mRNA_C-australica_Contig_10347.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10347.1.1
Unique NamemRNA_C-australica_Contig_10347.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10347.1.1 vs. uniprot
Match: A0A222E5E9_9RHOB (Uroporphyrinogen-III C-methyltransferase n=7 Tax=Rhodobacterales TaxID=204455 RepID=A0A222E5E9_9RHOB)

HSP 1 Score: 293 bits (751), Expect = 4.380e-99
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1 
Query:    1 MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSHVRPGADLIGVGKRAGRLSPKQHHVSQLLVEYAQEGGRIVRLKSGDSGLFGRLEEEQVALRAAGIEYEIIPGIPSAVAAAAACGIPLTRRLTARRVQFVTGHDATGE 453
            MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSHVRPGADLIGVGKRAGRLSPKQHHVSQLLVEYAQEGGRIVRLKSGDSGLFGRLEEEQVALRAAGIEYEIIPGIPSAVAAAAACGIPLTRRLTARRVQFVTGHDATGE
Sbjct:    1 MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSHVRPGADLIGVGKRAGRLSPKQHHVSQLLVEYAQEGGRIVRLKSGDSGLFGRLEEEQVALRAAGIEYEIIPGIPSAVAAAAACGIPLTRRLTARRVQFVTGHDATGE 151
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BLAST of mRNA_C-australica_Contig_10347.1.1 vs. uniprot
Match: A0A238K1Y2_9RHOB (Uroporphyrinogen-III C-methyltransferase n=6 Tax=Rhodobacterales TaxID=204455 RepID=A0A238K1Y2_9RHOB)

HSP 1 Score: 271 bits (692), Expect = 4.180e-90
Identity = 138/151 (91.39%), Postives = 143/151 (94.70%), Query Frame = 1 
Query:    1 MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSHVRPGADLIGVGKRAGRLSPKQHHVSQLLVEYAQEGGRIVRLKSGDSGLFGRLEEEQVALRAAGIEYEIIPGIPSAVAAAAACGIPLTRRLTARRVQFVTGHDATGE 453
            MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPIL+H RPGADLIGVGKRAGR SPKQHHVS LLV+YA+EGGRIVRLKSGD GLFGRLEEE VALR A I YEIIPG+PSAVAAAAACGIPLTRRLTARRVQFVTGHDA+GE
Sbjct:    1 MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILTHARPGADLIGVGKRAGRPSPKQHHVSHLLVDYAREGGRIVRLKSGDGGLFGRLEEELVALREASIPYEIIPGVPSAVAAAAACGIPLTRRLTARRVQFVTGHDASGE 151
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BLAST of mRNA_C-australica_Contig_10347.1.1 vs. uniprot
Match: A0A1X7BR40_9RHOB (Uroporphyrinogen-III C-methyltransferase n=1 Tax=Roseovarius aestuarii TaxID=475083 RepID=A0A1X7BR40_9RHOB)

HSP 1 Score: 269 bits (687), Expect = 2.040e-89
Identity = 137/150 (91.33%), Postives = 144/150 (96.00%), Query Frame = 1 
Query:    1 MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSHVRPGADLIGVGKRAGRLSPKQHHVSQLLVEYAQEGGRIVRLKSGDSGLFGRLEEEQVALRAAGIEYEIIPGIPSAVAAAAACGIPLTRRLTARRVQFVTGHDATG 450
            MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPIL+H RPGADL+GVGKRAGR SP+Q HVS+LLV+YAQEGGRIVRLKSGDSGLFGRLEEE VALR AGIEYEIIPG+PSAVAAAAACGIPLTRRLTARRVQFVTGH+A G
Sbjct:    1 MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILTHARPGADLVGVGKRAGRPSPRQDHVSRLLVDYAQEGGRIVRLKSGDSGLFGRLEEELVALRDAGIEYEIIPGVPSAVAAAAACGIPLTRRLTARRVQFVTGHNADG 150
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BLAST of mRNA_C-australica_Contig_10347.1.1 vs. uniprot
Match: X6L5P3_9RHOB (Uroporphyrinogen-III C-methyltransferase n=1 Tax=Rhodobacteraceae bacterium PD-2 TaxID=1169855 RepID=X6L5P3_9RHOB)

