mRNA_D-dudresnayi_contig10.16.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10.16.1
Unique NamemRNA_D-dudresnayi_contig10.16.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10.16.1 vs. uniprot
Match: A0A7S0Q1R4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q1R4_9EUKA)

HSP 1 Score: 214 bits (545), Expect = 6.010e-70
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1
Query:   46 CLPGLRRAGRSQRHRGQAAHSGGVPQVRQPDRCHRQGHLPLHELRPHGALRGCHQGRAAGRGVPPGQGEGGRQTQVPALSSCSSCGNVVYEETPVRCAGAASRR 357
            CLPGLRRAGRSQRHRGQAAHSGGVPQVRQPDRCHRQGHLPLHELRPHGALRGCHQGRAAGRGVPPGQGEGGRQTQVPALSSCSSCGNVVYEETPVRCAGAASRR
Sbjct:    1 CLPGLRRAGRSQRHRGQAAHSGGVPQVRQPDRCHRQGHLPLHELRPHGALRGCHQGRAAGRGVPPGQGEGGRQTQVPALSSCSSCGNVVYEETPVRCAGAASRR 104          
BLAST of mRNA_D-dudresnayi_contig10.16.1 vs. uniprot
Match: A0A7S0XBT5_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XBT5_9STRA)

HSP 1 Score: 121 bits (304), Expect = 8.960e-32
Identity = 60/91 (65.93%), Postives = 75/91 (82.42%), Query Frame = 2
Query:    2 TSTRNFPNRLGKGADVFLASAELAAVSAIEGKLPTVEEYHKYANQIAATAKDTFRYMNFDRMEHYVDATKDVQLGEEYRLAKEKEAARLKS 274
            TSTRNFPNRLGKGA+V+LASAELAA+SAIEGKLPTVEEY KYA++I  TA DTFRY+NF++M+ Y+D +  V L  EY+   +KE ++L S
Sbjct:  131 TSTRNFPNRLGKGANVYLASAELAAISAIEGKLPTVEEYLKYASKINETASDTFRYLNFNKMKEYIDISDKVVLSNEYQTTLDKETSKLLS 221          
BLAST of mRNA_D-dudresnayi_contig10.16.1 vs. uniprot
Match: A0A812RLG3_SYMMI (AcnB protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RLG3_SYMMI)

HSP 1 Score: 119 bits (299), Expect = 1.120e-28
Identity = 61/92 (66.30%), Postives = 74/92 (80.43%), Query Frame = 2
Query:    2 TSTRNFPNRLGKGADVFLASAELAAVSAIEGKLPTVEEYHKYANQIAATAKDTFRYMNFDRMEHYVDATKDVQLGEEYRLAKEKEAARLKSL 277
            TSTRNFPNRLGKGA+VFLASAELAAV+AIEG+LPT ++Y  Y+N I ATAKDT+RY+NFDR+E +V    DV LG +Y+   +KE  RLK L
Sbjct:  672 TSTRNFPNRLGKGANVFLASAELAAVAAIEGELPTPDKYMTYSNAIDATAKDTYRYLNFDRIEEFVKRGADVDLGGDYQSYYDKELERLKKL 763          
BLAST of mRNA_D-dudresnayi_contig10.16.1 vs. uniprot
Match: A0A7R9UF22_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF22_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.230e-27
Identity = 52/91 (57.14%), Postives = 72/91 (79.12%), Query Frame = 2
Query:    2 TSTRNFPNRLGKGADVFLASAELAAVSAIEGKLPTVEEYHKYANQIAATAKDTFRYMNFDRMEHYVDATKDVQLGEEYRLAKEKEAARLKS 274
            TSTRNFPNRLG+GA+V+LASAELAAV+A+EG LP+VE+Y +Y  +I  TAKDT+RY+NF  M+ Y++A   V++ E+Y    +KE  +LK+
Sbjct:   60 TSTRNFPNRLGRGANVYLASAELAAVAAVEGTLPSVEKYLEYMKEIDTTAKDTYRYLNFHLMDEYLEAAGKVEMSEDYYPTLQKEVEKLKA 150          
BLAST of mRNA_D-dudresnayi_contig10.16.1 vs. uniprot
Match: A0A2P7QMK9_9GAMM (Aconitate hydratase B (Fragment) n=1 Tax=Zobellella taiwanensis TaxID=347535 RepID=A0A2P7QMK9_9GAMM)

