mRNA_D-dudresnayi_contig10.19.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10.19.1
Unique NamemRNA_D-dudresnayi_contig10.19.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10.19.1 vs. uniprot
Match: A0A7S3MGY1_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGY1_9STRA)

HSP 1 Score: 171 bits (434), Expect = 2.710e-48
Identity = 94/139 (67.63%), Postives = 118/139 (84.89%), Query Frame = 1 
Query:    1 MDAEALKASGMLNMLMSAEGRDKLQALAGKVQDSKKRLETEVSEWDLERKKAYFEGFKDHPLLDILGQSGSDPAAKMMALTSMSGEQIDELMTLLVVIAQQDSGELIASLREQVAKENEAAAPGTSSALNQVIKTLGSL 417
            MDA+AL++SGML ML S +GR KLQ LA ++Q+SK RLE EVSEWDLERKK YFEGFK+HPLL +LG+S +DP AKM+ALTSM+  +ID+L+TLLVVI+Q+D G+L+ASLREQVAKE+ +   G S+ LNQVIKT+GSL
Sbjct:  332 MDADALRSSGMLQMLTSPDGRAKLQGLAQQIQESKARLEPEVSEWDLERKKLYFEGFKEHPLLAVLGKS-TDPGAKMLALTSMTTSEIDDLITLLVVISQEDGGDLLASLREQVAKESNS--NGNSAVLNQVIKTMGSL 467
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3MGY1_9STRA2.710e-4867.63Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10contigD-dudresnayi_contig10:7660..8269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size419
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10.19.1prot_D-dudresnayi_contig10.19.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10 7660..8269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927499.2811947-CDS-D-dudresnayi_contig10:7659..77491622927499.2811947-CDS-D-dudresnayi_contig10:7659..7749Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 7660..7749 +
1690556777.3517845-CDS-D-dudresnayi_contig10:7659..77491690556777.3517845-CDS-D-dudresnayi_contig10:7659..7749Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 7660..7749 +
1622927499.2929275-CDS-D-dudresnayi_contig10:7848..81511622927499.2929275-CDS-D-dudresnayi_contig10:7848..8151Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 7849..8151 +
1690556777.3790646-CDS-D-dudresnayi_contig10:7848..81511690556777.3790646-CDS-D-dudresnayi_contig10:7848..8151Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 7849..8151 +
1622927499.3079827-CDS-D-dudresnayi_contig10:8245..82691622927499.3079827-CDS-D-dudresnayi_contig10:8245..8269Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 8246..8269 +
1690556777.4077303-CDS-D-dudresnayi_contig10:8245..82691690556777.4077303-CDS-D-dudresnayi_contig10:8245..8269Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 8246..8269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10.19.1

>prot_D-dudresnayi_contig10.19.1 ID=prot_D-dudresnayi_contig10.19.1|Name=mRNA_D-dudresnayi_contig10.19.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=139bp
MDAEALKASGMLNMLMSAEGRDKLQALAGKVQDSKKRLETEVSEWDLERK
KAYFEGFKDHPLLDILGQSGSDPAAKMMALTSMSGEQIDELMTLLVVIAQ
QDSGELIASLREQVAKENEAAAPGTSSALNQVIKTLGSL
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mRNA from alignment at D-dudresnayi_contig10:7660..8269+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10.19.1 ID=mRNA_D-dudresnayi_contig10.19.1|Name=mRNA_D-dudresnayi_contig10.19.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=610bp|location=Sequence derived from alignment at D-dudresnayi_contig10:7660..8269+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGACGCGGAGGCGCTCAAGGCGAGCGGCATGCTCAATATGCTCATGTC
AGCGGAGGGCAGGGACAAGCTACAGGCGCTGGCTGGCAAGGTGCGTCATG
CCATCTTGCTGCGGTGTTGTTTATACTACTGTTTGTGCTGATTATTGTCG
ATTACCCTGCTCTGCGTGCCGCTTCTGTGGCATGTGCAGGTGCAAGATAG
CAAGAAGCGCCTGGAGACCGAGGTGTCGGAGTGGGACCTGGAGAGGAAGA
AGGCCTACTTCGAGGGCTTCAAGGACCACCCCCTGCTGGACATTCTGGGC
CAGAGCGGCTCCGACCCCGCGGCCAAGATGATGGCGCTGACCAGCATGAG
CGGGGAGCAGATCGACGAGCTTATGACGCTGCTGGTGGTGATCGCACAGC
AGGACAGCGGTGAACTCATCGCCAGTCTGCGCGAGCAGGTCGCCAAGGAG
AACGAGGCCGCGGCTCCAGGCACGTCCAGCGCGCTCAACCAGGTACTCCT
TTGGTCTCATCTGTGCTTCTACTACTATCTGTTTGACTGACAGTGTACTG
TTGTTACGCTGTTGTTGCTGCTGCTGCTGTCTGCAGGTGATCAAGACCCT
GGGCTCCCTG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10:7660..8269+

>mRNA_D-dudresnayi_contig10.19.1 ID=mRNA_D-dudresnayi_contig10.19.1|Name=mRNA_D-dudresnayi_contig10.19.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at D-dudresnayi_contig10:7660..8269+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGACGCGGAGGCGCTCAAGGCGAGCGGCATGCTCAATATGCTCATGTC
AGCGGAGGGCAGGGACAAGCTACAGGCGCTGGCTGGCAAGATGGACGCGG
AGGCGCTCAAGGCGAGCGGCATGCTCAATATGCTCATGTCAGCGGAGGGC
AGGGACAAGCTACAGGCGCTGGCTGGCAAGGTGCAAGATAGCAAGAAGCG
CCTGGAGACCGAGGTGTCGGAGTGGGACCTGGAGAGGAAGAAGGCCTACT
TCGAGGGCTTCAAGGACCACCCCCTGCTGGACATTCTGGGCCAGAGCGGC
TCCGACCCCGCGGCCAAGATGATGGCGCTGACCAGCATGAGCGGGGAGCA
GATCGACGAGCTTATGACGCTGCTGGTGGTGATCGCACAGCAGGACAGCG
GTGAACTCATCGCCAGTCTGCGCGAGCAGGTCGCCAAGGAGAACGAGGCC
GCGGCTCCAGGCACGTCCAGCGCGCTCAACCAGGTGCAAGATAGCAAGAA
GCGCCTGGAGACCGAGGTGTCGGAGTGGGACCTGGAGAGGAAGAAGGCCT
ACTTCGAGGGCTTCAAGGACCACCCCCTGCTGGACATTCTGGGCCAGAGC
GGCTCCGACCCCGCGGCCAAGATGATGGCGCTGACCAGCATGAGCGGGGA
GCAGATCGACGAGCTTATGACGCTGCTGGTGGTGATCGCACAGCAGGACA
GCGGTGAACTCATCGCCAGTCTGCGCGAGCAGGTCGCCAAGGAGAACGAG
GCCGCGGCTCCAGGCACGTCCAGCGCGCTCAACCAGGTGATCAAGACCCT
GGGCTCCCTGGTGATCAAGACCCTGGGCTCCCTG
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