mRNA_C-australica_Contig_10.16.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10.16.1
Unique NamemRNA_C-australica_Contig_10.16.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: A0A836CMW8_9STRA (ThiF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW8_9STRA)

HSP 1 Score: 270 bits (689), Expect = 2.620e-79
Identity = 140/268 (52.24%), Postives = 183/268 (68.28%), Query Frame = 2
Query:  158 YDARFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVL-----------TGKGFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAEKPPT--LTPSTANEGSSSFRKCDSLYGTACFVTGMFGFLAASLVVQVLTGA 922
            Y  RF G+A+L+G E   +LRDAHVCV+GLGGVGSW+ EALARSGVG LTLIDLD IC+SN NRQ+HA   TIGK K   +Q+RV+DINP+C V    DFV+ D V ++L           T   +D VLDA+DS++DKC +++  R + +PVVTVGAAGG +D   +  +D+TR ++D LL  V+K LRQ +GFP G+KRN++GRKWGVA+V+S E P    LT S           CD  +GTA FVTG+FG +AA +V  ++ GA
Sbjct:    9 YALRFAGVAKLYGQEGLQRLRDAHVCVVGLGGVGSWSVEALARSGVGRLTLIDLDSICISNTNRQMHALTGTIGKSKAQVLQQRVLDINPDCDVDVRLDFVSPDTVGELLLVADADAAGGRTLGRYDCVLDAIDSMEDKCALLDACRRVRMPVVTVGAAGGRADPARVAVADLTRVDYDSLLFRVRKTLRQDFGFPRGTKRNIRGRKWGVAAVYSTEVPEAEALTASGEVGPRMGLGGCDGSFGTASFVTGVFGLMAAGVVAGLIAGA 276          
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: A0A2A2RX67_9BACT (tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA n=1 Tax=Pedosphaera sp. Tous-C6FEB TaxID=1982324 RepID=A0A2A2RX67_9BACT)

HSP 1 Score: 237 bits (604), Expect = 3.700e-71
Identity = 136/257 (52.92%), Postives = 171/257 (66.54%), Query Frame = 2
Query:  158 YDARFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGKGFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAEKPPTLTP---STANEGSSSFRK--CDSLYGTACFVTGMFGFLAASLVVQVL 913
            +D RFGGIA+L   E  A+LR AHVCV+G+GGVGSW  EALARSGVGALTLIDLD++C++NVNRQLHA D T+G+ KV  M  RV  INPEC V+AVA+F T      +LT   F  V+DA+D+V +KC ++ L RA  LPV+  GAAGG  DA  +R +D+  +  DRLL  V+KRLR+ +GFP        G   GVA V+SAE P    P   + A +GS S  +  C+  YG+A FVTG FGF AA  VV+ L
Sbjct:    4 FDQRFGGIARLVSAEGLARLRAAHVCVVGIGGVGSWTVEALARSGVGALTLIDLDEVCITNVNRQLHALDGTVGRAKVEVMAERVRLINPECRVSAVAEFFTEATAARLLT-PDFSYVVDAIDAVANKCRLLALCRARKLPVIACGAAGGRLDATAVRLADLADATHDRLLAEVRKRLRKEHGFPPP------GEPTGVACVFSAETPVLPEPPACAEAGQGSDSAPRLNCEWGYGSATFVTGTFGFAAAGAVVRRL 253          
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: A0A6I1K9H6_9BACT (UBA/THIF-type NAD/FAD binding protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A6I1K9H6_9BACT)

HSP 1 Score: 230 bits (587), Expect = 1.160e-68
Identity = 129/251 (51.39%), Postives = 162/251 (64.54%), Query Frame = 2
Query:  167 RFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGKGFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAEKPPTLTP----STANEGSSSFRKCDSLYGTACFVTGMFGFLAASLVVQ 907