HSP 1 Score: 103 bits (258), Expect = 5.630e-26
Identity = 48/67 (71.64%), Postives = 60/67 (89.55%), Query Frame = 2
Query:    2 TSTRNFPNRLGKGADVFLASAELAAVSAIEGKLPTVEEYHKYANQIAATAKDTFRYMNFDRMEHYVD 202
            TSTRNFPNRLGKGA+V+LASAELAAV+AI GKLPTV EY +YA ++ ATA DT+RY+NFD+++ YV+
Sbjct:   51 TSTRNFPNRLGKGANVYLASAELAAVAAIHGKLPTVAEYQEYAKELNATAADTYRYLNFDKLDSYVE 117          
BLAST of mRNA_D-dudresnayi_contig10.16.1 vs. uniprot
Match: B8C3V9_THAPS (Aconitate hydratase B n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3V9_THAPS)

HSP 1 Score: 110 bits (276), Expect = 1.440e-25
Identity = 51/84 (60.71%), Postives = 71/84 (84.52%), Query Frame = 2
Query:    2 TSTRNFPNRLGKGADVFLASAELAAVSAIEGKLPTVEEYHKYANQIAATAKDTFRYMNFDRMEHYVDATKDVQLGEEYRLAKEK 253
            TSTRNFPNRLG+G++V+LASAELAA+++IEGKLPTV+EY  Y N++ ATA DT+RY+NFD +  +V+A++ V++ EE R A +K
Sbjct:  787 TSTRNFPNRLGQGSNVYLASAELAAIASIEGKLPTVDEYMSYMNKVDATASDTYRYLNFDELPEFVEASEKVEISEEMREAAKK 870          
BLAST of mRNA_D-dudresnayi_contig10.16.1 vs. uniprot
Match: A0A6U5KBN7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5KBN7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.560e-25
Identity = 51/86 (59.30%), Postives = 68/86 (79.07%), Query Frame = 2
Query:    2 TSTRNFPNRLGKGADVFLASAELAAVSAIEGKLPTVEEYHKYANQIAATAKDTFRYMNFDRMEHYVDATKDVQLGEEYRLAKEKEA 259
            TSTRNFPNRLG+GA+V+LASAELAA+S+I G+LPT+EEY +Y  Q+ ATA DT+RY+NFD +  +VDA   V++  E + A +K A
Sbjct:  140 TSTRNFPNRLGQGANVYLASAELAAISSILGRLPTMEEYLEYMGQVNATAADTYRYLNFDELPDFVDAADTVEISAEMKEAAQKMA 225          
BLAST of mRNA_D-dudresnayi_contig10.16.1 vs. uniprot
Match: A0A7R9UG20_9STRA (Aconitate hydratase B n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG20_9STRA)

HSP 1 Score: 108 bits (271), Expect = 6.830e-25
Identity = 52/91 (57.14%), Postives = 72/91 (79.12%), Query Frame = 2
Query:    2 TSTRNFPNRLGKGADVFLASAELAAVSAIEGKLPTVEEYHKYANQIAATAKDTFRYMNFDRMEHYVDATKDVQLGEEYRLAKEKEAARLKS 274
            TSTRNFPNRLG+GA+V+LASAELAAV+A+EG LP+VE+Y +Y  +I  TAKDT+RY+NF  M+ Y++A   V++ E+Y    +KE  +LK+
Sbjct:  820 TSTRNFPNRLGRGANVYLASAELAAVAAVEGTLPSVEKYLEYMKEIDTTAKDTYRYLNFHLMDEYLEAAGKVEMSEDYYPTLQKEVEKLKA 910          
BLAST of mRNA_D-dudresnayi_contig10.16.1 vs. uniprot
Match: K0TRM8_THAOC (Aconitase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TRM8_THAOC)