HSP 1 Score: 269 bits (687), Expect = 2.750e-89
Identity = 136/150 (90.67%), Postives = 143/150 (95.33%), Query Frame = 1 
Query:    1 MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSHVRPGADLIGVGKRAGRLSPKQHHVSQLLVEYAQEGGRIVRLKSGDSGLFGRLEEEQVALRAAGIEYEIIPGIPSAVAAAAACGIPLTRRLTARRVQFVTGHDATG 450
            M+GFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSH RPGADL+GVGKRAGR SPKQ HVS+LLV+YA EGGRIVRLKSGDSGLFGRLEEE VALRAAGI YEIIPG+PSA+ AAAACGIPLTRRLTARRVQFVTGHDA+G
Sbjct:    1 MTGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSHARPGADLVGVGKRAGRPSPKQDHVSRLLVDYASEGGRIVRLKSGDSGLFGRLEEELVALRAAGIPYEIIPGVPSAIGAAAACGIPLTRRLTARRVQFVTGHDASG 150
[Close]
BLAST of mRNA_C-australica_Contig_10347.1.1 vs. uniprot
Match: A0A1X6ZMA0_9RHOB (Uroporphyrinogen-III C-methyltransferase n=1 Tax=Roseivivax jejudonensis TaxID=1529041 RepID=A0A1X6ZMA0_9RHOB)

HSP 1 Score: 266 bits (679), Expect = 3.360e-88
Identity = 135/150 (90.00%), Postives = 141/150 (94.00%), Query Frame = 1 
Query:    1 MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSHVRPGADLIGVGKRAGRLSPKQHHVSQLLVEYAQEGGRIVRLKSGDSGLFGRLEEEQVALRAAGIEYEIIPGIPSAVAAAAACGIPLTRRLTARRVQFVTGHDATG 450
            MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSH RPGADL+GVGKRAGR SP+QHHVS+LLV+YA EGGRIVRLKSGD GLFGRLEEE VALR AGI YEI+PG+PSAVAAAAA GIPLTRRLTARRVQFVTGHDA G
Sbjct:    1 MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSHARPGADLVGVGKRAGRPSPRQHHVSRLLVDYAAEGGRIVRLKSGDGGLFGRLEEELVALREAGIGYEIVPGVPSAVAAAAAAGIPLTRRLTARRVQFVTGHDAAG 150
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BLAST of mRNA_C-australica_Contig_10347.1.1 vs. uniprot
Match: UPI001D0AC44B (uroporphyrinogen-III C-methyltransferase n=1 Tax=Roseobacter sp. H9 TaxID=2763262 RepID=UPI001D0AC44B)

HSP 1 Score: 265 bits (678), Expect = 4.770e-88
Identity = 133/151 (88.08%), Postives = 142/151 (94.04%), Query Frame = 1 
Query:    1 MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSHVRPGADLIGVGKRAGRLSPKQHHVSQLLVEYAQEGGRIVRLKSGDSGLFGRLEEEQVALRAAGIEYEIIPGIPSAVAAAAACGIPLTRRLTARRVQFVTGHDATGE 453
            MSGFVSFVGSGPGDP+LLTLKAVDRLKRADAVLFDDLSSGPIL H R GADL+GVGKRAG  SP+QHHVS+LLV+YAQ GGRIVRLKSGDSGLFGRLEEE VALR AGI+YEIIPG+PSA+AAAAACGIPLTRRLTARRVQFVTGHDA G+
Sbjct:    1 MSGFVSFVGSGPGDPDLLTLKAVDRLKRADAVLFDDLSSGPILKHARQGADLVGVGKRAGHPSPRQHHVSRLLVDYAQAGGRIVRLKSGDSGLFGRLEEELVALREAGIDYEIIPGVPSAIAAAAACGIPLTRRLTARRVQFVTGHDANGD 151
[Close]
BLAST of mRNA_C-australica_Contig_10347.1.1 vs. uniprot
Match: A0A8J8B9A2_9RHOB (Uroporphyrinogen-III C-methyltransferase n=1 Tax=Aestuariicoccus sp. KMU-90 TaxID=2827239 RepID=A0A8J8B9A2_9RHOB)

HSP 1 Score: 265 bits (677), Expect = 6.780e-88
Identity = 135/151 (89.40%), Postives = 143/151 (94.70%), Query Frame = 1 
Query:    1 MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSHVRPGADLIGVGKRAGRLSPKQHHVSQLLVEYAQEGGRIVRLKSGDSGLFGRLEEEQVALRAAGIEYEIIPGIPSAVAAAAACGIPLTRRLTARRVQFVTGHDATGE 453
            MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPIL+H RPGADL+GVGKRAGR SP+Q HVS+LLVEYAQ GGRIVRLKSGDSGLFGRLEEE VALRAAGI YEI+PG+PSAVAAAAA GIPLTRRLTARRVQFVTGHD +G+
Sbjct:    1 MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILAHARPGADLVGVGKRAGRPSPRQDHVSRLLVEYAQGGGRIVRLKSGDSGLFGRLEEELVALRAAGIPYEIVPGVPSAVAAAAAAGIPLTRRLTARRVQFVTGHDISGQ 151
[Close]
BLAST of mRNA_C-australica_Contig_10347.1.1 vs. uniprot
Match: Q161R2_ROSDO (Uroporphyrinogen-III C-methyltransferase n=3 Tax=Roseobacter TaxID=2433 RepID=Q161R2_ROSDO)

