mRNA_C-australica_Contig_10425.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10425.1.1
Unique NamemRNA_C-australica_Contig_10425.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10425.1.1 vs. uniprot
Match: UPI00039FD444 (PAS domain S-box protein n=1 Tax=Balneola vulgaris TaxID=287535 RepID=UPI00039FD444)

HSP 1 Score: 167 bits (424), Expect = 1.980e-47
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1
Query:   10 GAIGISLKQQDGHIRLQVVDHGVGLPVNYDFKKPKTLGLRLVSVLIKQLQADMVVANSKGVDYNIQYKIQDIKTQRFIQKPKLALN 267
            GAIGISLKQQDGHI LQVVDHGVGLPVNYDFKKPKTLGLRLVSVLIKQLQADMVVANSKGVDYNI YKIQDIKTQRFIQKPKLALN
Sbjct:  488 GAIGISLKQQDGHILLQVVDHGVGLPVNYDFKKPKTLGLRLVSVLIKQLQADMVVANSKGVDYNIHYKIQDIKTQRFIQKPKLALN 573          
BLAST of mRNA_C-australica_Contig_10425.1.1 vs. uniprot
Match: A0A1G3KJR6_9SPIR (Uncharacterized protein n=1 Tax=Spirochaetes bacterium GWB1_27_13 TaxID=1802173 RepID=A0A1G3KJR6_9SPIR)

HSP 1 Score: 68.6 bits (166), Expect = 1.450e-11
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   10 GAIGISLKQQDGHIRLQVVDHGVGLPVNYDFKKPKTLGLRLVSVLIKQLQADMVVANSKGVDYNIQY 210
            G I +SL Q +  I L + D+G+GLP+N D +KPKTLGL L+ +L  QL+  M + N  GV Y I++
Sbjct:  320 GEINLSLSQIENKIELSISDNGIGLPINIDIEKPKTLGLTLIKLLTYQLRGKMEIKNQDGVYYKIEF 386          
BLAST of mRNA_C-australica_Contig_10425.1.1 vs. uniprot
Match: A0A371QNG9_9BACT (PAS domain S-box protein n=2 Tax=Rhodohalobacter sp. SW132 TaxID=2293433 RepID=A0A371QNG9_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 1.040e-10
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = 1
Query:   10 GAIGISLKQQDGHIRLQVVDHGVGLPVNYDFKKPKTLGLRLVSVLIKQLQADMVVANSKGVDYNIQYKIQDIK 228
            G I ++L+++DG + L V D+GVGL    +F+ P TLGL+L+S L+KQL  D+   +S+G  + + ++ + IK
Sbjct:  559 GKIKVTLREKDGFVHLSVQDNGVGLDPGVNFENPATLGLKLISHLVKQLYGDIKADSSEGTTFTVSFRKEQIK 631          
BLAST of mRNA_C-australica_Contig_10425.1.1 vs. uniprot
Match: K6SZM9_9EURY (PAS domain S-box n=1 Tax=Methanobacterium sp. Maddingley MBC34 TaxID=1220534 RepID=K6SZM9_9EURY)

HSP 1 Score: 64.3 bits (155), Expect = 4.990e-10
Identity = 26/68 (38.24%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   10 GAIGISLKQQDGHIRLQVVDHGVGLPVNYDFKKPKTLGLRLVSVLIKQLQADMVVANSKGVDYNIQYK 213
            G + +SLK+  G   + ++D+G+G+P ++DFK P++LGL+LV+ L KQL  ++ +  S G  + I++K
Sbjct:  714 GEVYVSLKEDQGEYEMVIIDNGIGIPPDFDFKHPESLGLQLVNNLTKQLDGEIKLDRSHGTKFTIKFK 781          
BLAST of mRNA_C-australica_Contig_10425.1.1 vs. uniprot
Match: A0A842M7V9_9EURY (PAS domain S-box protein n=2 Tax=Methanobacteriales TaxID=2158 RepID=A0A842M7V9_9EURY)

