mRNA_C-australica_Contig_10328.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10328.1.1
Unique NamemRNA_C-australica_Contig_10328.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10328.1.1 vs. uniprot
Match: X1TZZ0_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1TZZ0_9ZZZZ)

HSP 1 Score: 164 bits (414), Expect = 8.350e-47
Identity = 72/135 (53.33%), Postives = 103/135 (76.30%), Query Frame = 1
Query:  181 PHYETIDPHNYNSQQHGDLYGNGVNAKLMAGYMGHYICFPYFGKPNSDFEAESGSGTHGEAFTVKYEVEKELNTES-AVVRASATLPLTKYSINRTITLLQGQSVVLVEEDIEILESFDRPYQWFQNVPFGKPFV 582
            PHY+TIDP +YN  +H  LYG+  ++K+MAGYMGH++CFPY G  NS+FE + G G HGEA  VK+++++ +  ++ A +  SATLPL+ YS+ R++T+  GQSVV+VEE++E LE FDRPYQW Q++ FG PF+
Sbjct:    4 PHYKTIDPQDYNPVEHDPLYGSNNDSKVMAGYMGHFLCFPYVGGMNSNFEQQLGFGAHGEAAVVKWDIDQMVTDDNEAAILTSATLPLSSYSVKRSLTMHSGQSVVMVEEEVENLEGFDRPYQWVQHITFGNPFI 138          
BLAST of mRNA_C-australica_Contig_10328.1.1 vs. uniprot
Match: A0A7V2HJ09_9BACT (Uncharacterized protein n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7V2HJ09_9BACT)

HSP 1 Score: 152 bits (384), Expect = 3.990e-41
Identity = 76/188 (40.43%), Postives = 115/188 (61.17%), Query Frame = 1
Query:   22 GQVALTKTSFKGREAYALQNDNIRITMLTGGGYIAELSLLSLDQKESINPLFTPHYETIDPHNYNSQQHGDLYGNGVNAKLMAGYMGHYICFPYFGKPNSDFEAESGSGTHGEAFTVKYE-VEKELNTESAVVRASATLPLTKYSINRTITLLQGQSVVLVEEDIEILESFDRPYQWFQNVPFGKPFV 582
            G ++L + +F+GR+A+ L+N  IR+++L+GGG+IAE  LLS D K ++NP+  PHY TIDPH ++  +H  +YG G    LM+GYMGH +CFP +G P+ + EA +G G HGEA   +++ V  E   +   +   A L  T + + R +T+  G+  + V E +     FDRP  W Q+  FG PF 
Sbjct:   23 GGLSLREDAFQGRKAWVLENGLIRVSILSGGGHIAETRLLSADPKVALNPMRVPHYPTIDPHTFDPARHHAIYGAGPGRFLMSGYMGHLLCFPSYGPPSPE-EAAAGLGPHGEAPISEWKKVRVEHGGDRLTLHYGADLRRTLFRVERAVTIRTGKRTIHVRESVHNEAPFDRPVNWMQHATFGPPFA 209          
BLAST of mRNA_C-australica_Contig_10328.1.1 vs. uniprot
Match: A0A3N5KWM6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Acidobacteriales bacterium TaxID=2282142 RepID=A0A3N5KWM6_9BACT)

HSP 1 Score: 130 bits (326), Expect = 2.090e-34
Identity = 74/186 (39.78%), Postives = 107/186 (57.53%), Query Frame = 1
Query:   31 ALTKTSFKGREAYALQNDNIRITMLTGGGYIAELSLLSLDQKESINPLFTPHYETIDPHNYNSQQHGDLYGNGVNAKLMAGYMGHYICFPYFGKPNSDFEAESGSGTHGEAFTVKYEVEK--ELNTESAVVRASATLPLTKYSINRTITLLQGQSVVLVEEDIEILESFDRPYQWFQNVPFGKPFV 582
            ++   +F+GREAY L+ND IR++++ GGG+I E+  LS D +++INP++ P                          L AGYMG  +CFP+FG P+ D EA  G   HGEA  V+++  +  +++        SA L  T+Y + RT+TLL G+SVV VEE IE L +FDRP+   Q+  FG PFV
Sbjct:   23 SMRSETFQGREAYVLENDKIRVSLIRGGGHIGEIRFLSDDPRKAINPMYIP--------------------------LKAGYMGQLLCFPWFGPPSPD-EARQGLRFHGEAGGVEWKQSQPPKVDDRGVSFSYSADLEKTQYRVERTVTLLTGESVVYVEEWIENLAAFDRPFNRNQHPTFGAPFV 181          
BLAST of mRNA_C-australica_Contig_10328.1.1 vs. uniprot
Match: A0A2E5VNW7_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E5VNW7_9PLAN)