            RFGGIA+L G     +LR AHVCV+G+GGVGSW  EALARSGVGALTLIDLD++CV+N+NRQ+HA D T+G+ KV  M  RV  INPEC VTAVA+F T  N   +L    F  V+DA+DSV +KC ++ L R   LPV++ GAAGG  DA  +R +D+     DRLL  V+KRLR+ +GFP        G++ GV +V+S E P    P    S   E  S    C+  YG+A FVTG FGF AA  V +
Sbjct:    5 RFGGIARLVGAHGLQRLRAAHVCVVGIGGVGSWTVEALARSGVGALTLIDLDEVCVTNINRQIHALDGTVGRAKVDVMAERVRLINPECRVTAVAEFFTEANAARLLA-PNFGFVVDAIDSVSNKCRLLALCRERKLPVISCGAAGGRLDATAVRVADLANVTHDRLLAEVRKRLRKEHGFPAT------GKQLGVTAVFSPEAPIAPAPADCASAVGEPDSPRLNCEWGYGSASFVTGTFGFAAAGWVAR 248          
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: A0A2A2RSD6_9BACT (tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA n=1 Tax=Pedosphaera sp. Tous-C6FEB TaxID=1982324 RepID=A0A2A2RSD6_9BACT)

HSP 1 Score: 229 bits (583), Expect = 4.850e-68
Identity = 130/256 (50.78%), Postives = 168/256 (65.62%), Query Frame = 2
Query:  161 DARFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGKGFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAE-----KPPTLTPSTANEGSSSFRKCDSLYGTACFVTGMFGFLAASLVVQVL 913
            D RFGGIA+L      A+LR AHVCV+G+GGVGSWA EALARSGVGALTLIDLD++CV+N+NRQLHA + T+G+ KV  M  RV  I+PEC+VTAVA+F T  N   +L   G  AV+DA+D+V +K  ++ L     LPVVT GAAGG  +A  +R +D+  +  DRLL  V+KRLR  +GFP        G+  GVA+V+S E     +PP     T  + ++    C+  YG+A FVTG FGF AA  VV+ L
Sbjct:    3 DERFGGIARLVSDAGLARLRSAHVCVVGIGGVGSWAVEALARSGVGALTLIDLDEVCVTNINRQLHALEGTVGRAKVEVMAERVRLIHPECTVTAVAEFFTEANAGRLLA-PGISAVVDAIDAVGNKSRLLALCVQRGLPVVTCGAAGGRLEATAVRLADLADASHDRLLAQVRKRLRGEFGFPAA------GKPMGVAAVFSPEAPILPEPPACATETEKDEATLRLNCEWGYGSATFVTGTFGFAAAGWVVRKL 251          
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: A0A7S4PI85_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PI85_GUITH)

HSP 1 Score: 233 bits (593), Expect = 6.180e-68
Identity = 121/265 (45.66%), Postives = 175/265 (66.04%), Query Frame = 2
Query:  167 RFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGK-------------GFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTG---SKRNL-KGRKWGVASVWSAEKP-PTLTPSTANEGSSSFRKCDSLYGTACFVTGMFGFLAASLVVQ 907
            RF GI +L+G  +  +LR+AHVCV+GLGGVGSW  E+ ARSG+G +TL+DLD++C+SN+NRQL A DST+G+ K   ++ R++DINPEC+V+ V  F+  +N   +L+G               FD V+DA+DSVDDK  +I+    + +P++T G AGG++D   IR+ ++T+ E D LL HV+K+LRQ YGFP G    KRN+ + + W + +V+S+EKP  TL    A++G   FR CD   GT+  VTG FG    S +V+
Sbjct:   83 RFSGIKRLYGSSSLERLRNAHVCVVGLGGVGSWVAESCARSGIGKITLVDLDEVCISNINRQLCALDSTVGRPKAEVLRARILDINPECNVSCVLQFLRRENALSILSGMDGDEGIEPQRTNCSFDFVVDAIDSVDDKAALISACTFLKVPIITSGGAGGLTDPTAIRSEELTKVEDDELLFHVRKKLRQFYGFPQGLPHRKRNVCRVKPWKIQAVYSSEKPIQTLVEEAASQG---FRSCDFSMGTSAMVTGSFGLAMGSFIVK 344          
