mRNA_D-dudresnayi_contig10.29.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10.29.1
Unique NamemRNA_D-dudresnayi_contig10.29.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10contigD-dudresnayi_contig10:77996..78552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size559
Cds size492
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927499.4174757-UTR-D-dudresnayi_contig10:77995..780601622927499.4174757-UTR-D-dudresnayi_contig10:77995..78060Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10 77996..78060 +
1690556777.4657056-UTR-D-dudresnayi_contig10:77995..780601690556777.4657056-UTR-D-dudresnayi_contig10:77995..78060Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10 77996..78060 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927499.4328856-CDS-D-dudresnayi_contig10:78060..785521622927499.4328856-CDS-D-dudresnayi_contig10:78060..78552Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 78061..78552 +
1690556777.4732697-CDS-D-dudresnayi_contig10:78060..785521690556777.4732697-CDS-D-dudresnayi_contig10:78060..78552Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 78061..78552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10.29.1prot_D-dudresnayi_contig10.29.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10 78061..78552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10.29.1

>prot_D-dudresnayi_contig10.29.1 ID=prot_D-dudresnayi_contig10.29.1|Name=mRNA_D-dudresnayi_contig10.29.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=164bp
MNMFGLPPTNPQLSCREQLPSAITIPKLEISNHASSTIGSDCGETDKDLT
STSTTPMSNYMRRSTPTSRGDPSHLQKNILTACDINNDITQYLSNLHLSE
HNKYIAQKDDLLSSSISDAEPHYNKISPAPLVRSQSCRSIDTQPDNRREV
DLSLFSLDPSTFDQ
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mRNA from alignment at D-dudresnayi_contig10:77996..78552+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10.29.1 ID=mRNA_D-dudresnayi_contig10.29.1|Name=mRNA_D-dudresnayi_contig10.29.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=557bp|location=Sequence derived from alignment at D-dudresnayi_contig10:77996..78552+ (Desmarestia dudresnayi DdudBR16 monoicous)
TTGACCATCTGTGTTGTTTAACAAAGTTATAATTATTTGAAGACTTTGAA
ATTATTATTTGATTCATGAATATGTTTGGCTTACCACCAACCAACCCTCA
ACTGTCCTGCCGCGAGCAACTGCCGTCTGCCATCACCATCCCGAAGCTGG
AAATTTCGAACCATGCATCTTCCACAATCGGGTCAGATTGTGGAGAGACT
GATAAAGACCTTACATCTACATCAACTACTCCTATGAGTAATTACATGCG
CCGATCTACTCCGACTAGTAGAGGTGATCCTTCCCACCTCCAGAAGAATA
TTTTAACTGCCTGTGATATCAACAACGATATCACTCAGTATTTAAGCAAT
CTTCATCTTTCTGAGCACAATAAATACATTGCTCAGAAGGATGATTTACT
CAGCAGTAGTATTAGTGATGCAGAGCCTCACTATAACAAGATTTCCCCAG
CGCCGCTGGTGCGCAGCCAGAGCTGCAGATCCATCGACACACAGCCAGAC
AACCGCCGCGAGGTGGACCTGTCCCTTTTTAGCCTGGATCCCAGTACATT
TGACCAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10:77996..78552+

>mRNA_D-dudresnayi_contig10.29.1 ID=mRNA_D-dudresnayi_contig10.29.1|Name=mRNA_D-dudresnayi_contig10.29.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at D-dudresnayi_contig10:77996..78552+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAATATGTTTGGCTTACCACCAACCAACCCTCAACTGTCCTGCCGCGA
GCAACTGCCGTCTGCCATCACCATCCCGAAGCTGGAAATTTCGAACCATG
CATCTTCCACAATCGGGTCAGATTGTGGAGAGACTGATAAAGACCTTACA
TCTACATCAACTACTCCTATGAGTAATTACATGCGCCGATCTACTCCGAC
TAGTAGAGGTGATCCTTCCCACCTCCAGAAGAATATTTTAACTGCCTGTG
ATATCAACAACGATATCACTCAGTATTTAAGCAATCTTCATCTTTCTGAG
CACAATAAATACATTGCTCAGAAGGATGATTTACTCAGCAGTAGTATTAG
TGATGCAGAGCCTCACTATAACAAGATTTCCCCAGCGCCGCTGGTGCGCA
GCCAGAGCTGCAGATCCATCGACACACAGCCAGACAACCGCCGCGAGGTG
GACCTGTCCCTTTTTAGCCTGGATCCCAGTACATTTGACCAGATGAATAT
GTTTGGCTTACCACCAACCAACCCTCAACTGTCCTGCCGCGAGCAACTGC
CGTCTGCCATCACCATCCCGAAGCTGGAAATTTCGAACCATGCATCTTCC
ACAATCGGGTCAGATTGTGGAGAGACTGATAAAGACCTTACATCTACATC
AACTACTCCTATGAGTAATTACATGCGCCGATCTACTCCGACTAGTAGAG
GTGATCCTTCCCACCTCCAGAAGAATATTTTAACTGCCTGTGATATCAAC
AACGATATCACTCAGTATTTAAGCAATCTTCATCTTTCTGAGCACAATAA
ATACATTGCTCAGAAGGATGATTTACTCAGCAGTAGTATTAGTGATGCAG
AGCCTCACTATAACAAGATTTCCCCAGCGCCGCTGGTGCGCAGCCAGAGC
TGCAGATCCATCGACACACAGCCAGACAACCGCCGCGAGGTGGACCTGTC
CCTTTTTAGCCTGGATCCCAGTACATTTGACCAG
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