HSP 1 Score: 265 bits (677), Expect = 6.780e-88
Identity = 135/151 (89.40%), Postives = 142/151 (94.04%), Query Frame = 1 
Query:    1 MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSHVRPGADLIGVGKRAGRLSPKQHHVSQLLVEYAQEGGRIVRLKSGDSGLFGRLEEEQVALRAAGIEYEIIPGIPSAVAAAAACGIPLTRRLTARRVQFVTGHDATGE 453
            MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPIL+H R GADL+ VGKRAGR SP Q HVS+LLVEYA+ GGRIVRLKSGDSGLFGRLEEE VALRAAGIEYEIIPG+PSAVAAAAACGIPLTRR TARRVQFVTGHDA+G+
Sbjct:    1 MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILTHARQGADLVSVGKRAGRPSPNQQHVSRLLVEYAEAGGRIVRLKSGDSGLFGRLEEELVALRAAGIEYEIIPGVPSAVAAAAACGIPLTRRFTARRVQFVTGHDASGD 151
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BLAST of mRNA_C-australica_Contig_10347.1.1 vs. uniprot
Match: Q28N74_JANSC (Uroporphyrinogen-III C-methyltransferase n=1 Tax=Jannaschia sp. (strain CCS1) TaxID=290400 RepID=Q28N74_JANSC)

HSP 1 Score: 264 bits (675), Expect = 1.410e-87
Identity = 136/151 (90.07%), Postives = 143/151 (94.70%), Query Frame = 1 
Query:    1 MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSHVRPGADLIGVGKRAGRLSPKQHHVSQLLVEYAQEGGRIVRLKSGDSGLFGRLEEEQVALRAAGIEYEIIPGIPSAVAAAAACGIPLTRRLTARRVQFVTGHDATGE 453
            MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSH R GADL+GVGKRAGR SPKQ+HVS+LLV+YAQ G RIVRLKSGDSGLFGRLEEE VALRAAGI YEIIPG+PSA+AAAAA GIPLTRRLTARRVQFVTGHDA+GE
Sbjct:    1 MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSHARSGADLVGVGKRAGRPSPKQNHVSRLLVDYAQTGQRIVRLKSGDSGLFGRLEEELVALRAAGIPYEIIPGVPSAIAAAAAAGIPLTRRLTARRVQFVTGHDASGE 151
[Close]
BLAST of mRNA_C-australica_Contig_10347.1.1 vs. uniprot
Match: UPI001CD5FC13 (uroporphyrinogen-III C-methyltransferase n=1 Tax=Hasllibacter sp. MH4015 TaxID=2854029 RepID=UPI001CD5FC13)

HSP 1 Score: 263 bits (671), Expect = 5.920e-87
Identity = 133/151 (88.08%), Postives = 143/151 (94.70%), Query Frame = 1 
Query:    1 MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSHVRPGADLIGVGKRAGRLSPKQHHVSQLLVEYAQEGGRIVRLKSGDSGLFGRLEEEQVALRAAGIEYEIIPGIPSAVAAAAACGIPLTRRLTARRVQFVTGHDATGE 453
            MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSH R GADL+GVGKRAGR SP+Q HVS+LLV+YA++GGR+VRLKSGDSGLFGRLEEE VALR AGI YEIIPG+PSA+AAAAA GIPLTRRLTARRVQFVTGHDA+GE
Sbjct:    1 MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSHARSGADLVGVGKRAGRPSPQQRHVSRLLVDYARQGGRVVRLKSGDSGLFGRLEEELVALREAGIPYEIIPGVPSAIAAAAAAGIPLTRRLTARRVQFVTGHDASGE 151
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10347.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A222E5E9_9RHOB4.380e-99100.00Uroporphyrinogen-III C-methyltransferase n=7 Tax=R... [more]
A0A238K1Y2_9RHOB4.180e-9091.39Uroporphyrinogen-III C-methyltransferase n=6 Tax=R... [more]
A0A1X7BR40_9RHOB2.040e-8991.33Uroporphyrinogen-III C-methyltransferase n=1 Tax=R... [more]
X6L5P3_9RHOB2.750e-8990.67Uroporphyrinogen-III C-methyltransferase n=1 Tax=R... [more]
A0A1X6ZMA0_9RHOB3.360e-8890.00Uroporphyrinogen-III C-methyltransferase n=1 Tax=R... [more]
UPI001D0AC44B4.770e-8888.08uroporphyrinogen-III C-methyltransferase n=1 Tax=R... [more]
A0A8J8B9A2_9RHOB6.780e-8889.40Uroporphyrinogen-III C-methyltransferase n=1 Tax=A... [more]
Q161R2_ROSDO6.780e-8889.40Uroporphyrinogen-III C-methyltransferase n=3 Tax=R... [more]
Q28N74_JANSC1.410e-8790.07Uroporphyrinogen-III C-methyltransferase n=1 Tax=J... [more]
UPI001CD5FC135.920e-8788.08uroporphyrinogen-III C-methyltransferase n=1 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10347contigC-australica_Contig_10347:373..825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog391595.RLO149_c006270
Preferred namecobA
PFAMsCysG_dimeriser,NAD_binding_7,Sirohm_synth_M,TP_methylase
Model size453
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00003,RC00871,RC01012,RC01034
KEGG koko:K02302,ko:K02303
KEGG ReactionR02864,R03194,R03947
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.74e-89
EggNOG OGsCOG0007@1|root,COG0007@2|Bacteria,1MUI0@1224|Proteobacteria,2TRJC@28211|Alphaproteobacteria,2P14U@2433|Roseobacter
EC1.3.1.76,2.1.1.107,4.99.1.4
DescriptionTetrapyrrole (Corrin/Porphyrin) Methylases
Cds size453
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586772.115122-CDS-C-australica_Contig_10347:372..8251682586772.115122-CDS-C-australica_Contig_10347:372..825Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10347 373..825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10347.1.1prot_C-australica_Contig_10347.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10347 373..825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10347.1.1