HSP 1 Score: 130 bits (326), Expect = 1.630e-32
Identity = 69/178 (38.76%), Postives = 108/178 (60.67%), Query Frame = 1
Query:   49 FKGREAYALQNDNIRITMLTGGGYIAELSLLSLDQKESINPLFTPHYETIDPHNYNSQQHGDLYGNGVNAKLMAGYMGHYICFPYFGKPNSDFEAESGSGTHGEAFTVKYEVEKELNTESAVVRASATLPLTKYSINRTITLLQGQSVVLVEEDIEILESFDRPYQWFQNVPFGKPFV 582
            F+ R+A+ L+ND +R+++L GGG+IAE+ +L     ES++PL+ P + +IDP  +++ +H  +YG+   A L+AG MGH +CF ++G P S+ E  +G   HGE   +K +   +  TE   +     L  +  +I RT+ LL  Q V+ VEE  E L S D+P+ W Q+  FG PFV
Sbjct:   45 FQNRDAWKLENDRLRVSILEGGGHIAEI-VLKTAAGESVSPLWVPPWPSIDPSTFDADKHSTIYGSNSEASLLAGIMGHNLCFNFWGAP-SEAEFRAGMSFHGEVSILKAQKLTQTGTE---LTHRLDLARSGTTITRTLRLLPNQPVLYVEETAENLSSLDKPFGWVQHPTFGPPFV 217          
BLAST of mRNA_C-australica_Contig_10328.1.1 vs. uniprot
Match: A0A7C5I6I4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Solibacter sp. TaxID=2068625 RepID=A0A7C5I6I4_9BACT)

HSP 1 Score: 120 bits (301), Expect = 1.530e-31
Identity = 61/126 (48.41%), Postives = 82/126 (65.08%), Query Frame = 1
Query:    4 MVTAVCGQVALTKT-SFK-----GREAYALQNDNIRITMLTGGGYIAELSLLSLDQKESINPLFTPHYETIDPHNYNSQQHGDLYGNGVNAKLMAGYMGHYICFPYFGKPNSDFEAESGSGTHGEA 363
            + TA  G   + +T SF+     GR A+ LQN  +RI+ L GGG+I E+  LS D ++S+NP+  PHY+TIDPH Y+  +HG LYG  V  +LM+GYMG ++CFPYFG P+S  E     G HGEA
Sbjct:   14 LFTAAAGTSLVAQTASFQEDKLHGRRAFVLQNGRMRISTLPGGGFIGEIRFLSPDPRKSVNPMRVPHYQTIDPHTYDVSRHGALYGTDVQRRLMSGYMGDFLCFPYFG-PSSKAEFALDLGQHGEA 138          
BLAST of mRNA_C-australica_Contig_10328.1.1 vs. uniprot
Match: A0A7X4AMV1_9BACT (Uncharacterized protein n=1 Tax=Acidobacteriia bacterium TaxID=2081523 RepID=A0A7X4AMV1_9BACT)

