mRNA_C-australica_Contig_104.12.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_104.12.1
Unique NamemRNA_C-australica_Contig_104.12.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_104.12.1 vs. uniprot
Match: D8LMJ3_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ3_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 3.240e-14
Identity = 41/85 (48.24%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:  295 ENARGSRKRDLDHLEFSKVTERAQASRQIFESARIQEAVNEEWVHGGCKRKAIRLLILYLLYILVFSLSAVFNSGQNRPHGFFIT 549
            E A  +R+R    L + +  +R  A R IF SAR+QEAV+EEW+ GG + +A+R+L+LYL+Y++VF+L +V NSG+N PHG+ +T
Sbjct:  481 EGAEDARQR----LVYQQSKQRYHAGRSIFSSARVQEAVHEEWIQGGHRIRALRVLLLYLVYLVVFTLCSVLNSGRNMPHGYHLT 561
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_104.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMJ3_ECTSI3.240e-1448.24Ankyrin repeat domain protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_104contigC-australica_Contig_104:42746..45403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMJ3
PFAMsAnk_2,Ank_3,Ank_5,PID,PKD_channel,SAM_1
Model size966
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00901,ko:K21413,ko:K21952
KEGG ReactionR02240
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515
Exons12
Evalue2.38e-24
EggNOG OGsCOG0666@1|root,KOG3599@1|root,KOG0507@2759|Eukaryota,KOG3599@2759|Eukaryota
EC2.7.1.107
Descriptiondetection of mechanical stimulus
Cds size966
COG categoryE
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_104.12.1prot_C-australica_Contig_104.12.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_104 42746..45403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586777.2345421-CDS-C-australica_Contig_104:42745..427961682586777.2345421-CDS-C-australica_Contig_104:42745..42796Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 42746..42796 +
1682586777.2504094-CDS-C-australica_Contig_104:42922..429911682586777.2504094-CDS-C-australica_Contig_104:42922..42991Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 42923..42991 +
1682586777.2658741-CDS-C-australica_Contig_104:43147..432151682586777.2658741-CDS-C-australica_Contig_104:43147..43215Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 43148..43215 +
1682586777.2754388-CDS-C-australica_Contig_104:43403..435631682586777.2754388-CDS-C-australica_Contig_104:43403..43563Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 43404..43563 +
1682586777.2845843-CDS-C-australica_Contig_104:43665..437341682586777.2845843-CDS-C-australica_Contig_104:43665..43734Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 43666..43734 +
1682586777.2939625-CDS-C-australica_Contig_104:43913..439821682586777.2939625-CDS-C-australica_Contig_104:43913..43982Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 43914..43982 +
1682586777.3021793-CDS-C-australica_Contig_104:44179..442681682586777.3021793-CDS-C-australica_Contig_104:44179..44268Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 44180..44268 +