HSP 1 Score: 62.4 bits (150), Expect = 2.210e-9
Identity = 26/69 (37.68%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   10 GAIGISLKQQDGHIRLQVVDHGVGLPVNYDFKKPKTLGLRLVSVLIKQLQADMVVANSKGVDYNIQYKI 216
            G + I L+ +DG I L V D G+G P N DFK   TLGL+LV++L+ Q+  ++++   +G  + I + +
Sbjct:  325 GTVTIRLESKDGEIHLIVADDGIGFPENLDFKNTDTLGLKLVNILVHQIDGEIILKRDRGTIFEIVFNL 393          
BLAST of mRNA_C-australica_Contig_10425.1.1 vs. uniprot
Match: A0A7C5M4H0_9BACT (GAF domain-containing protein n=1 Tax=candidate division WOR-3 bacterium TaxID=2052148 RepID=A0A7C5M4H0_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 2.340e-9
Identity = 30/65 (46.15%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   10 GAIGISLKQQDGHIRLQVVDHGVGLPVNYDFKKPKTLGLRLVSVLIKQLQADMVVANSKGVDYNI 204
            G I I+L  QD  I L V D+G+GLP + DF+ PKTLGL+LV  L+KQL+A + +  ++G ++ +
Sbjct:  545 GEICINLYPQDDKIILVVNDNGIGLPKDLDFQNPKTLGLKLVMTLVKQLRATIDLDRTRGTEFKV 609          
BLAST of mRNA_C-australica_Contig_10425.1.1 vs. uniprot
Match: A0A7R9NAB8_9EURY (Serine/threonine-protein kinase PknD n=5 Tax=cellular organisms TaxID=131567 RepID=A0A7R9NAB8_9EURY)

HSP 1 Score: 62.0 bits (149), Expect = 3.330e-9
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   10 GAIGISLKQQDGHIRLQVVDHGVGLPVNYDFKKPKTLGLRLVSVLIKQLQADMVVANSKGVDYNI 204
            G I I L  QD  I L V D+G+GLP + DF+ PKTLGL+LV  L+KQL+A + +  ++G ++ +
Sbjct: 1607 GEICIDLYPQDDKIILVVNDNGIGLPKDLDFQNPKTLGLKLVMTLVKQLRATIDLDRTRGTEFKV 1671          
BLAST of mRNA_C-australica_Contig_10425.1.1 vs. uniprot
Match: A0A139X8N4_9CYAN (Uncharacterized protein n=1 Tax=Scytonema hofmannii PCC 7110 TaxID=128403 RepID=A0A139X8N4_9CYAN)

HSP 1 Score: 61.2 bits (147), Expect = 5.970e-9
Identity = 28/68 (41.18%), Postives = 45/68 (66.18%), Query Frame = 1
Query:   10 GAIGISLKQQDGHIRLQVVDHGVGLPVNYDFKKPKTLGLRLVSVLIKQLQADMVVANSKGVDYNIQYK 213
            G I + L + + H+ L V D+GVGLPV +D KK KTLG+ L+  L+KQL+  + + + +G ++ I +K
Sbjct:  553 GEIIVKLYEDEHHLILIVRDNGVGLPVEFDKKKTKTLGINLIQGLVKQLRGSIEINSQQGTEFKITFK 620          
BLAST of mRNA_C-australica_Contig_10425.1.1 vs. uniprot
Match: A0A1Z4GS69_9CYAN (Signal transduction histidine kinase n=2 Tax=Anabaenopsis circularis TaxID=109266 RepID=A0A1Z4GS69_9CYAN)

HSP 1 Score: 59.7 bits (143), Expect = 9.790e-9
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   10 GAIGISLKQQDGHIRLQVVDHGVGLPVNYDFKKPKTLGLRLVSVLIKQLQADMVVANSKGVDYNI 204
            G I ISL Q+D  + L + D+G GLP ++D KK KTLG+ LVS L+KQL+  + + +  GV++ I
Sbjct:  153 GEIQISLTQKDDIVTLIICDNGRGLPHDFDIKKRKTLGITLVSGLVKQLRGILEINSQLGVEFKI 217          
BLAST of mRNA_C-australica_Contig_10425.1.1 vs. uniprot
Match: Q3A7T5_SYNC1 (Sensor histidine kinase, PAS, PAS, PAS, GAF, Hist_Kin_Sens, PAS and PAS domain-containing n=2 Tax=Syntrophotalea carbinolica TaxID=19 RepID=Q3A7T5_SYNC1)

