-CDS-D-dudresnayi_contig100:53891..539781622927500.9385943-CDS-D-dudresnayi_contig100:53891..53978Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig100 53892..53978 +
1690556778.4008534-CDS-D-dudresnayi_contig100:53891..539781690556778.4008534-CDS-D-dudresnayi_contig100:53891..53978Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig100 53892..53978 +
1622927500.9484415-CDS-D-dudresnayi_contig100:54995..550881622927500.9484415-CDS-D-dudresnayi_contig100:54995..55088Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig100 54996..55088 +
1690556778.40876-CDS-D-dudresnayi_contig100:54995..550881690556778.40876-CDS-D-dudresnayi_contig100:54995..55088Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig100 54996..55088 +
1622927500.9625876-CDS-D-dudresnayi_contig100:55628..557171622927500.9625876-CDS-D-dudresnayi_contig100:55628..55717Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig100 55629..55717 +
1690556778.4179807-CDS-D-dudresnayi_contig100:55628..557171690556778.4179807-CDS-D-dudresnayi_contig100:55628..55717Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig100 55629..55717 +
1622927500.9732854-CDS-D-dudresnayi_contig100:56276..563491622927500.9732854-CDS-D-dudresnayi_contig100:56276..56349Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig100 56277..56349 +
1690556778.4257355-CDS-D-dudresnayi_contig100:56276..563491690556778.4257355-CDS-D-dudresnayi_contig100:56276..56349Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig100 56277..56349 +
1622927500.9853847-CDS-D-dudresnayi_contig100:57289..573751622927500.9853847-CDS-D-dudresnayi_contig100:57289..57375Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig100 57290..57375 +
1690556778.433647-CDS-D-dudresnayi_contig100:57289..573751690556778.433647-CDS-D-dudresnayi_contig100:57289..57375Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig100 57290..57375 +
1622927500.99691-CDS-D-dudresnayi_contig100:57836..579001622927500.99691-CDS-D-dudresnayi_contig100:57836..57900Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig100 57837..57900 +
1690556778.4496775-CDS-D-dudresnayi_contig100:57836..579001690556778.4496775-CDS-D-dudresnayi_contig100:57836..57900Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig100 57837..57900 +
1622927501.0082479-CDS-D-dudresnayi_contig100:58441..585401622927501.0082479-CDS-D-dudresnayi_contig100:58441..58540Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig100 58442..58540 +
1690556778.4595559-CDS-D-dudresnayi_contig100:58441..585401690556778.4595559-CDS-D-dudresnayi_contig100:58441..58540Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig100 58442..58540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig100.35.1prot_D-dudresnayi_contig100.35.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig100 53892..58540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig100.35.1