HSP 1 Score: 105 bits (263), Expect = 4.940e-24
Identity = 50/84 (59.52%), Postives = 69/84 (82.14%), Query Frame = 2
Query:    2 TSTRNFPNRLGKGADVFLASAELAAVSAIEGKLPTVEEYHKYANQIAATAKDTFRYMNFDRMEHYVDATKDVQLGEEYRLAKEK 253
            TSTRNFPNRLG+G++V+LASAELAA+S+I GKLPTV+EY  Y  ++ ATA DT+RY+NFD +  +VDA++ V++ +E R A +K
Sbjct:  402 TSTRNFPNRLGQGSNVYLASAELAAISSIVGKLPTVDEYMSYMAKVDATADDTYRYLNFDELPDFVDASEKVEISDEMREAAKK 485          
BLAST of mRNA_D-dudresnayi_contig10.16.1 vs. uniprot
Match: A0A7S3DQ81_9STRA (Aconitate hydratase B n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DQ81_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.900e-24
Identity = 49/84 (58.33%), Postives = 67/84 (79.76%), Query Frame = 2
Query:    2 TSTRNFPNRLGKGADVFLASAELAAVSAIEGKLPTVEEYHKYANQIAATAKDTFRYMNFDRMEHYVDATKDVQLGEEYRLAKEK 253
            TSTRNFPNRLG+GA+V+LASAELAA+++IEGKLPTV+EY  Y +Q+ ATA DT+RY+NFD +  +V +   V++ +E + A  K
Sbjct:  704 TSTRNFPNRLGQGANVYLASAELAAIASIEGKLPTVDEYLSYMDQVNATAADTYRYLNFDELPDFVQSASSVEISDEMKAAAHK 787          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0Q1R4_9EUKA6.010e-70100.00Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S0XBT5_9STRA8.960e-3265.93Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A812RLG3_SYMMI1.120e-2866.30AcnB protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A7R9UF22_9STRA1.230e-2757.14Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A2P7QMK9_9GAMM5.630e-2671.64Aconitate hydratase B (Fragment) n=1 Tax=Zobellell... [more]
B8C3V9_THAPS1.440e-2560.71Aconitate hydratase B n=1 Tax=Thalassiosira pseudo... [more]
A0A6U5KBN7_9STRA2.560e-2559.30Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7R9UG20_9STRA6.830e-2557.14Aconitate hydratase B n=1 Tax=Pinguiococcus pyreno... [more]
K0TRM8_THAOC4.940e-2459.52Aconitase domain-containing protein n=1 Tax=Thalas... [more]
A0A7S3DQ81_9STRA5.900e-2458.33Aconitate hydratase B n=1 Tax=Amphiprora paludosa ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10contigD-dudresnayi_contig10:148..565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size418
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927499.5031877-CDS-D-dudresnayi_contig10:147..5131622927499.5031877-CDS-D-dudresnayi_contig10:147..513Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 148..513 +
1690556777.4809122-CDS-D-dudresnayi_contig10:147..5131690556777.4809122-CDS-D-dudresnayi_contig10:147..513Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 148..513 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927499.5226693-UTR-D-dudresnayi_contig10:513..5651622927499.5226693-UTR-D-dudresnayi_contig10:513..565Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10 514..565 +
1690556777.4998627-UTR-D-dudresnayi_contig10:513..5651690556777.4998627-UTR-D-dudresnayi_contig10:513..565Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10 514..565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10.16.1prot_D-dudresnayi_contig10.16.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10 148..513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10.16.1