HSP 1 Score: 123 bits (309), Expect = 4.260e-30
Identity = 65/178 (36.52%), Postives = 104/178 (58.43%), Query Frame = 1
Query:   49 FKGREAYALQNDNIRITMLTGGGYIAELSLLSLDQKESINPLFTPHYETIDPHNYNSQQHGDLYGNGVNAKLMAGYMGHYICFPYFGKPNSDFEAESGSGTHGEAFTVKYEVEKELNTESAVVRASATLPLTKYSINRTITLLQGQSVVLVEEDIEILESFDRPYQWFQNVPFGKPFV 582
            F+ R A+ ++ND +R+T+L GGG +AE+ +L  D  +S+NPL+ P + ++DP  ++  +HG++YG    A L+AG MGH +CF ++G P S+ E E G   HGE   +  E+   ++ +   +     L  +  +I RT+ L  GQ V+ VEE        DRP+ W Q+  FG PF+
Sbjct:   39 FENRNAWRIENDRLRVTILEGGGQLAEI-VLKTDSGDSLNPLWIPPWPSLDPWEFDVSKHGEIYGTDSEAALLAGIMGHNLCFDFWGAP-SETEYEQGMAYHGEVSLLAAEM---ISHDERSLVHKLDLENSATAITRTMRLADGQPVLYVEETALNKLGLDRPFGWVQHPTFGPPFL 211          
BLAST of mRNA_C-australica_Contig_10328.1.1 vs. uniprot
Match: A0A2E5FKU0_9BACT (Uncharacterized protein n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A2E5FKU0_9BACT)

HSP 1 Score: 122 bits (305), Expect = 7.620e-30
Identity = 72/179 (40.22%), Postives = 103/179 (57.54%), Query Frame = 1
Query:   46 SFKGREAYALQNDNIRITMLTGGGYIAELSLLSLDQKESINPLFTPHYETIDPHNYNSQQHGDLYGNGVNAKLMAGYMGHYICFPYFGKPNSDFEAESGSGTHGEAFTVKYEVEKELNTESAVVRASATLPLTKYSINRTITLLQGQSVVLVEEDIEILESFDRPYQWFQNVPFGKPFV 582
            S   R    LQN+ I +T+L GGG+IAEL L S     ++NPL+ P ++TIDP +YN  +H + YG+G  A+L++G +GH +CF YFG P SD EA SG   HGEA  V ++ E+    +   + A+A LP  +  I R + L      ++V E  E L   DR   W ++V  G PF+
Sbjct:    2 SLNHRLTVQLQNEEIYLTLLPGGGHIAELVLKS----NAVNPLWLPPWKTIDPVDYNPTEHTE-YGHGPEAQLLSGIVGHNLCFDYFGPP-SDEEASSGLTVHGEASIVNWKTEQ----QPGKLIATAELPQAEMRIERVLKLAPKAQGIVVTETAENLRGIDRAVGWTEHVTLGPPFL 170          
BLAST of mRNA_C-australica_Contig_10328.1.1 vs. uniprot
Match: UPI0012BADBF4 (hypothetical protein n=1 Tax=Bryobacter aggregatus TaxID=360054 RepID=UPI0012BADBF4)

HSP 1 Score: 118 bits (295), Expect = 8.030e-29
Identity = 70/179 (39.11%), Postives = 104/179 (58.10%), Query Frame = 1
Query:   46 SFKGREAYALQNDNIRITMLTGGGYIAELSLLSLDQKESINPLFTPHYETIDPHNYNSQQHGDLYGNGVNAKLMAGYMGHYICFPYFGKPNSDFEAESGSGTHGEAFTVKYEVEKELNTESAVVRASATLPLTKYSINRTITLLQGQSVVLVEEDIEILESFDRPYQWFQNVPFGKPFV 582
            +++GR+AY L+ND +R+T+L  GG+IAEL    L +   +NPL+TP + TI+P  Y+ +QH + YG+   +KL++G MGH  C   FG P+ + EA +G   HGEA  V Y+ +             A LPL++  + R I L +G  V +VE  +  L  FDR   W ++V  G PFV
Sbjct:    5 AYRGRKAYRLENDQLRLTVLAEGGHIAEL----LHRSSGVNPLWTPPWPTIEPSAYSPEQHPE-YGSDAESKLLSGIMGHNWCVDLFGPPSKE-EAAAGYTVHGEASVVAYDKD-----------FKAHLPLSQLDVQRQIAL-EGNRVAIVET-VRNLLPFDRSIAWQEHVTLGPPFV 164          
BLAST of mRNA_C-australica_Contig_10328.1.1 vs. uniprot
Match: A0A7V9SJH2_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V9SJH2_9BACT)