>prot_D-dudresnayi_contig100.35.1 ID=prot_D-dudresnayi_contig100.35.1|Name=mRNA_D-dudresnayi_contig100.35.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=197bp
MASTLGVLDVLSRLREESEKAATALAAQEETNRGLLQKCTEAERESGRTD
ALTEALQAQKKELEEGWRLAETRKKEAEARLLRLQNQKARCDETAAQKRQ
SARASADGIVESSKRFRADASARVRQIGELRARLREKMRELERIRNQMHE
LNEELNAKKSAKDKVKTELTERCKSVAAALAKANEADRENTAMLAKA
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mRNA from alignment at D-dudresnayi_contig100:53030..58540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig100.35.1 ID=mRNA_D-dudresnayi_contig100.35.1|Name=mRNA_D-dudresnayi_contig100.35.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=5511bp|location=Sequence derived from alignment at D-dudresnayi_contig100:53030..58540+ (Desmarestia dudresnayi DdudBR16 monoicous)
CGTGGATGAAAACCCCGTCACCCGTGGCATTCTGAGCTAGAGGGACAGAA CTTCGCAGCGCACCTTCATTCTGCGTGGCGTCTTCTAAGAGGAGTCAGAA AGGCAAGTGACCCAGCGGCATTGCTTTTTTAGGGAAGTGTGCTTGGCTTT GGTCTGGTACCAAGCGCAGATTCAAACGTTCTGCAGAGCTCTGTAAGCTA AGCATTTCCATGCCACCAATGATTAATATTTGCTTTGCCGAATTTGCAGC CATAAGCTGTCCATGACCTCATCGCTGCAATCTTCCCGGTGAAGGTAACA ATTCATGTCACAAGCGTATCCTCCATGCTAGGATTTTGGTTGCAAGGTTG GTCGTCGCTGTATAGACTATCGAAGAAAATTACTTTTCTAGTTCGTTGAA CAATGAAAGCAGTCTTCTTCGCGCACCATATTAAATCGATTCAAAAGTGA CACCCACCCACCCATACCCTACGAGCGAGTACTGATACCAATAATATGCT ACAGATGTACAGATAGGTACCGTCATCAAAGGGCTCGTTAGAGGGCCCGT CGCGTGCTTTCATCTGACTTCATTATAGTTGACAGGTGTATGTACGTGTA GACCGCTTGCTGTGCCAATAACGAATTCAAGACCGATCGCAACTGGTCAC CATGGTGACACCATGGTGATTATGGTCCACCATGGTGGTCACCATGGTGT CCACCATTGTGTCACCATGGTGTGCGCCATGTAAAAGCCAGGTAACGTAG AACATTGTAGTAGATAAAGAGCTCTAAGGACAATAAGCAATATGCCCAAA TATCTGAAACCTCATGAATTTTGTGCGGCAGGATCTAACGATCTACTCCA GGAGGACGTACGATGGCATCTACGCTTGGTGTTCTGGACGTTCTTAGCCG TCTCCGAGAAGAGTCCGAAAAAGCTGCTACTGCGTTGGCTGCCCAGGAGG TGTCTGTTGTAAACTTTTGTGGTGTCTGTTGTGAACGTTTGTGGCGCCCT CGTAGCGCCATAGTGCCAAATTGGGTTGTTGGTTCACATTGCACCAGACC ACCAATACGCTCGCCCACCGTGGGTAATATCATGTCTCCTACCCATCACG GTATACACGGCAACAGAATCGTAGTGTGGTGAACGTGTGTCCGAACATGT GGAAAGTATCTGCGACCGGCGCGCATCGATTGTTCGGATCTACCAATTAA TCCCGCGTGGATAAATTAATTTATATATTTTGTACATCCATACGCTTCGC TACAGCTTCTATTCTACTGGCGCAAAAGTGCAGACGACAGGAGTTTGGGA AACGATCGATAATCCGATTTTCTGCTGCATAGATCGTAGCCTCCGACACG CACGCATAACGCGAATAGCGTCTTATTTCCTTGCTGGATTTGGATTTGAA CAGCTGCCCTGCTTTCGCATTGTTTCACTTTTGTCTTCTACGTGGAATTC CAGTAAACCTTAATTCATGAAACGTTCCTTGGAAATACACCAGTAACGTG AACTCATAGTTATACTGGGGCTCAGGGATTTGAACTATTGATAGTAATAC TTGAACAGAACCGCTGTTCAGCAGAAAATCCAAATAGATTCCAGGTAATT TCACCGAGATACGTGGAGTTGTATGACAAGTTTAGTGGAGACCGTCGGCG AAGGTTAATGACATTCCGTAATATTTCGTAAAACATGTATCGAAATTTGA AAGTTGGAGCTTCCATGGAAATCCCATTGAATCCGTGGAAATTCACGGCA