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: A0A2G4I8R5_9BACT (tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA n=1 Tax=Pedosphaera sp. TaxID=2024890 RepID=A0A2G4I8R5_9BACT)

HSP 1 Score: 226 bits (576), Expect = 5.120e-67
Identity = 128/254 (50.39%), Postives = 163/254 (64.17%), Query Frame = 2
Query:  161 DARFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGKGFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAE-----KPPTLTPSTANEGSSSFRKCDSLYGTACFVTGMFGFLAASLVVQ 907
            D RFGGIA+L   E   +LR AHVCV+G+GGVGSW  EALARSGVGALTLIDLD++CV+N+NRQLHA D TIG+ KV  M  RV  INP+C VTAV +F T  + +  L    F  V+DA+D++ +KC ++ L R   LPV+  GAAGG  DA  +R +D+  +  DRLL  V+KRLRQ++GFP        G  +GVA V+SAE     +PP           +    C+  YG+A FVTG FGF AA  VV+
Sbjct:    3 DERFGGIARLVSAEGLQRLRAAHVCVVGIGGVGSWTVEALARSGVGALTLIDLDEVCVTNINRQLHALDGTIGRSKVEVMAERVRLINPDCRVTAVTEFFTEQSTQR-LFAPDFTCVVDAIDALGNKCRLLALCRERALPVIACGAAGGRLDATQVRVADLADATRDRLLAEVRKRLRQQHGFPPP------GEPFGVACVFSAETPVLPEPPACASEEPGNQPAPRLNCEWGYGSATFVTGTFGFAAAGWVVR 249          
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: B9XDN1_PEDPL (UBA/THIF-type NAD/FAD binding protein n=1 Tax=Pedosphaera parvula (strain Ellin514) TaxID=320771 RepID=B9XDN1_PEDPL)

HSP 1 Score: 225 bits (573), Expect = 1.620e-66
Identity = 130/263 (49.43%), Postives = 163/263 (61.98%), Query Frame = 2
Query:  152 SLYDARFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGKGFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAEKP--PTLTPSTANE---GSSSFRKCDSLYGTACFVTGMFGFLAASLVVQVLTGAE 925
            S Y+ RFGGI +L+      ++R AHVCVIG+GGVGSWA EALARSG G LTLIDLD++CVSNVNRQLHA D  IGK KV  M RR   INPEC V AV  F T  N +++L  + FD VLDA+DS   KC +I L R   +P++T GAAGG  +   I+  D+T+S  DRLL   + +LR R+GFP G K      K+ VA V S E P  P+   S   +   G+     C S +G+A FVTG F FLA + +V  +   E
Sbjct:    2 SQYEERFGGIGRLYSAAGLERIRSAHVCVIGIGGVGSWAVEALARSGTGELTLIDLDEVCVSNVNRQLHALDGEIGKSKVEVMARRTQAINPECKVHAVNAFFTESNAQEILATR-FDYVLDAIDSSSKKCLMIALCRDKGIPIITTGAAGGRRNPAAIQLVDLTQSTNDRLLRETRSKLRTRHGFPRGEK------KFNVACVCSTELPVYPSQDGSVCPQPEPGTDHRLNCSSGFGSATFVTGAFAFLATAHIVHEIAQRE 257          
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: UPI00178549A2 (tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA n=1 Tax=Pelagicoccus enzymogenes TaxID=2773457 RepID=UPI00178549A2)

HSP 1 Score: 221 bits (564), Expect = 4.470e-65
Identity = 126/263 (47.91%), Postives = 165/263 (62.74%), Query Frame = 2
Query:  158 YDARFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGKGFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAEKP--PTLTPSTANE--GSSSFR-KCDSLYGTACFVTGMFGFLAASLVVQVLTGAEPG 931