>prot_D-dudresnayi_contig10.16.1 ID=prot_D-dudresnayi_contig10.16.1|Name=mRNA_D-dudresnayi_contig10.16.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=122bp
HLHPQLPQPSGQGRRCLPGLRRAGRSQRHRGQAAHSGGVPQVRQPDRCHR
QGHLPLHELRPHGALRGCHQGRAAGRGVPPGQGEGGRQTQVPALSSCSSC
GNVVYEETPVRCAGAASRRCR*
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mRNA from alignment at D-dudresnayi_contig10:148..565+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10.16.1 ID=mRNA_D-dudresnayi_contig10.16.1|Name=mRNA_D-dudresnayi_contig10.16.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=418bp|location=Sequence derived from alignment at D-dudresnayi_contig10:148..565+ (Desmarestia dudresnayi DdudBR16 monoicous)
CACCTCCACCCGCAACTTCCCCAACCGTCTGGGCAAGGGCGCCGATGTCT TCCTGGCCTCCGCCGAGCTGGCCGCAGTCAGCGCCATCGAGGGCAAGCTG CCCACAGTGGAGGAGTACCACAAGTACGCCAACCAGATCGCTGCCACCGC CAAGGACACCTTCCGCTACATGAACTTCGACCGCATGGAGCACTACGTGG ATGCCACCAAGGACGTGCAGCTGGGCGAGGAGTACCGCCTGGCCAAGGAG AAGGAGGCCGCCAGACTCAAGTCCCTGCACTAAGCAGCTGCAGCAGTTGT GGCAATGTTGTGTATGAGGAGACCCCTGTCAGATGTGCAGGGGCAGCAAG TCGGCGCTGTCGCTGATTGATGTTGTTTCTGTCTTCGTGGATGCATTTTA AAGAGAAAGTAATATTTG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10:148..565+

>mRNA_D-dudresnayi_contig10.16.1 ID=mRNA_D-dudresnayi_contig10.16.1|Name=mRNA_D-dudresnayi_contig10.16.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at D-dudresnayi_contig10:148..565+ (Desmarestia dudresnayi DdudBR16 monoicous)
CACCTCCACCCGCAACTTCCCCAACCGTCTGGGCAAGGGCGCCGATGTCT
TCCTGGCCTCCGCCGAGCTGGCCGCAGTCAGCGCCATCGAGGGCAAGCTG
CCCACAGTGGAGGAGTACCACAAGTACGCCAACCAGATCGCTGCCACCGC
CAAGGACACCTTCCGCTACATGAACTTCGACCGCATGGAGCACTACGTGG
ATGCCACCAAGGACGTGCAGCTGGGCGAGGAGTACCGCCTGGCCAAGGAG
AAGGAGGCCGCCAGACTCAAGTCCCTGCACTAAGCAGCTGCAGCAGTTGT
GGCAATGTTGTGTATGAGGAGACCCCTGTCAGATGTGCAGGGGCAGCAAG
TCGGCGCTGTCGCTGACACCTCCACCCGCAACTTCCCCAACCGTCTGGGC
AAGGGCGCCGATGTCTTCCTGGCCTCCGCCGAGCTGGCCGCAGTCAGCGC
CATCGAGGGCAAGCTGCCCACAGTGGAGGAGTACCACAAGTACGCCAACC
AGATCGCTGCCACCGCCAAGGACACCTTCCGCTACATGAACTTCGACCGC
ATGGAGCACTACGTGGATGCCACCAAGGACGTGCAGCTGGGCGAGGAGTA
CCGCCTGGCCAAGGAGAAGGAGGCCGCCAGACTCAAGTCCCTGCACTAAG
CAGCTGCAGCAGTTGTGGCAATGTTGTGTATGAGGAGACCCCTGTCAGAT
GTGCAGGGGCAGCAAGTCGGCGCTGTCGCTGA
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