CGGTTCATGGAATAGCACGGGCTTTTGGGGCTCACAGCGTTTGTTGTCGG GGACACCACTTTGTTCTGCAGCGTAGGGCGTTCCATCCAGTTGTATCTAC GAGTAGAGTTTTGTTTGTTTTTTCCTCGAAGACCACCGCAAGGCACACAA TAGACTCGACGAAACGCAGCATTCCAATGAACATGCTGCGTATGTATGTA AATCTACGGAACGCAGGAGACGAACCGGGGGTTGCTGCAAAAGTGCACTG AAGCGGAGAGAGAGAGTGGCCGCACTGATGCTCTAACGGAAGCACTCCAA GCACAAAAGGTAAAAGTCCACATTGTTTAGGTACAGTTTGTACATCGCCG TGCAGGGCTCGAGCTCCACATCCTTGACGGATGATGGCAGAGTGAGATAC CAGGCTCCGTAGCTAGCTGACTGGGGTGCGGGAGGGGGCGAGCGGTAGAA GTAAAGAGATCGAAGACACCCCCCTAACTCAGGGCAATAGGAATGGGCAA AAACTGCGATGTTGACAATTCGGAAACTGTCAGGTTCTCCCGCAGGTCAA CGGGAAATAAGTCCTTATATTCGGCCACGGGTCACGAGTTCCAAAGAGCC ACCGACGCTCCTTTGCTTGTTTGGGAGAAGTGCTCGGGATGGTCGGGCAC CCCCCTCGTTATTAGCCCGCGGACAACCACGCCGATTACAATCACACTCT TCCAAGCAATATCTACTACTTCCACGATATGCTAAGCTCGCCTTTTGTAT GTCCGAGAAATATAGTCGACGAGATATAGATGCTATACAAGAAGTTAAAT CACTAATATACCACCTCGTGCCTCTATAACGTGCACATTATACACGCAGA AGGAGCTCGAGGAGGGTTGGAGGTTGGCCGAGACAAGGAAAAAAGAGGCA GAGGCCAGGTTGCTCAGGCTTCAAAACCAAAAGGCGAGGTGCGAAAGCCG TCATCGTGTCCATCTGGTACACCCCTGAGTTGTTTCTCGAATATCTTGTA CGATCTTTTGAATCGGGTGTTTTTTTGTTTTTCTAACTCGGGGGGTGGGT AAAAGTATAGCTTAAAAGCTCCCAACTTTCTGCGCCTACATAGGCCGCGT CGTGATTGCCGATGTAGCCATGTTTCAGAAGACAACGTCGTCATTAATCA GGTAGTCGTAGCTGCGATGATGTGGAACGGGATGCCCAGCCGGCAGCTAT AATTATCTGTTTTCTGGTGTTTTTGATACTCCGGCAGCGCATCGGAAATA ACACGTAGTTTCCAGGTCGTTCGAGTCTCTGGGAAGCAGGGGAAGGGTTG CCCTCTTACCCGAACATGTCTATGTACAAAATCGTGTGAGTAACTTCAAG AAGTGTTTGCCATACGTTTGGCTAAAATCTTATTCCACAGAGAGCGACTG GTTGTTTGAGGCAAAGTATGATAGCTAGCATGATGAATGGCCTTGTGCGA TGTTTACCATTGCTATGACCGCTTGCGCGTTTTGTTTGTTCCAAAAGGTG TGACGAAACAGCTGCACAAAAGCGACAGTCAGCCAGGGCCAGCGCGGATG GCATCGTGGAGTCCTCAAAGGTTTGTATTGGCTACATTGCGCCCATGATC TGATAGCGGGGATGTTTTGCGGGGTCGCAGAATTTCGCCCAGCCAGTCCT ATATATTGTAGGCATAGCCTAACAACAAGGCACTATCAACGATCTATCAA TTGAATATGTTGGCAGATACAGTCTCTCTGGACTTGTCACAGAACTAATC ACGAAGTTTTGACAATTCAGATACAACGGGAATGGGTGGAAGTGGACTTC ATGCAGTGGGGCCGTTGCCTGACTACCGGATGCCCCACGGCCAGCATTTT CCGTCGACACACACACCGAACCTCCCCACGGTCGAACCTAGCACGGTAGG AACACGAACGTCGTAGTCCTGACAGAGGCGTGCTGCCGTAAGGAGGGGTA CTTTTGATCTACTAGATAGTCGACGTTTTCTCGGGGTGATCCCCATTTTC GAACGGGGTGGTTCATCTGTGTCTCGTGTCTCGCAATGACCACCACGTCA ACCCGATGTGTTGTGTCCGCTACTCGCGTTGTCGAGGTATATTAGAAATA ACCGTAAGATAACCAAGCAGAGACCTTGAATTCAACCGCTATCATGAAAC GTTTTGGGTACCGTACTTGTGCCATGAAGGGTGTACCCCAATCGTGGAGT GCATCGTCAAAAACTTCGAGTATCGCAGCGCAACGCCGAAAATTCGCGAC ACATGTTCGGGAGGGGGCGTTAGCAATATCAGAAACTCTCAGTTACAGCA TGAGACGCAAATATAGGTGCCACCAACGAATTATTGCTCGTCTACGAGGT TCCGATAGATGACACAACATCCAATACCGCGACCGTTTACCGCGCGGATG CATCGTAAATAGCGCTTGCGTGTTTTTCGTACATATGAATTTCGCTCCTT CACCCGTGGCGTGTATTTGCGCCCATCAATCTATGCGTCGCATTCGTTTG AACACCGCAGCGATTTCGAGCGGATGCCTCAGCAAGGGTCCGCCAAATAG GAGAGCTGAGGGCTCGCTTACGGGAGAAGATGAGAGAGCTTGAAAGGTAT CATGGCACAGCCCGTGACAGACAGCGCGACTGTCATAAATTACCAAAAAA