            YD RFGGI +L+G  A  + R AHVC++G+GGVGSW  EALARSG+G LTL+DLDDIC SN+NRQ+HA D  IG  K+  M +R   INPEC V+ +  F+T  NV ++L   GFD V+DA+DS + K  +I   +    PV+T+G AGG  D   ++  D+ RS  D+LL  V+K+LRQ++GFP   KR     K+ +  V+S E+P  P        E  GS S R  C S YG A  +TG FGF AAS V++ L G E G
Sbjct:    8 YDFRFGGIGRLYGAAALQRFRAAHVCIVGIGGVGSWIVEALARSGIGKLTLVDLDDICESNINRQIHALDGLIGASKIETMAQRCRAINPECEVSTLHTFLTAKNVDEILAA-GFDYVVDAIDSTNHKVALIAACKQSETPVLTIGGAGGRIDPTQVQICDLARSINDQLLKRVRKQLRQQHGFPRQKKR-----KFHIDCVFSPEEPLYPESCDIDGEEELGSKSVRLDCSSGYGAATHLTGTFGFFAASQVLKSLAGIEAG 264          
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: A0A350EY84_9BACT (tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A350EY84_9BACT)

HSP 1 Score: 221 bits (563), Expect = 5.210e-65
Identity = 123/259 (47.49%), Postives = 165/259 (63.71%), Query Frame = 2
Query:  158 YDARFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGKGFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAE------KPPTLTPSTANEGSSSFRKCDSLYGTACFVTGMFGFLAASLVVQVLT 916
            YD RFGGIA+L+G E   +LR+AHV V+G+GGVGSWA EALARSGVG +TLIDLDDIC++N NRQ+HA  + IG+LKV  M+ R+  INP+C VT    F+T  NV  +L   GF  VLDA+D+V +KC +I   R  +  +VT G AGG  D   +R  D+     D L+  V+++LR+ +GFP   K        GV  V+S E      +  ++  +  N+G S    CDS YG+A FVTG FGF AA+ V+++LT
Sbjct:    4 YDQRFGGIARLYGREGLERLREAHVAVVGIGGVGSWAAEALARSGVGRITLIDLDDICITNTNRQVHAVAADIGRLKVEAMRDRIAAINPDCRVTVEPVFLTAANVGPLLAA-GFSCVLDAIDNVANKCHLIAACRTSDCRIVTTGGAGGRIDPTQLRVGDLAHVTHDPLIRQVRRQLRREHGFPDEPKTTF-----GVPCVYSPEPVRYPWRDGSVCLTKENDGESLRLDCDSGYGSATFVTGAFGFAAAAEVLRLLT 256          
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: A0A7V4MHW5_9BACT (tRNA threonylcarbamoyladenosine dehydratase n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7V4MHW5_9BACT)

HSP 1 Score: 221 bits (563), Expect = 6.900e-65
Identity = 126/261 (48.28%), Postives = 162/261 (62.07%), Query Frame = 2
Query:  158 YDARFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGKGFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAEKPPTLTP------STANEGSSSFRKCDSLYGTACFVTGMFGFLAASLVVQVLTGA 922
            Y   FGG+ +L+GV  Q +LR AHVCVIG+GGVGSWA EALARSGVGALTL+DLDDICVSN NRQLHA +  + K KV  +  RV  INPEC V  V  F    N +++L  + FD V DA+D+V +K   + L R + LPV+T G AGG  D   +R +D+  +  DRLL  ++K LR  +GFP G       RK+G+ +V S E PP          +T   G+     C S  GTA FVTG FGF+AA+ +V+ + GA
Sbjct:    4 YQLAFGGVRRLYGVAGQGRLRRAHVCVIGVGGVGSWAVEALARSGVGALTLVDLDDICVSNTNRQLHALEGELHKPKVESLAARVRAINPECQVHPVRAFFVAANARELLAPR-FDFVFDAMDAVREKALCLALCRELGLPVITSGGAGGRRDPARVRVTDLALATHDRLLQSLRKTLRAEHGFPRGE------RKFGIEAVCSTE-PPVFPHRDGGVCATREAGTDLRLDCRSGLGTATFVTGTFGFVAAARIVEQIAGA 256          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMW8_9STRA2.620e-7952.24ThiF domain-containing protein n=1 Tax=Tribonema m... [more]