1682586777.310473-CDS-C-australica_Contig_104:44447..445301682586777.310473-CDS-C-australica_Contig_104:44447..44530Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 44448..44530 +
1682586777.3193357-CDS-C-australica_Contig_104:44690..447681682586777.3193357-CDS-C-australica_Contig_104:44690..44768Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 44691..44768 +
1682586777.3296497-CDS-C-australica_Contig_104:44873..449291682586777.3296497-CDS-C-australica_Contig_104:44873..44929Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 44874..44929 +
1682586777.3410115-CDS-C-australica_Contig_104:45141..452351682586777.3410115-CDS-C-australica_Contig_104:45141..45235Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 45142..45235 +
1682586777.349327-CDS-C-australica_Contig_104:45323..454031682586777.349327-CDS-C-australica_Contig_104:45323..45403Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 45324..45403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_104.12.1

>prot_C-australica_Contig_104.12.1 ID=prot_C-australica_Contig_104.12.1|Name=mRNA_C-australica_Contig_104.12.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=322bp
TKEGLDIIKEGEEEVVQVLLRNGADLSNLDKSANKPIDFQAYFYERKTEI
ASAVDDFLCYKSRAADYMVRSLFKFPYLLIRWLQGQRRGRYITVAVAPEN
ARGSRKRDLDHLEFSKVTERAQASRQIFESARIQEAVNEEWVHGGCKRKA
IRLLILYLLYILVFSLSAVFNSGQNRPHGFFITESLRQSLIKSPYSREDS
PNPTFTDIEAPADFWLWAKGPLYSALYASSADTAWYDGSELKPQGGGVFV
NGFTRLLGTVRISQWRTFDTSCTIWPPMEDVVSYCFADFCTANHLGTMCF
GSTDDKSAFGPGLKFSITENAH
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mRNA from alignment at C-australica_Contig_104:42746..45403+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_104.12.1 ID=mRNA_C-australica_Contig_104.12.1|Name=mRNA_C-australica_Contig_104.12.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2658bp|location=Sequence derived from alignment at C-australica_Contig_104:42746..45403+ (Chrysoparadoxa australica CS_1217)
ACGAAAGAAGGTTTGGATATAATAAAGGAGGGAGAGGAGGAAGTAGTACA
GGTAACCTCGAAGCAAAGCTACGCAATATGTCGCTACAGCTACTCATTTT
CTAACGTAACAAGGCAACCATTTTAAGCCTGGCCTCCAACCCAGCTTAAG
GTATTATTGCTGCTGTTGATTTGACAGGTGTTGCTGAGAAACGGAGCTGA
TCTAAGTAACTTGGATAAGAGTGCAAACAAACCTATTGACTTTCAGGTGG
GTACGCATACCATCCTGTTGCAGCGCTCATACAGGACAACTCTTTGATTG
CATGGTAGCTTGCGTAAGCCTTAACCGGCAGTTGCAGATCCCTTGGCACT
GACAACTGATAACTGGCTTCCCTGATGACCGATGACCGATGACTGATGAC
AGGCCTACTTCTACGAGAGAAAGACGGAGATAGCTTCCGCAGTCGATGAC
TTCTTGTGTTACAAGAGCAGGTATGGCTCTGTAAGAAGACCTAACCCTAA
GGCTCAAGGGAGAGATTGCCAGAGCAATAACACTGCAGTGTTTGGAGCTA
AGCTAAACCTGCATGGCTACCTCTTGGACCCTGAGCTTGCTTCGGGGTAG
ATTCGTTCTAATTGCTGCACATGTGTTTGGTTACATCACTACCGCACACA
TCCCACAGGGCAGCAGATTATATGGTGCGGTCTCTATTTAAGTTCCCATA
CCTTTTGATACGGTGGTTACAAGGTCAGCGGAGGGGCAGGTACATCACTG
TTGCAGTTGCACCAGAAAATGCCCGTGGCTCAAGAAAGAGAGACTTGGAT
CACCTGGAGTTTTCCAAAGTAAGGCTACCCTGGAAGGCGAGGAGACTGTT
GTCCTGCAATGCCAGAGACCCTGACTTCTTCCTCTTTTTTTCCATTTCCC
CCTAACTAAAACCCCAATAGGTTACAGAGAGAGCTCAAGCTAGCAGGCAA
ATTTTTGAGTCTGCTCGTATACAAGAAGCTGTAAATGAGGTAGAATGGCC
TGCAGTATCTAACCACTTTTCGCTTAACTACATTGTGGAAGCATTTGAGC
ATGAGCTGCATTAGTTTGCAATTTGAGCTGCATTAGCTTGCAATAAGCCT
TTCGGAACCGACTCTATGCTGTTTATTTTATGCTTGCATCCATCTTATCT