HSP 1 Score: 118 bits (295), Expect = 1.780e-28
Identity = 69/179 (38.55%), Postives = 106/179 (59.22%), Query Frame = 1
Query:   46 SFKGREAYALQNDNIRITMLTGGGYIAELSLLSLDQKESINPLFTPHYETIDPHNYNSQQHGDLYGNGVNAKLMAGYMGHYICFPYFGKPNSDFEAESGSGTHGEAFTVKYEVEKELNTESAVVRASATLPLTKYSINRTITLLQGQSVVLVEEDIEILESFDRPYQWFQNVPFGKPFV 582
            +++GR A +++ND +R+T+L  GG++AE+    LD+   +NPL+TP + +I+P  Y++  H   YG GV+A+L++G MGH +C   FG P+++ EA +G   HGEA TV YE+    + +   +   A LPL    I R + L  GQ+V    E IE     DR   W Q+V  G PF+
Sbjct:    6 TYRGRRASSIENDRLRVTVLFEGGHVAEV----LDKGSGMNPLWTPPWPSIEPSTYDAALH-TAYGEGVDARLLSGIMGHNLCADIFGGPSAE-EAAAGLPVHGEASTVLYEI----SADEGELTMQADLPLAGLRIERRLRL-HGQAVSF-RESIENRGGIDRAIGWTQHVTLGPPFL 172          
BLAST of mRNA_C-australica_Contig_10328.1.1 vs. uniprot
Match: I3ZB49_TERRK (Uncharacterized protein n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) TaxID=926566 RepID=I3ZB49_TERRK)

HSP 1 Score: 117 bits (292), Expect = 5.020e-28
Identity = 65/183 (35.52%), Postives = 103/183 (56.28%), Query Frame = 1
Query:   34 LTKTSFKGREAYALQNDNIRITMLTGGGYIAELSLLSLDQKESINPLFTPHYETIDPHNYNSQQHGDLYGNGVNAKLMAGYMGHYICFPYFGKPNSDFEAESGSGTHGEAFTVKYEVEKELNTESAVVRASATLPLTKYSINRTITLLQGQSVVLVEEDIEILESFDRPYQWFQNVPFGKPFV 582
            + KT++  R+A++++ND++R+T+   GG+IAE+      +   +NPL+TPH+ T +P  +   Q  +L+GNGV A L+ G +GH  C   FG P S  EA +G   HGEA  + YE+ ++ NT    +     +PL +    RTITL      VL+ E +    + +RP  W Q+V    PF+
Sbjct:    1 MPKTTYLNRKAFSIENDDLRVTVTVEGGHIAEV----FSKAAGVNPLWTPHWTTSEPSEFGPAQE-ELFGNGVEATLLCGILGHNTCLDLFGGP-SPAEAAAGMTAHGEASILPYEITEDGNT----LHCRLPMPLAELDFERTITLHGAD--VLIHEKVINRTAMERPLAWTQHVTLSPPFL 171          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10328.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
X1TZZ0_9ZZZZ8.350e-4753.33Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A7V2HJ09_9BACT3.990e-4140.43Uncharacterized protein n=1 Tax=Bryobacteraceae ba... [more]
A0A3N5KWM6_9BACT2.090e-3439.78Uncharacterized protein (Fragment) n=1 Tax=Acidoba... [more]
A0A2E5VNW7_9PLAN1.630e-3238.76Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A7C5I6I4_9BACT1.530e-3148.41Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A7X4AMV1_9BACT4.260e-3036.52Uncharacterized protein n=1 Tax=Acidobacteriia bac... [more]
A0A2E5FKU0_9BACT7.620e-3040.22Uncharacterized protein n=1 Tax=Bryobacterales bac... [more]
UPI0012BADBF48.030e-2939.11hypothetical protein n=1 Tax=Bryobacter aggregatus... [more]
A0A7V9SJH2_9BACT1.780e-2838.55Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
I3ZB49_TERRK5.020e-2835.52Uncharacterized protein n=1 Tax=Terriglobus roseus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10328contigC-australica_Contig_10328:244..825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog926566.Terro_0116
Model size582
Max annot lvl204432|Acidobacteriia
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.97e-29
EggNOG OGsCOG2017@1|root,COG2017@2|Bacteria,3Y4YM@57723|Acidobacteria,2JNB9@204432|Acidobacteriia
Descriptionconverts alpha-aldose to the beta-anomer
Cds size579
COG categoryG
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586770.5712185-UTR-C-australica_Contig_10328:243..2461682586770.5712185-UTR-C-australica_Contig_10328:243..246Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10328 244..246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586770.5820625-CDS-C-australica_Contig_10328:246..8251682586770.5820625-CDS-C-australica_Contig_10328:246..825Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10328 247..825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10328.1.1prot_C-australica_Contig_10328.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10328 247..825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10328.1.1