A0A2A2RX67_9BACT3.700e-7152.92tRNA cyclic N6-threonylcarbamoyladenosine(37) synt... [more]
A0A6I1K9H6_9BACT1.160e-6851.39UBA/THIF-type NAD/FAD binding protein n=1 Tax=Verr... [more]
A0A2A2RSD6_9BACT4.850e-6850.78tRNA cyclic N6-threonylcarbamoyladenosine(37) synt... [more]
A0A7S4PI85_GUITH6.180e-6845.66Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
A0A2G4I8R5_9BACT5.120e-6750.39tRNA cyclic N6-threonylcarbamoyladenosine(37) synt... [more]
B9XDN1_PEDPL1.620e-6649.43UBA/THIF-type NAD/FAD binding protein n=1 Tax=Pedo... [more]
UPI00178549A24.470e-6547.91tRNA cyclic N6-threonylcarbamoyladenosine(37) synt... [more]
A0A350EY84_9BACT5.210e-6547.49tRNA cyclic N6-threonylcarbamoyladenosine(37) synt... [more]
A0A7V4MHW5_9BACT6.900e-6548.28tRNA threonylcarbamoyladenosine dehydratase n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10contigC-australica_Contig_10:46871..49053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog349521.HCH_01659
PFAMsThiF
Model size1602
Max annot lvl135619|Oceanospirillales
KEGG koko:K22132
Hectar predicted targeting categorysignal peptide
Exons8
Evalue2.06e-66
EggNOG OGsCOG1179@1|root,COG1179@2|Bacteria,1MWXR@1224|Proteobacteria,1RMT3@1236|Gammaproteobacteria,1XHB5@135619|Oceanospirillales
DescriptionUBA THIF-type NAD FAD binding
Cds size936
COG categoryH
BRITEko00000,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10.16.1prot_C-australica_Contig_10.16.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10 46926..48442 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586732.0764196-UTR-C-australica_Contig_10:46870..469251682586732.0764196-UTR-C-australica_Contig_10:46870..46925Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10 46871..46925 +
1682586732.1624074-UTR-C-australica_Contig_10:48442..490531682586732.1624074-UTR-C-australica_Contig_10:48442..49053Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10 48443..49053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586732.0859628-CDS-C-australica_Contig_10:46925..470641682586732.0859628-CDS-C-australica_Contig_10:46925..47064Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 46926..47064 +
1682586732.0950372-CDS-C-australica_Contig_10:47125..472011682586732.0950372-CDS-C-australica_Contig_10:47125..47201Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 47126..47201 +
1682586732.10452-CDS-C-australica_Contig_10:47278..473961682586732.10452-CDS-C-australica_Contig_10:47278..47396Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 47279..47396 +
1682586732.1141825-CDS-C-australica_Contig_10:47515..476481682586732.1141825-CDS-C-australica_Contig_10:47515..47648Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 47516..47648 +
