mRNA_C-australica_Contig_1046.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1046.2.1
Unique NamemRNA_C-australica_Contig_1046.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1046.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1046contigC-australica_Contig_1046:7884..11133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZX1
Model size1480
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons12
Evalue2.7e-28
EggNOG OGs2CZ96@1|root,2S95Y@2759|Eukaryota
Cds size1458
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1046.2.1prot_C-australica_Contig_1046.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1046 7884..11111 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586781.8360512-CDS-C-australica_Contig_1046:7883..79441682586781.8360512-CDS-C-australica_Contig_1046:7883..7944Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1046 7884..7944 -
1682586781.8469398-CDS-C-australica_Contig_1046:8028..80901682586781.8469398-CDS-C-australica_Contig_1046:8028..8090Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1046 8029..8090 -
1682586781.8571436-CDS-C-australica_Contig_1046:8255..83241682586781.8571436-CDS-C-australica_Contig_1046:8255..8324Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1046 8256..8324 -
1682586781.8663337-CDS-C-australica_Contig_1046:8504..86881682586781.8663337-CDS-C-australica_Contig_1046:8504..8688Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1046 8505..8688 -
1682586781.876456-CDS-C-australica_Contig_1046:8796..88751682586781.876456-CDS-C-australica_Contig_1046:8796..8875Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1046 8797..8875 -
1682586781.884703-CDS-C-australica_Contig_1046:9130..92281682586781.884703-CDS-C-australica_Contig_1046:9130..9228Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1046 9131..9228 -
1682586781.8925023-CDS-C-australica_Contig_1046:9339..93831682586781.8925023-CDS-C-australica_Contig_1046:9339..9383Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1046 9340..9383 -
1682586781.9002514-CDS-C-australica_Contig_1046:9528..96171682586781.9002514-CDS-C-australica_Contig_1046:9528..9617Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1046 9529..9617 -
1682586781.909735-CDS-C-australica_Contig_1046:9741..98341682586781.909735-CDS-C-australica_Contig_1046:9741..9834Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1046 9742..9834 -