>prot_C-australica_Contig_10347.1.1 ID=prot_C-australica_Contig_10347.1.1|Name=mRNA_C-australica_Contig_10347.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=151bp
MSGFVSFVGSGPGDPELLTLKAVDRLKRADAVLFDDLSSGPILSHVRPGA
DLIGVGKRAGRLSPKQHHVSQLLVEYAQEGGRIVRLKSGDSGLFGRLEEE
QVALRAAGIEYEIIPGIPSAVAAAAACGIPLTRRLTARRVQFVTGHDATG
E
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mRNA from alignment at C-australica_Contig_10347:373..825+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10347.1.1 ID=mRNA_C-australica_Contig_10347.1.1|Name=mRNA_C-australica_Contig_10347.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=453bp|location=Sequence derived from alignment at C-australica_Contig_10347:373..825+ (Chrysoparadoxa australica CS_1217)
ATGAGCGGTTTCGTCAGTTTCGTCGGCAGCGGACCGGGCGATCCCGAACT
TTTGACGCTCAAGGCGGTGGACCGTCTGAAACGCGCCGATGCGGTGCTGT
TCGATGACCTGTCGTCTGGCCCGATCCTCAGCCATGTACGCCCCGGCGCT
GACCTGATCGGCGTCGGCAAACGGGCCGGGCGGCTGTCACCGAAGCAGCA
CCATGTCAGTCAGTTGCTGGTGGAGTATGCTCAGGAGGGCGGGCGCATCG
TGCGGCTGAAATCCGGCGACTCGGGGCTGTTCGGGCGGCTGGAAGAAGAA
CAGGTCGCCCTGCGGGCGGCGGGCATCGAGTATGAGATCATCCCGGGCAT
CCCCTCGGCCGTGGCGGCGGCGGCGGCCTGTGGCATTCCGCTGACCCGGC
GGCTGACCGCGCGGCGGGTGCAGTTTGTGACCGGCCATGATGCCACCGGG
GAG
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Coding sequence (CDS) from alignment at C-australica_Contig_10347:373..825+

>mRNA_C-australica_Contig_10347.1.1 ID=mRNA_C-australica_Contig_10347.1.1|Name=mRNA_C-australica_Contig_10347.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=453bp|location=Sequence derived from alignment at C-australica_Contig_10347:373..825+ (Chrysoparadoxa australica CS_1217)
ATGAGCGGTTTCGTCAGTTTCGTCGGCAGCGGACCGGGCGATCCCGAACT
TTTGACGCTCAAGGCGGTGGACCGTCTGAAACGCGCCGATGCGGTGCTGT
TCGATGACCTGTCGTCTGGCCCGATCCTCAGCCATGTACGCCCCGGCGCT
GACCTGATCGGCGTCGGCAAACGGGCCGGGCGGCTGTCACCGAAGCAGCA
CCATGTCAGTCAGTTGCTGGTGGAGTATGCTCAGGAGGGCGGGCGCATCG
TGCGGCTGAAATCCGGCGACTCGGGGCTGTTCGGGCGGCTGGAAGAAGAA
CAGGTCGCCCTGCGGGCGGCGGGCATCGAGTATGAGATCATCCCGGGCAT
CCCCTCGGCCGTGGCGGCGGCGGCGGCCTGTGGCATTCCGCTGACCCGGC
GGCTGACCGCGCGGCGGGTGCAGTTTGTGACCGGCCATGATGCCACCGGG
GAG
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