>prot_C-australica_Contig_10328.1.1 ID=prot_C-australica_Contig_10328.1.1|Name=mRNA_C-australica_Contig_10328.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=193bp
MVTAVCGQVALTKTSFKGREAYALQNDNIRITMLTGGGYIAELSLLSLDQ
KESINPLFTPHYETIDPHNYNSQQHGDLYGNGVNAKLMAGYMGHYICFPY
FGKPNSDFEAESGSGTHGEAFTVKYEVEKELNTESAVVRASATLPLTKYS
INRTITLLQGQSVVLVEEDIEILESFDRPYQWFQNVPFGKPFV
back to top

mRNA from alignment at C-australica_Contig_10328:244..825+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10328.1.1 ID=mRNA_C-australica_Contig_10328.1.1|Name=mRNA_C-australica_Contig_10328.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=582bp|location=Sequence derived from alignment at C-australica_Contig_10328:244..825+ (Chrysoparadoxa australica CS_1217)
TTAATGGTTACTGCTGTTTGTGGACAGGTGGCTCTGACTAAAACTAGTTT TAAGGGACGTGAGGCCTATGCGCTTCAGAATGACAACATACGGATAACCA TGTTAACTGGTGGGGGATATATCGCAGAACTTAGCCTACTATCTTTAGAC CAAAAGGAATCAATCAATCCGTTATTCACCCCTCATTATGAAACCATAGA CCCTCATAATTATAATTCTCAACAACATGGGGATTTATATGGTAACGGTG TTAATGCCAAACTCATGGCCGGTTACATGGGACACTATATATGCTTTCCG TATTTTGGTAAACCGAACTCGGATTTTGAAGCGGAATCAGGTAGCGGTAC ACATGGAGAAGCCTTCACGGTAAAATACGAGGTAGAAAAGGAATTAAATA CTGAAAGTGCCGTTGTCAGGGCTTCTGCAACTTTACCATTGACAAAATAT TCCATTAACAGGACCATCACACTATTGCAGGGACAGTCTGTCGTGCTGGT TGAGGAGGATATTGAAATCCTGGAAAGCTTTGATCGCCCGTACCAGTGGT TTCAAAATGTGCCTTTTGGAAAACCATTTGTT
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_10328:244..825+

>mRNA_C-australica_Contig_10328.1.1 ID=mRNA_C-australica_Contig_10328.1.1|Name=mRNA_C-australica_Contig_10328.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=579bp|location=Sequence derived from alignment at C-australica_Contig_10328:244..825+ (Chrysoparadoxa australica CS_1217)
ATGGTTACTGCTGTTTGTGGACAGGTGGCTCTGACTAAAACTAGTTTTAA
GGGACGTGAGGCCTATGCGCTTCAGAATGACAACATACGGATAACCATGT
TAACTGGTGGGGGATATATCGCAGAACTTAGCCTACTATCTTTAGACCAA
AAGGAATCAATCAATCCGTTATTCACCCCTCATTATGAAACCATAGACCC
TCATAATTATAATTCTCAACAACATGGGGATTTATATGGTAACGGTGTTA
ATGCCAAACTCATGGCCGGTTACATGGGACACTATATATGCTTTCCGTAT
TTTGGTAAACCGAACTCGGATTTTGAAGCGGAATCAGGTAGCGGTACACA
TGGAGAAGCCTTCACGGTAAAATACGAGGTAGAAAAGGAATTAAATACTG
AAAGTGCCGTTGTCAGGGCTTCTGCAACTTTACCATTGACAAAATATTCC
ATTAACAGGACCATCACACTATTGCAGGGACAGTCTGTCGTGCTGGTTGA
GGAGGATATTGAAATCCTGGAAAGCTTTGATCGCCCGTACCAGTGGTTTC
AAAATGTGCCTTTTGGAAAACCATTTGTT
back to top