1682586781.9187229-CDS-C-australica_Contig_1046:10127..104011682586781.9187229-CDS-C-australica_Contig_1046:10127..10401Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1046 10128..10401 -
1682586781.927393-CDS-C-australica_Contig_1046:10504..105911682586781.927393-CDS-C-australica_Contig_1046:10504..10591Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1046 10505..10591 -
1682586781.9420977-CDS-C-australica_Contig_1046:10793..111111682586781.9420977-CDS-C-australica_Contig_1046:10793..11111Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1046 10794..11111 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586781.954687-UTR-C-australica_Contig_1046:11111..111331682586781.954687-UTR-C-australica_Contig_1046:11111..11133Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1046 11112..11133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1046.2.1

>prot_C-australica_Contig_1046.2.1 ID=prot_C-australica_Contig_1046.2.1|Name=mRNA_C-australica_Contig_1046.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=486bp
MLASAGGDRKKDVLQRGGSKRDLVSRGSSKRDLSSGGSKRNLQSAGGASS
KHRHEESTSATGKTTEDGHGKQQRPAPLRGLKGKKKKKLPGKGLVSAEPR
DPAQEKLKLTPMERFNQLREELLLADLTTPSDNRMVKRRFSMTLGTTSQV
LAERVCVGGARGHEQKHTVHSHLDCTSAGDIFYSNGDGSFGSLHASGGRQ
INRKRKRKSEGDAERAAEKRERQLATGAPLVVQMQRVWKMVPSSRDTRPR
WLKEYEDGTIQYKLEFSNSSEKEVHFGAPMPWHILEQYVADQAPTHRYSV
LRPYQRVDFFKALSIPDFLQIAFAEIVKQFPETIGGGLDSRKWHKLMASL
GIFDDIRDSQRHMELDKIYRTRTRQYKHEVHKYHHELAKLESAAAHQAGN
LKAPEQGSKTTRPSYDGSHLAKAMKHVPDQDLRMDSKSFIDALTSVAEMR
WPDQPQAQAMHELVFGHLLVHNDFLSVKLSAWRYL*
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mRNA from alignment at C-australica_Contig_1046:7884..11133-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1046.2.1 ID=mRNA_C-australica_Contig_1046.2.1|Name=mRNA_C-australica_Contig_1046.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3250bp|location=Sequence derived from alignment at C-australica_Contig_1046:7884..11133- (Chrysoparadoxa australica CS_1217)
CCAAAGAACAGGCAGCCGGGTCATGCTGGCATCTGCAGGGGGTGATAGGA
AGAAAGATGTCTTGCAAAGAGGAGGGAGTAAGAGGGATCTTGTGTCAAGA
GGGAGTAGCAAAAGAGATCTTTCAAGTGGAGGCAGCAAGCGTAATCTTCA
ATCAGCAGGCGGGGCCAGCAGCAAGCATAGGCACGAGGAGTCAACCAGTG
CCACTGGCAAGACTACTGAGGATGGGCACGGCAAGCAGCAGCGACCAGCT
CCATTAAGGGGGTTAAAGGGCAAGAAGAAGAAGAAGCTGCCGGGAAAGGG
CCTGGTATCAGCGGAGCCACGAGATCCAGCCCAGGAGAAGGTAAAGAAGT
AGCCAGCATCATCTTGCTCGGATAAGAATACAGAGGAATGGAGATGATGC
ATGGTCTGGTGAGTGATAGGCGTAGCAGATATATGTGGGGAGGAGTGCAG
