mRNA_D-dudresnayi_contig10.18.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10.18.1
Unique NamemRNA_D-dudresnayi_contig10.18.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10.18.1 vs. uniprot
Match: A0A7S3MGY1_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGY1_9STRA)

HSP 1 Score: 245 bits (625), Expect = 9.710e-75
Identity = 122/215 (56.74%), Postives = 158/215 (73.49%), Query Frame = 1 
Query:  100 MFLGNLSTANEHEARKKKSGKKKSKDDVVEPTESEFPH-LRRNKPGDLPILYAADKEGGAIPREVLLNFLNTMCEMMLDEGNINQNINEGKQKNMGLQDVAVHFQRDVMEYNFQIERNFGCRYLASVPEHYPGDTEVIETTQKFMFHAIRSYLNSLHQRSRRYKNGSLQPPNPHQKMSKLTIMEFLEGCNVLMTMPETRKELRALAASTKQMPGP 741
            MFLG LSTANEHEARK            +   ++     + R KPG  PILY+A    G +PR+V+L FL    EMMLDE N+N  IN+  +KN+GL + AVHFQRDVMEYN+QIER FGCRYLA +P+++P DTE++E T+ FMF A+RSY+N+LH RSRRYK+G+LQPP+P+  MS+ +I+EFLEGCN LM MPET++ELR +A +T +MPGP
Sbjct:    1 MFLGGLSTANEHEARKXXXXXXXXXXXXLTADDTTISSVMTRGKPGVKPILYSATLTSGGMPRDVILAFLRGCVEMMLDEKNLNDMINDSVRKNIGLHEGAVHFQRDVMEYNYQIEREFGCRYLALIPQNHPDDTELLEATKAFMFSALRSYVNNLHLRSRRYKSGNLQPPHPNMPMSRTSILEFLEGCNALMAMPETKEELRQVAKATNEMPGP 215
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3MGY1_9STRA9.710e-7556.74Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10contigD-dudresnayi_contig10:6201..7136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size743
Cds size642
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10.18.1prot_D-dudresnayi_contig10.18.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10 6300..7136 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927499.2020416-UTR-D-dudresnayi_contig10:6200..62991622927499.2020416-UTR-D-dudresnayi_contig10:6200..6299Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10 6201..6299 +
1690556777.2155125-UTR-D-dudresnayi_contig10:6200..62991690556777.2155125-UTR-D-dudresnayi_contig10:6200..6299Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10 6201..6299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927499.218286-CDS-D-dudresnayi_contig10:6299..63651622927499.218286-CDS-D-dudresnayi_contig10:6299..6365Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 6300..6365 +
1690556777.267622-CDS-D-dudresnayi_contig10:6299..63651690556777.267622-CDS-D-dudresnayi_contig10:6299..6365Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 6300..6365 +
1622927499.2289333-CDS-D-dudresnayi_contig10:6461..69691622927499.2289333-CDS-D-dudresnayi_contig10:6461..6969Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 6462..6969 +
1690556777.3162456-CDS-D-dudresnayi_contig10:6461..69691690556777.3162456-CDS-D-dudresnayi_contig10:6461..6969Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 6462..6969 +
1622927499.2436275-CDS-D-dudresnayi_contig10:7068..71361622927499.2436275-CDS-D-dudresnayi_contig10:7068..7136Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 7069..7136 +
1690556777.3322546-CDS-D-dudresnayi_contig10:7068..71361690556777.3322546-CDS-D-dudresnayi_contig10:7068..7136Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 7069..7136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10.18.1