GATGTCGTAGTCTCCGCATCATACTCGGTACGTGATGCCCAATTGCGATG TTGGTATTCTATAGCTCGGAAGGACTTTTAATGTAGTATTTGTATCATAT TCATCATACTATTAGCGTCGCAGGCGATTCGTTTGGTTATCTTCTTCGAC AGCGTGCTGCAGAATATAGTCCGGCTTCATCTTCGTTATTGCCAGGACAA GGCGGTAACAAATTGAATGCATTCCTTCGATATCGTTGGTATTATTACAT GAATATTTCTGGGAATTAATGCGCAAAGAAGCTGGGCCCACGCATGGCCA CGCCAGCGCGGGAGTTCCACGTCTGTAATATATCAAGAGGTGGATCTTCA CTGAACCATCAGAACAACCAAATGTATCTCGTTTTGGTCGTACGGTGGCA CCGGCAGGATTCGGAACCAGATGCACGAACTGAATGAAGAGCTCAACGCA AAGAAATCCGCCAAGGACAAGGTTAGACTTCATTGACACACCACGGCAGT GTACCCTTACCGTTTCGTTTGCGGCGAAGAAGACATGGGTACATTTGTCG GCATGATTTCGTGGTTGTGTTTTTACAAACTTGCTGTACACGTGGTAAAC GACGGTGGCCCACATCACTCTTTTTTCTATTAATGGGTGATCTACGCATT ATTTGTAGGAGTACTTTCGTCCCAAGAACAACGCGCTGAGTGAAATCGTC CATACAATGTAAGTTTTGCTAGACCTGATAATGCCTACCTGCTATAACCC ACAGAGACACGGGTGCTCACACCTAGACTTTCGAAATAAACCCAAGACGC TACAAGTAGTGTGTCTGCTACTTCGATGGTGTACCCGCGATTCGACAAAA GTGGAGCATCGGTCGCAAAATAAGGCCCCCGCCCCCCATTTGGTTTTCGA TTAGCTTTCGCTGCGAATACAAACTTCTCGCAGCCTACCAAACCATGGGA TGTGTTTTAACGTATGCATCACAGCTATGTATCATATGCATGTGTGTGTA TGATTCTTAAAGGTAAAAACCGAGCTTACGGAAAGATGCAAGAGTGTAGC CGCCGCCTTGGCAAAGGCAAATGAGGCCGACCGTGAGAACACCGCTATGT TGGCCAAGGCT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig100:53030..58540+

>mRNA_D-dudresnayi_contig100.35.1 ID=mRNA_D-dudresnayi_contig100.35.1|Name=mRNA_D-dudresnayi_contig100.35.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at D-dudresnayi_contig100:53030..58540+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCATCTACGCTTGGTGTTCTGGACGTTCTTAGCCGTCTCCGAGAAGA
GTCCGAAAAAGCTGCTACTGCGTTGGCTGCCCAGGAGATGGCATCTACGC
TTGGTGTTCTGGACGTTCTTAGCCGTCTCCGAGAAGAGTCCGAAAAAGCT
GCTACTGCGTTGGCTGCCCAGGAGGAGACGAACCGGGGGTTGCTGCAAAA
GTGCACTGAAGCGGAGAGAGAGAGTGGCCGCACTGATGCTCTAACGGAAG
CACTCCAAGCACAAAAGGAGACGAACCGGGGGTTGCTGCAAAAGTGCACT
GAAGCGGAGAGAGAGAGTGGCCGCACTGATGCTCTAACGGAAGCACTCCA
AGCACAAAAGAAGGAGCTCGAGGAGGGTTGGAGGTTGGCCGAGACAAGGA
AAAAAGAGGCAGAGGCCAGGTTGCTCAGGCTTCAAAACCAAAAGGCGAGA
AGGAGCTCGAGGAGGGTTGGAGGTTGGCCGAGACAAGGAAAAAAGAGGCA
GAGGCCAGGTTGCTCAGGCTTCAAAACCAAAAGGCGAGGTGTGACGAAAC
AGCTGCACAAAAGCGACAGTCAGCCAGGGCCAGCGCGGATGGCATCGTGG
AGTCCTCAAAGGTGTGACGAAACAGCTGCACAAAAGCGACAGTCAGCCAG
GGCCAGCGCGGATGGCATCGTGGAGTCCTCAAAGCGATTTCGAGCGGATG
CCTCAGCAAGGGTCCGCCAAATAGGAGAGCTGAGGGCTCGCTTACGGGAG
AAGATGAGAGAGCTTGAAAGCGATTTCGAGCGGATGCCTCAGCAAGGGTC
CGCCAAATAGGAGAGCTGAGGGCTCGCTTACGGGAGAAGATGAGAGAGCT
TGAAAGGATTCGGAACCAGATGCACGAACTGAATGAAGAGCTCAACGCAA
AGAAATCCGCCAAGGACAAGGATTCGGAACCAGATGCACGAACTGAATGA
AGAGCTCAACGCAAAGAAATCCGCCAAGGACAAGGTAAAAACCGAGCTTA
CGGAAAGATGCAAGAGTGTAGCCGCCGCCTTGGCAAAGGCAAATGAGGCC
GACCGTGAGAACACCGCTATGTTGGCCAAGGCTGTAAAAACCGAGCTTAC
GGAAAGATGCAAGAGTGTAGCCGCCGCCTTGGCAAAGGCAAATGAGGCCG
ACCGTGAGAACACCGCTATGTTGGCCAAGGCT
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