CGAATGCATGCATGTGTGAATGAATAAGTGAATAAATGAATGAAGGCTTA
GCAAACTTTTGTAATACTACTAACCCATTCATTCTCATTCAGCTCAAGCT
AACGCCAATGGAGAGGTTTAATCAATTAAGGGAAGAGCTTCTCCTCGCAG
ATCTCACTACTCCCAGTGATAACCGAATGGTAGGGAAACCTAACTCTAAT
CATGTAGTGTAGAGACAAACCCATCTAGCCTCTTGCTTCCCCATCAAGCC
AAGAGCTGTTTTAATCCAACCACTTCCAGCAGGTTAAGAGGAGGTTCAGT
ATGACACTTGGTACGACCAGCCAAGTTTTAGCTGAAAGAGTATGTGTTGG
AGGTGCAAGAGGGCACGAGCAGAAGCATACAGTCCATTCACACCTTGACT
GCACAAGTGCTGGGGACATCTTCTATAGCAATGGAGATGGGTCATTTGGG
AGTCTGCATGCTTCTGGTGGCAGACAGATAAACAGGAAGAGGAAGAGGAA
GAGCGAGGGTGATGCGGAGAGAGCTGCTGAGAAAAGAGAGAGGCAACTTG
CTACTGGTACGGTATTTGCTTGCTCTACTGTGCTCTAATGTGCTCTAATC
ATCCATAAACAGCCTCAAGCTGAGCCTTTTGCCTTAGTGGCTCACCCTAT
CCAAATGACTTATGCAATGAACCCTAGTGCCAAGCTCTAAGATTGGATAG
GCTGACCCAAGTAACATCCCGTCCTGGCTGATGCCACCACCATTATTCGC
TATCCCTCATGCACATCATATTGTATTGATTACCATCATCTTTATCGCTG
GCACTTCAGAACTAACTGGTAGCACTCAAACCTATGCATGTGGTTTCAGG
TGCTCCCTTGGTAGTTCAAATGCAACGAGTCTGGAAGATGGTCCCATCCA
GCCGAGATACAAGGCCACGGTGGCTAAAAGAATATGAAGATGGTGATGGG
GCCTAATCAATCATCATGCTTTTGCTACCTACTGTTGAACGTTTTTGCTG
CTCAGCGCTAGGCTTCACCAAATCTTATTCAGACCCTGATACCCTAGTAC
CCTAATCTCAATACAGGGACTATTCAGTATAAGTTAGAGTTCTCCAACAG
TAGTGAAAAGGAAGTTCACTTTGGTGCACCTATGCCCTGGCATATCCTGG
AACAGGTAGTACATAGCAAGCATTTACCTGAGTGATGCAGTGGCTGGTTT
AGATCGCTCCTGCAACCCTGTAACCTTAAGCACTAAACTAGTACCTGTTT
GCTGACTTTTCTCTTGGCTTGTTACTTGACTTTCTCCCTCCGTGCTGCAG
TATGTTGCTGACCAAGCTCCAACACATAGGTACTCCGTGCTGAGGTATGA
AACCACAAGAAATCACATGACGAAATATTTGTCACATTCTAGCACTACAG
CTCTCAATCCTTGTGCTCTGATAATGCCAGCATTGGTACTGCCTGTCTTC
ATCAGACCTTATCAGAGGGTGGACTTCTTCAAGGCATTATCAATCCCAGA
TTTCCTTCAGATTGCATTTGCTGAGATTGTGAAGCAATTCCCAGAGACCA
TAGGTTATTGCACGTAGCACAGAACATCTTGAGCACGTGAATGAAGTGTG
ATGCCTACTTTTGTGCTGGTGTATCTCGAAACCACATGTGGATCTCATTT
GCCATACATCAATTCTTTCTGAACGCCAAACTCCTAAGCAGCGCCTCACG
GAACGGCTTGGCAGTAGCGTTTCACATTTTATTGTTTCACAGTGCAGTGC
TTCACAGCATATTATTTCACAGGCTCACTCTCTCTCTCTCTCTCTCTCTC
TCTCTCAGGGGGCGGTCTAGATTCGAGGAAGTGGCACAAGCTAATGGCAA
GCTTGGGCATCTTTGATGATATTAGGGACTCTCAACGGTGGGGGAGTACC
AACAGACTCATAGTTGACGCTAATCCCCCGTTGTACAAGCTAGTTACAGC
ATTCTAATGACTTTCCTTTTTCCTGTACTGGCTTTACTGCCTTAGCCATA
TGGAGCTAGACAAAATATATAGGACACGGACTAGGCAGTACAAGCATGAA
GTCCATAAGTACCACCACGAACTGGCTAAATTGGAAAGTGCAGCAGCCCA
TCAGGCTGGGAACCTGAAAGCTCCGGAGCAAGGATCCAAAACAACCAGGC
CAAGTTATGACGGATCTCACCTGGCCAAGGTACGGCGCTGACACCATGCA
GTAAAGCTTTTTCAATCATGATACAACAAAAGAGCTTTGCAAGGGCACCA
AGCATCATGGAGCTACTTTCCTGATGTAGCTTTTGTGTACATGTTAGCCA
ACAGCTATGATCAGCGTTGCGATGAATTGCTGACAACCAACTTCACTTCT