TCTCTCATCGTTTCCCAGGAATGGGTACATGGTGGATGCAAGCGGAAGGC
CATCAGGCTACTCATACTGTATTTGCTGTACATCTTGGTATACGGCCACT
ACATGACTAGATCATAACAGCATCACACCCCCTACCTACCATCAGTGTAG
GACTGACAACTGGCTTTATTTACTGGTTTGTCTTTGCCTTGTGTTCTCTG
TATCCACTAGATTCACTGTATTTTTGTTATTCCTATTGGTGCGATATGCA
CGGTCATCATTCTTTTCTCTTCTTCCCTCTCCAGGTATTCAGCCTGAGTG
CAGTGTTTAATAGCGGCCAGAATAGGCCTCACGGCTTCTTTATTACAGAA
TCACTAAGGCAGAGCTTGATCAAGTAAGTGTATGAGCTCCCCACTGTGTG
TTTGCGCATTTCATCTCATAATCACTCACTTTCTTTGCATCGGCAACAAC
CTACTTGCTACCTATTGGAGTTGCACTTGATGAATTGACGAGGTCATGGA
CTGAGTAACTGACACTGACTGACTGGGTGACTGACACTAACTGCCATATC
AGGTCACCGTATTCTCGGGAGGACAGCCCTAACCCAACATTTACTGATAT
CGAGGCACCAGCTGATTTCTGGCTATGGGCTAAGGGTATGTAGCCTTTGC
CATTGCTGCCTTTACACTGCTTGAGCTTGAGCATCATTTGATGCCCCATG
TGACTCAGAGCTTGCCTCAGAGCTTGCCTCACAGTATGCCTCAGTGTGTA
GATGATTATGCTAGCTTTTGTTACATTTCCTTCCAACACCCTTAGGTCCA
CTTTATTCTGCTTTATATGCTTCAAGTGCTGACACGGCATGGTATGATGG
TAGTGAACTGAAACCACAAGGAGGTAAGCCAGTGTTAGATATACTTATAT
GAGAGGGAAGGAATGCAGGCAAAAGTTGCTCAAACCTTAAGCCTTACGTC
AATCAACATATAAAATTTGGCAACTAAGGGGGAGTATTTGTAAATGGCTT
CACAAGGCTACTTGGCACTGTGAGAATTAGCCAGGTATTGCATTTATTGC
TTAGGCTAGTACTCCATTCTCTTCACGCACCTTTAGAGCGACTAAGTACT
ATACCGAGTGACCCTGCAACCCTGCCACTGCTGTTGCCCATCACTTGAGT
TCATTTCAGTGTGCAGTTTGCAATCCTACACTCGGTCAACTTCCTTTCAC
GTCACTCCTCTTCTCTTCTCTGTCCTAACCTAACATTTCTTGACAGTGGC
GCACGTTTGATACCTCGTGCACTATATGGCCTCCAATGGAAGATGTAGTT
AGTTACTGTTTTGCTGACTTTTGCACGGCAAATCACCTTGGTGAGACATT
CACATTCACCCAGCTAACATATACCCGATGCCTTGATTGATGCTTGTGTC
TAATCTTTTGCTTCTCCCTACATTTTAGGGACTATGTGCTTTGGAAGCAC
GGATGATAAGAGCGCATTTGGTCCTGGGTTAAAGTTTTCAATAACAGAGA
ACGCGCAT
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Coding sequence (CDS) from alignment at C-australica_Contig_104:42746..45403+

>mRNA_C-australica_Contig_104.12.1 ID=mRNA_C-australica_Contig_104.12.1|Name=mRNA_C-australica_Contig_104.12.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=966bp|location=Sequence derived from alignment at C-australica_Contig_104:42746..45403+ (Chrysoparadoxa australica CS_1217)
ACGAAAGAAGGTTTGGATATAATAAAGGAGGGAGAGGAGGAAGTAGTACA
GGTGTTGCTGAGAAACGGAGCTGATCTAAGTAACTTGGATAAGAGTGCAA
ACAAACCTATTGACTTTCAGGCCTACTTCTACGAGAGAAAGACGGAGATA
GCTTCCGCAGTCGATGACTTCTTGTGTTACAAGAGCAGGGCAGCAGATTA
TATGGTGCGGTCTCTATTTAAGTTCCCATACCTTTTGATACGGTGGTTAC
AAGGTCAGCGGAGGGGCAGGTACATCACTGTTGCAGTTGCACCAGAAAAT
GCCCGTGGCTCAAGAAAGAGAGACTTGGATCACCTGGAGTTTTCCAAAGT
TACAGAGAGAGCTCAAGCTAGCAGGCAAATTTTTGAGTCTGCTCGTATAC
AAGAAGCTGTAAATGAGGAATGGGTACATGGTGGATGCAAGCGGAAGGCC
ATCAGGCTACTCATACTGTATTTGCTGTACATCTTGGTATTCAGCCTGAG
TGCAGTGTTTAATAGCGGCCAGAATAGGCCTCACGGCTTCTTTATTACAG
AATCACTAAGGCAGAGCTTGATCAAGTCACCGTATTCTCGGGAGGACAGC
CCTAACCCAACATTTACTGATATCGAGGCACCAGCTGATTTCTGGCTATG
GGCTAAGGGTCCACTTTATTCTGCTTTATATGCTTCAAGTGCTGACACGG
CATGGTATGATGGTAGTGAACTGAAACCACAAGGAGGGGGAGTATTTGTA
AATGGCTTCACAAGGCTACTTGGCACTGTGAGAATTAGCCAGTGGCGCAC
GTTTGATACCTCGTGCACTATATGGCCTCCAATGGAAGATGTAGTTAGTT
ACTGTTTTGCTGACTTTTGCACGGCAAATCACCTTGGGACTATGTGCTTT
GGAAGCACGGATGATAAGAGCGCATTTGGTCCTGGGTTAAAGTTTTCAAT
AACAGAGAACGCGCAT
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