>prot_D-dudresnayi_contig10.18.1 ID=prot_D-dudresnayi_contig10.18.1|Name=mRNA_D-dudresnayi_contig10.18.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=214bp
MFLGNLSTANEHEARKKKSGKKKSKDDVVEPTESEFPHLRRNKPGDLPIL
YAADKEGGAIPREVLLNFLNTMCEMMLDEGNINQNINEGKQKNMGLQDVA
VHFQRDVMEYNFQIERNFGCRYLASVPEHYPGDTEVIETTQKFMFHAIRS
YLNSLHQRSRRYKNGSLQPPNPHQKMSKLTIMEFLEGCNVLMTMPETRKE
LRALAASTKQMPGP
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mRNA from alignment at D-dudresnayi_contig10:6201..7136+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10.18.1 ID=mRNA_D-dudresnayi_contig10.18.1|Name=mRNA_D-dudresnayi_contig10.18.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=936bp|location=Sequence derived from alignment at D-dudresnayi_contig10:6201..7136+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCTTAAGCTAAGGCTGTCTAATTCGACAGCAAACCAAAATATACAAGTTT
ACAGTATTCTTACAGTGCAGCGTTTGATTCTGTGTGAAGTTTGAAAGTCA
TGTTTCTTGGTAATCTATCTACTGCTAACGAGCATGAAGCGCGGAAGAAG
AAAAGTGGAAAAAAGGTAATATAACTATTCAATCAGCTTGTTACAGTTCT
CCACTTCGCTTACAGTAGATATAATTACTGTAATTCTATTGAATCACACT
ACACTATGTAGAAATCGAAGGATGATGTAGTCGAGCCAACAGAGTCTGAG
TTTCCACATTTGCGTCGAAACAAGCCTGGAGATCTGCCTATTCTCTACGC
AGCCGATAAGGAAGGAGGCGCGATCCCGCGCGAAGTGTTGCTCAATTTCC
TGAACACTATGTGCGAAATGATGCTTGACGAGGGGAACATTAACCAAAAT
ATCAACGAAGGGAAGCAAAAGAATATGGGTCTTCAGGACGTGGCAGTGCA
CTTTCAGCGCGATGTCATGGAATACAACTTCCAGATCGAGCGCAACTTCG
GTTGCCGCTATCTCGCCAGCGTTCCCGAGCACTACCCAGGAGACACCGAA
GTGATAGAAACTACACAGAAATTCATGTTTCATGCGATTCGTAGCTATCT
GAATTCTCTGCACCAGCGCTCCAGACGCTACAAGAACGGCAGTTTGCAGC
CCCCCAATCCCCACCAGAAGATGTCCAAGCTCACCATCATGGAGTTCCTC
GAGGGCTGCAATGTGCTGAGTGAGTCATTTGCTGCTGTTGTATATGTAGC
AATTTTTCTGTTGTAAGTTGTTTCATCTTAACACTATATTACTGCTACTT
CTGCTGCTCTGGCCACAGTGACGATGCCGGAGACCAGGAAGGAGCTGCGC
GCGCTGGCCGCCTCCACCAAACAAATGCCCGGCCCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10:6201..7136+

>mRNA_D-dudresnayi_contig10.18.1 ID=mRNA_D-dudresnayi_contig10.18.1|Name=mRNA_D-dudresnayi_contig10.18.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1284bp|location=Sequence derived from alignment at D-dudresnayi_contig10:6201..7136+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTTCTTGGTAATCTATCTACTGCTAACGAGCATGAAGCGCGGAAGAA
GAAAAGTGGAAAAAAGATGTTTCTTGGTAATCTATCTACTGCTAACGAGC
ATGAAGCGCGGAAGAAGAAAAGTGGAAAAAAGAAATCGAAGGATGATGTA
GTCGAGCCAACAGAGTCTGAGTTTCCACATTTGCGTCGAAACAAGCCTGG
AGATCTGCCTATTCTCTACGCAGCCGATAAGGAAGGAGGCGCGATCCCGC
GCGAAGTGTTGCTCAATTTCCTGAACACTATGTGCGAAATGATGCTTGAC
GAGGGGAACATTAACCAAAATATCAACGAAGGGAAGCAAAAGAATATGGG
TCTTCAGGACGTGGCAGTGCACTTTCAGCGCGATGTCATGGAATACAACT
TCCAGATCGAGCGCAACTTCGGTTGCCGCTATCTCGCCAGCGTTCCCGAG
CACTACCCAGGAGACACCGAAGTGATAGAAACTACACAGAAATTCATGTT
TCATGCGATTCGTAGCTATCTGAATTCTCTGCACCAGCGCTCCAGACGCT
ACAAGAACGGCAGTTTGCAGCCCCCCAATCCCCACCAGAAGATGTCCAAG
CTCACCATCATGGAGTTCCTCGAGGGCTGCAATGTGCTGAAAATCGAAGG
ATGATGTAGTCGAGCCAACAGAGTCTGAGTTTCCACATTTGCGTCGAAAC
AAGCCTGGAGATCTGCCTATTCTCTACGCAGCCGATAAGGAAGGAGGCGC
GATCCCGCGCGAAGTGTTGCTCAATTTCCTGAACACTATGTGCGAAATGA
TGCTTGACGAGGGGAACATTAACCAAAATATCAACGAAGGGAAGCAAAAG
AATATGGGTCTTCAGGACGTGGCAGTGCACTTTCAGCGCGATGTCATGGA
ATACAACTTCCAGATCGAGCGCAACTTCGGTTGCCGCTATCTCGCCAGCG
TTCCCGAGCACTACCCAGGAGACACCGAAGTGATAGAAACTACACAGAAA
TTCATGTTTCATGCGATTCGTAGCTATCTGAATTCTCTGCACCAGCGCTC
CAGACGCTACAAGAACGGCAGTTTGCAGCCCCCCAATCCCCACCAGAAGA
TGTCCAAGCTCACCATCATGGAGTTCCTCGAGGGCTGCAATGTGCTGATG
ACGATGCCGGAGACCAGGAAGGAGCTGCGCGCGCTGGCCGCCTCCACCAA
ACAAATGCCCGGCCCGTGACGATGCCGGAGACCAGGAAGGAGCTGCGCGC
GCTGGCCGCCTCCACCAAACAAATGCCCGGCCCG
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