CCCTCGCAGGCAATGAAACACGTGCCGGATCAAGACCTGCGCATGGATAG
CAAAAGCTTCATTGACGCATTGACATCGGTATTGCAAAAGCTTCGTTGAT
GTATTGACATGGGTATCATCCTTTGCCTTTCATCAACCTTTCTTTCCTTC
CATCTTCCTTTTCGCTCAATTCAGCTCCTCACTGGGTAACTTCCCTTCTC
CCTCTTGCCTACTTAAACTTCTAGCCCTACGCCACTCTTACAGGTGGCTG
AGATGAGATGGCCAGATCAACCTCAGGCACAGGCCATGCACGAACTAGTT
TTTGGGTAAAGCACTGCTTCATAACCCTGCCTCTCAAATCCTAGCCGTAA
CTCGCAACCAATGCCCTGTTCTACTCCATTCTACTCCAGGCATTTGCTTG
TGCACAACGATTTCTTATCAGTCAAGTTAAGCGCTTGGAGGTATTTATAG
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Coding sequence (CDS) from alignment at C-australica_Contig_1046:7884..11133-

>mRNA_C-australica_Contig_1046.2.1 ID=mRNA_C-australica_Contig_1046.2.1|Name=mRNA_C-australica_Contig_1046.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1458bp|location=Sequence derived from alignment at C-australica_Contig_1046:7884..11133- (Chrysoparadoxa australica CS_1217)
ATGCTGGCATCTGCAGGGGGTGATAGGAAGAAAGATGTCTTGCAAAGAGG
AGGGAGTAAGAGGGATCTTGTGTCAAGAGGGAGTAGCAAAAGAGATCTTT
CAAGTGGAGGCAGCAAGCGTAATCTTCAATCAGCAGGCGGGGCCAGCAGC
AAGCATAGGCACGAGGAGTCAACCAGTGCCACTGGCAAGACTACTGAGGA
TGGGCACGGCAAGCAGCAGCGACCAGCTCCATTAAGGGGGTTAAAGGGCA
AGAAGAAGAAGAAGCTGCCGGGAAAGGGCCTGGTATCAGCGGAGCCACGA
GATCCAGCCCAGGAGAAGCTCAAGCTAACGCCAATGGAGAGGTTTAATCA
ATTAAGGGAAGAGCTTCTCCTCGCAGATCTCACTACTCCCAGTGATAACC
GAATGGTTAAGAGGAGGTTCAGTATGACACTTGGTACGACCAGCCAAGTT
TTAGCTGAAAGAGTATGTGTTGGAGGTGCAAGAGGGCACGAGCAGAAGCA
TACAGTCCATTCACACCTTGACTGCACAAGTGCTGGGGACATCTTCTATA
GCAATGGAGATGGGTCATTTGGGAGTCTGCATGCTTCTGGTGGCAGACAG
ATAAACAGGAAGAGGAAGAGGAAGAGCGAGGGTGATGCGGAGAGAGCTGC
TGAGAAAAGAGAGAGGCAACTTGCTACTGGTGCTCCCTTGGTAGTTCAAA
TGCAACGAGTCTGGAAGATGGTCCCATCCAGCCGAGATACAAGGCCACGG
TGGCTAAAAGAATATGAAGATGGGACTATTCAGTATAAGTTAGAGTTCTC
CAACAGTAGTGAAAAGGAAGTTCACTTTGGTGCACCTATGCCCTGGCATA
TCCTGGAACAGTATGTTGCTGACCAAGCTCCAACACATAGGTACTCCGTG
CTGAGACCTTATCAGAGGGTGGACTTCTTCAAGGCATTATCAATCCCAGA
TTTCCTTCAGATTGCATTTGCTGAGATTGTGAAGCAATTCCCAGAGACCA
TAGGGGGCGGTCTAGATTCGAGGAAGTGGCACAAGCTAATGGCAAGCTTG
GGCATCTTTGATGATATTAGGGACTCTCAACGCCATATGGAGCTAGACAA
AATATATAGGACACGGACTAGGCAGTACAAGCATGAAGTCCATAAGTACC
ACCACGAACTGGCTAAATTGGAAAGTGCAGCAGCCCATCAGGCTGGGAAC
CTGAAAGCTCCGGAGCAAGGATCCAAAACAACCAGGCCAAGTTATGACGG
ATCTCACCTGGCCAAGGCAATGAAACACGTGCCGGATCAAGACCTGCGCA
TGGATAGCAAAAGCTTCATTGACGCATTGACATCGGTGGCTGAGATGAGA
TGGCCAGATCAACCTCAGGCACAGGCCATGCACGAACTAGTTTTTGGGCA
TTTGCTTGTGCACAACGATTTCTTATCAGTCAAGTTAAGCGCTTGGAGGT
ATTTATAG
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