1682586732.1244283-CDS-C-australica_Contig_10:47714..479301682586732.1244283-CDS-C-australica_Contig_10:47714..47930Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 47715..47930 +
1682586732.1348603-CDS-C-australica_Contig_10:48031..481061682586732.1348603-CDS-C-australica_Contig_10:48031..48106Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 48032..48106 +
1682586732.1441607-CDS-C-australica_Contig_10:48179..482361682586732.1441607-CDS-C-australica_Contig_10:48179..48236Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 48180..48236 +
1682586732.1531408-CDS-C-australica_Contig_10:48320..484421682586732.1531408-CDS-C-australica_Contig_10:48320..48442Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 48321..48442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10.16.1

>prot_C-australica_Contig_10.16.1 ID=prot_C-australica_Contig_10.16.1|Name=mRNA_C-australica_Contig_10.16.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=312bp
MGVRRLVIAPSLAFPFLSFFSSCVGAFTMTGGSLYDARFGGIAQLHGVEA
QAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQL
HATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGKGFD
AVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSE
FDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAEKPPTLTPSTA
NEGSSSFRKCDSLYGTACFVTGMFGFLAASLVVQVLTGAEPGWSSSALRY
RREVLAEAAAE*
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mRNA from alignment at C-australica_Contig_10:46871..49053+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10.16.1 ID=mRNA_C-australica_Contig_10.16.1|Name=mRNA_C-australica_Contig_10.16.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2183bp|location=Sequence derived from alignment at C-australica_Contig_10:46871..49053+ (Chrysoparadoxa australica CS_1217)
ACAGCATCGAAAGGGGTTAGATAGCTTAATTTCCCTAAGGGGTGGGCAGC GGGCAATGGGAGTAAGGAGGTTGGTGATTGCGCCTTCCCTCGCCTTCCCC TTCCTCTCCTTCTTCTCCTCCTGCGTAGGCGCCTTTACAATGACAGGAGG CTCGCTCTACGATGCCAGATTTGGTGGCATTGCCCAGCTGCATGGTACTT CCGCTCTCCTTTTTTCCTTCTCTCGGCTGCCCCTGACTGCTCCAACTTGC TGTAGGTGTGGAGGCGCAGGCTAAACTTAGAGATGCCCATGTGTGCGTTA TTGGCCTAGGAGGAGTCGGAAGCTGGGCATGGTGGGCTTGAACCTGACCC AGTCAAATCGCACTGCTTCCCCCTAACCCACCGAACCAACTGAACCCTCA ACCTGAAGTGAAGCACTGGCAAGGAGTGGCGTAGGCGCGCTCACACTGAT TGACTTGGACGATATCTGTGTGAGTAATGTTAATAGGCAGCTGCATGCCA CAGACTCAACAATTGGGAAGCTAAAGGTACCCACTCAACCCGTAGACTTA GGCCTACCTGCCTTTCTTGCGTTTATATTTAACACGGATGTATCCCACCA TGAATACAAGTGGCTTGCTCAGTCATTCACTTCTCGCGCAAATAGGTCCA CGAGATGCAGCGACGGGTGATGGATATCAACCCAGAATGCTCAGTGACAG CGGTGGCTGATTTTGTCACAGGCGATAACGTCAAAGACGTCCTTACTGGA AAGGGCTTTGATGCAGTACTGGACGCTGGTAAGTACTAGCATCCCGTGTA AGACTCAAGCCTTCATTAGCTTTGACAGCCCTTTTCACGCACAGTTGACA GCGTGGACGATAAGTGCGAAATAATCAACTTGGCAAGAGCCATCAACTTG CCGGTGGTTACTGTTGGTGCAGCTGGTGGCATGTCAGATGCAGGGCTTAT