mRNA_C-australica_Contig_1042.5.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1042.5.1
Unique NamemRNA_C-australica_Contig_1042.5.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1042.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1042contigC-australica_Contig_1042:8440..8797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size281
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586779.29257-CDS-C-australica_Contig_1042:8439..85601682586779.29257-CDS-C-australica_Contig_1042:8439..8560Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1042 8440..8560 -
1682586779.302151-CDS-C-australica_Contig_1042:8639..87971682586779.302151-CDS-C-australica_Contig_1042:8639..8797Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1042 8640..8797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1042.5.1prot_C-australica_Contig_1042.5.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1042 8440..8797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1042.5.1

>prot_C-australica_Contig_1042.5.1 ID=prot_C-australica_Contig_1042.5.1|Name=mRNA_C-australica_Contig_1042.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=93bp
MAEDVATWRAKTTVLNVIRELVYPPEEGLVESVLAISSVKSAETVRAWHH
EWSVHGHIEADQRGKHKRIELLDDEQLLHEFLKWMKAEEHVSV
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mRNA from alignment at C-australica_Contig_1042:8440..8797-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1042.5.1 ID=mRNA_C-australica_Contig_1042.5.1|Name=mRNA_C-australica_Contig_1042.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=358bp|location=Sequence derived from alignment at C-australica_Contig_1042:8440..8797- (Chrysoparadoxa australica CS_1217)
ATGGCTGAAGATGTTGCTACATGGCGGGCAAAGACCACGGTGTTGAATGT
GATAAGGGAGCTTGTGTACCCGCCTGAGGAGGGCCTCGTGGAATCAGTGC
TAGCCATTTCAAGCGTGAAAAGTGCTGAAACGGTGCGAGCGTGGCATCAT
GAGTGGAGGTGAGGCATAACCTTTGTCCCTACTATTGCTATTCTCTGACT
TGCAAAGGCATGCACTCCTGGCACTCCTGCTTACCAGTGTGCACGGCCAC
ATTGAGGCGGATCAGCGTGGGAAGCACAAGCGAATAGAGCTGCTCGATGA
CGAGCAGCTCCTTCACGAGTTCCTGAAATGGATGAAGGCAGAGGAGCACG
TGTCCGTG
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Coding sequence (CDS) from alignment at C-australica_Contig_1042:8440..8797-

>mRNA_C-australica_Contig_1042.5.1 ID=mRNA_C-australica_Contig_1042.5.1|Name=mRNA_C-australica_Contig_1042.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=279bp|location=Sequence derived from alignment at C-australica_Contig_1042:8440..8797- (Chrysoparadoxa australica CS_1217)
ATGGCTGAAGATGTTGCTACATGGCGGGCAAAGACCACGGTGTTGAATGT
GATAAGGGAGCTTGTGTACCCGCCTGAGGAGGGCCTCGTGGAATCAGTGC
TAGCCATTTCAAGCGTGAAAAGTGCTGAAACGGTGCGAGCGTGGCATCAT
GAGTGGAGTGTGCACGGCCACATTGAGGCGGATCAGCGTGGGAAGCACAA
GCGAATAGAGCTGCTCGATGACGAGCAGCTCCTTCACGAGTTCCTGAAAT
GGATGAAGGCAGAGGAGCACGTGTCCGTG
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