HSP 1 Score: 60.5 bits (145), Expect = 1.150e-8
Identity = 26/68 (38.24%), Postives = 42/68 (61.76%), Query Frame = 1
Query:   10 GAIGISLKQQDGHIRLQVVDHGVGLPVNYDFKKPKTLGLRLVSVLIKQLQADMVVANSKGVDYNIQYK 213
            G + ISL    G   L V D+GVG+P ++D+  PKTLGL+LV+ L+ QL   + V +  G  + ++++
Sbjct: 1171 GQVAISLHSHAGQFELTVADNGVGVPADFDYCSPKTLGLQLVTALVNQLNGTLEVESRSGTCFRVRFE 1238          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10425.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00039FD4441.980e-4797.67PAS domain S-box protein n=1 Tax=Balneola vulgaris... [more]
A0A1G3KJR6_9SPIR1.450e-1146.27Uncharacterized protein n=1 Tax=Spirochaetes bacte... [more]
A0A371QNG9_9BACT1.040e-1039.73PAS domain S-box protein n=2 Tax=Rhodohalobacter s... [more]
K6SZM9_9EURY4.990e-1038.24PAS domain S-box n=1 Tax=Methanobacterium sp. Madd... [more]
A0A842M7V9_9EURY2.210e-937.68PAS domain S-box protein n=2 Tax=Methanobacteriale... [more]
A0A7C5M4H0_9BACT2.340e-946.15GAF domain-containing protein n=1 Tax=candidate di... [more]
A0A7R9NAB8_9EURY3.330e-946.15Serine/threonine-protein kinase PknD n=5 Tax=cellu... [more]
A0A139X8N4_9CYAN5.970e-941.18Uncharacterized protein n=1 Tax=Scytonema hofmanni... [more]
A0A1Z4GS69_9CYAN9.790e-946.15Signal transduction histidine kinase n=2 Tax=Anaba... [more]
Q3A7T5_SYNC11.150e-838.24Sensor histidine kinase, PAS, PAS, PAS, GAF, Hist_... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10425contigC-australica_Contig_10425:518..787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1121104.AQXH01000003_gene397
PFAMsHATPase_c,HATPase_c_2,HisKA_2,PAS,PAS_3,PAS_9
Model size270
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.67e-48
EggNOG OGsCOG3850@1|root,COG3920@1|root,COG3850@2|Bacteria,COG3920@2|Bacteria,4NINT@976|Bacteroidetes,1IT68@117747|Sphingobacteriia
DescriptionPFAM histidine kinase
Cds size270
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586779.6558208-CDS-C-australica_Contig_10425:517..7871682586779.6558208-CDS-C-australica_Contig_10425:517..787Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10425 518..787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10425.1.1prot_C-australica_Contig_10425.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10425 518..787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10425.1.1

>prot_C-australica_Contig_10425.1.1 ID=prot_C-australica_Contig_10425.1.1|Name=mRNA_C-australica_Contig_10425.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=90bp
DCIGAIGISLKQQDGHIRLQVVDHGVGLPVNYDFKKPKTLGLRLVSVLIK
QLQADMVVANSKGVDYNIQYKIQDIKTQRFIQKPKLALN*
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mRNA from alignment at C-australica_Contig_10425:518..787-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10425.1.1 ID=mRNA_C-australica_Contig_10425.1.1|Name=mRNA_C-australica_Contig_10425.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=270bp|location=Sequence derived from alignment at C-australica_Contig_10425:518..787- (Chrysoparadoxa australica CS_1217)
GACTGTATAGGAGCTATTGGTATTTCTTTAAAGCAACAAGATGGGCATAT CCGCTTACAGGTGGTAGATCATGGAGTAGGCTTACCCGTTAATTATGATT TTAAAAAACCTAAAACGCTTGGCCTTCGCCTGGTGAGCGTATTGATCAAG CAGCTTCAAGCTGATATGGTAGTGGCGAATAGTAAAGGAGTTGATTACAA CATTCAGTACAAGATTCAGGATATAAAAACTCAACGCTTTATTCAAAAGC CAAAGCTTGCACTCAACTGA
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Coding sequence (CDS) from alignment at C-australica_Contig_10425:518..787-

>mRNA_C-australica_Contig_10425.1.1 ID=mRNA_C-australica_Contig_10425.1.1|Name=mRNA_C-australica_Contig_10425.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=270bp|location=Sequence derived from alignment at C-australica_Contig_10425:518..787- (Chrysoparadoxa australica CS_1217)
GACTGTATAGGAGCTATTGGTATTTCTTTAAAGCAACAAGATGGGCATAT
CCGCTTACAGGTGGTAGATCATGGAGTAGGCTTACCCGTTAATTATGATT
TTAAAAAACCTAAAACGCTTGGCCTTCGCCTGGTGAGCGTATTGATCAAG
CAGCTTCAAGCTGATATGGTAGTGGCGAATAGTAAAGGAGTTGATTACAA
CATTCAGTACAAGATTCAGGATATAAAAACTCAACGCTTTATTCAAAAGC
CAAAGCTTGCACTCAACTGA
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