ACGAACCTCTGACATTACGCGCTCTGAGTTTGATCGTCTCTTACACCACG TGAAGAAACGCCTGCGCCAAAGATATGGCTTCCCAACCGGCTCCAAGCGG AACCTCAAGGGTATATCACCAGCACTTTGCTTCCAATTGATAACCCCAGC CAAACATAGCCTTAGAGCCACATGAAAATTGATTGGTCACATTAGTAAGG ATATGCCACAGGTAGAAAATGGGGGGTAGCATCCGTGTGGAGCGCAGAGA AACCACCAACTTTGACTCCATCGACTGCAAATGAAGGTGAGATGATAATT TAGCCTTAAGCCCAGATTGCAGCTAAGTGATGCACCAGTATGTGACCTGT TTGCCGCAGGGAGCAGCTCCTTCCGCAAGTGTGACAGCTTGTATGGCACA GCGTGCTTTGTCACAGGTAGCACACACAGCCTGTCCTGATCCCAAGCTCT GCCTGCGCCTGCTTACTGCCTTCTAACGCCCAGCCTTTGCCACGGCACAG GGATGTTTGGCTTTCTTGCTGCTAGTTTGGTTGTTCAAGTTTTGACGGGA GCCGAGCCTGGATGGTCCAGCTCAGCCCTGCGGTACCGCAGAGAGGTGCT GGCGGAAGCAGCGGCCGAGTAAAGCAGGCCCAAGAGCCTGCCTATTCACG CCATGTGACTACAAGCTTGCTAGAAGAGAGCCCTCACCTGCACAGTGCGG CTATGTTACTGAAACAAAATCCCTGTGAATTGAATTTACTCCCCCCGCGT CTGTTGCTTCTTGAGTCAGCTACCGCGAGTCACCACTGTCAGAAGCTATA TTGAATACCCTATCTTTCCATCCATCAGCGTCCCCCTCCTGCGTGCTCCC AGCCTCTTGGGGCTCAGGCTCATCAGGCATGCTCCCGTGACCTGGGGCTG TCCTTCTGAAAGAACCCTTCTTGCTTTTACCAACCCAGTGCAGCAAGTTA CGCAGCTTGGACTTACTGTGGGATGTACGGAGCAGCCTGACATTGAGGCA GTGGTGCCGTAGAGAGAGTTAGTTGAGGTGATTCATGCACAACGACAGAG GCAGATGTGACTTGACTCAGGGGCATGTGAAGTGTGGGGCAGGGGAGCAG CGGTGCAAGCAGCTACACAGCAGCAGCAGCATACAGCTATGGCGTGAGTA GGTTTTGAGTGCTCAAGTGCATGGCCTGTAAGGCTTAGCTTCGTGCTGTT ACCTTTGAGCACTTAGCGTGCGCAGACCCTGGC
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Coding sequence (CDS) from alignment at C-australica_Contig_10:46871..49053+

>mRNA_C-australica_Contig_10.16.1 ID=mRNA_C-australica_Contig_10.16.1|Name=mRNA_C-australica_Contig_10.16.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=936bp|location=Sequence derived from alignment at C-australica_Contig_10:46871..49053+ (Chrysoparadoxa australica CS_1217)
ATGGGAGTAAGGAGGTTGGTGATTGCGCCTTCCCTCGCCTTCCCCTTCCT
CTCCTTCTTCTCCTCCTGCGTAGGCGCCTTTACAATGACAGGAGGCTCGC
TCTACGATGCCAGATTTGGTGGCATTGCCCAGCTGCATGGTGTGGAGGCG
CAGGCTAAACTTAGAGATGCCCATGTGTGCGTTATTGGCCTAGGAGGAGT
CGGAAGCTGGGCATGTGAAGCACTGGCAAGGAGTGGCGTAGGCGCGCTCA
CACTGATTGACTTGGACGATATCTGTGTGAGTAATGTTAATAGGCAGCTG
CATGCCACAGACTCAACAATTGGGAAGCTAAAGGTCCACGAGATGCAGCG
ACGGGTGATGGATATCAACCCAGAATGCTCAGTGACAGCGGTGGCTGATT
TTGTCACAGGCGATAACGTCAAAGACGTCCTTACTGGAAAGGGCTTTGAT
GCAGTACTGGACGCTGTTGACAGCGTGGACGATAAGTGCGAAATAATCAA
CTTGGCAAGAGCCATCAACTTGCCGGTGGTTACTGTTGGTGCAGCTGGTG
GCATGTCAGATGCAGGGCTTATACGAACCTCTGACATTACGCGCTCTGAG
TTTGATCGTCTCTTACACCACGTGAAGAAACGCCTGCGCCAAAGATATGG
CTTCCCAACCGGCTCCAAGCGGAACCTCAAGGGTAGAAAATGGGGGGTAG
CATCCGTGTGGAGCGCAGAGAAACCACCAACTTTGACTCCATCGACTGCA
AATGAAGGGAGCAGCTCCTTCCGCAAGTGTGACAGCTTGTATGGCACAGC
GTGCTTTGTCACAGGGATGTTTGGCTTTCTTGCTGCTAGTTTGGTTGTTC
AAGTTTTGACGGGAGCCGAGCCTGGATGGTCCAGCTCAGCCCTGCGGTAC
CGCAGAGAGGTGCTGGCGGAAGCAGCGGCCGAGTAA
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