mRNA_C-australica_Contig_1032.3.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1032.3.1
Unique NamemRNA_C-australica_Contig_1032.3.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: A0A7S4JP54_9STRA (Protein xylosyltransferase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JP54_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 8.420e-16
Identity = 42/97 (43.30%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:    1 LHVGSQWFVIPPSYAAWLLNDT--ALVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASFSS---NKEH-------CLMPSPTHCGRSP 255
            L   SQWF++   +A +L +     LV    +YA+H+VVADE FF T+L+H+ +CH H N NFL+  F     +KE        C+MP P HCGRSP
Sbjct:  253 LMTSSQWFILSREFAKYLADAAPGTLVHDMLEYAEHMVVADEQFFGTVLRHTKYCHKHHNGNFLFLEFGKWEDSKEEEARDPRKCVMPDPNHCGRSP 349
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BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: A0A7S2UAF3_9STRA (Protein xylosyltransferase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAF3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.030e-15
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:    1 LHVGSQWFVIPPSYAAWLLNDT--ALVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASFSS----------NKEHCLMPSPTHCGRSP 255
            L+  SQWFV+   +A +L +      V  F  Y +H+ +ADE FF T+L ++P CH H N+NFL+  F            +   CLMP P HCGRSP
Sbjct:  391 LYTASQWFVLSREFAKYLADPLPGTFVFDFLPYVEHVAIADETFFGTVLMNTPFCHKHHNDNFLHLQFDRWENEVDEEKRDPRKCLMPKPDHCGRSP 487
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BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: A0A1Z5KH39_FISSO (Protein xylosyltransferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KH39_FISSO)

HSP 1 Score: 77.4 bits (189), Expect = 1.400e-14
Identity = 38/97 (39.18%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:    1 LHVGSQWFVIPPSYAAWLLNDT--ALVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASFSS----------NKEHCLMPSPTHCGRSP 255
            +   SQWF+I   +A +L      + V  +  Y +H+VVADE FF T+L+H+  CH H N NFL+  F            ++  C MP+P HCGRSP
Sbjct:  372 MFTSSQWFIISRDFAEYLATPEPGSFVHDYLTYIEHVVVADETFFGTVLRHTSFCHQHHNRNFLHLQFDRWESELPAGLRDERKCPMPNPDHCGRSP 468
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BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: B7FSV5_PHATC (Protein xylosyltransferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSV5_PHATC)

HSP 1 Score: 75.9 bits (185), Expect = 4.870e-14
Identity = 41/103 (39.81%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:    1 LHVGSQWFVIPPSYAAWLLNDTA--LVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASF--------SSNKE--HCLMPSPTHCGRSPKASPGD 273
            L   SQWF+I   +A +L    A   V  +  Y +H+VVADE FF T+L+H+P C  H N NFL+  F        S++++   C+M  P HCGRSP     D
Sbjct:  341 LFTSSQWFIISREFAEYLARAEAGTFVHQYLDYIEHVVVADETFFGTVLRHTPFCLKHHNRNFLHLQFDRWESELPSNDRDPRKCMMLDPNHCGRSPTTLTAD 443
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BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: A0A7S3V934_9STRA (Protein xylosyltransferase (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V934_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 5.520e-14
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 1 
Query:    1 LHVGSQWFVIPPSYAAWLLNDT----ALVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASFSS----------NKEHCLMPSPTHCGRSP 255
            LH  SQWF+I   +A +    +      V  + QYA+H+VVADE FF T+L+H+  C  H N NFLY +F            +   C+M  P  CGRSP
Sbjct:   70 LHTSSQWFIISREFAEYFATASDQPGTFVHEYIQYAEHVVVADEHFFGTVLRHTEFCTKHHNSNFLYLTFDRWESDMPNFERDPRKCIMVDPDKCGRSP 168
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BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: A0A8J2SSV4_9STRA (Protein xylosyltransferase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSV4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 8.960e-14
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 1 
Query:    1 LHVGSQWFVIPPSYAAWLLNDTA------LVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASF-----------SSNKEHCLMPSPTHCGRSP 255
            +++GSQW VI   +AA+     +          +  Y ++ +VADE FF+T+LK+SP CH H N+NFL+  F           + NK  CL P P HCGRSP
Sbjct:  289 MYMGSQWMVITRDFAAYATGRESPRQRRSFASQYAPYGRYTMVADENFFTTVLKNSPMCHKHYNQNFLHVQFDQWESDKVEGPAQNK--CLQPDPRHCGRSP 388
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BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: A0A1Z5KSA0_FISSO (Protein xylosyltransferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KSA0_FISSO)

HSP 1 Score: 74.3 bits (181), Expect = 1.690e-13
Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:    1 LHVGSQWFVIPPSYAAWLLNDT--ALVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASFSS----------NKEHCLMPSPTHCGRSP 255
            +   SQWF+I   +A +L      + V  +  Y +H+VVADE FF T+L+H+  C  H N NFL+  F            ++  C MP+P HCGRSP
Sbjct:  365 MFTSSQWFIISRDFAEYLATPEPGSFVHDYLTYIEHVVVADETFFGTVLRHTSFCRQHHNRNFLHLQFDRWESELPAGLRDERKCPMPNPDHCGRSP 461
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BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: A0A7S2L4F4_9STRA (Protein xylosyltransferase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L4F4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.070e-12
Identity = 37/98 (37.76%), Postives = 55/98 (56.12%), Query Frame = 1 
Query:    1 LHVGSQWFVIPPSYAAWLLND--TALVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASFSS-----------NKEHCLMPSPTHCGRSP 255
            +H  SQWF+I   +A ++ N    +LV +   Y +H+VVADE FF T+L+++  C    N+NFL+  F S           +   C+M +P HCGRSP
Sbjct:   74 IHTSSQWFIISREFAWYIANPPKNSLVDYLRDYMEHVVVADESFFGTVLRNTHFCSTLHNDNFLHIQFGSWENEDKSANQRDPRKCVMRNPDHCGRSP 171
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BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: B8LEP4_THAPS (Protein xylosyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEP4_THAPS)

HSP 1 Score: 63.5 bits (153), Expect = 1.490e-10
Identity = 32/96 (33.33%), Postives = 53/96 (55.21%), Query Frame = 1 
Query:    1 LHVGSQWFVIPPSYAAWLLNDT--ALVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASFSS---------NKEHCLMPSPTHCGRSP 255
            ++  SQWF+I   +A +L +    + V ++  Y +H+VVADE FF T+++++  C    N+NFL+  F           ++  CL  +  HCGRSP
Sbjct:   27 IYTSSQWFIISRDFAWYLASPPKDSFVDYYLDYIEHVVVADEAFFGTVIRNTHFCSTLHNDNFLHIQFDRWENEAEGERDQRKCLFKNRDHCGRSP 122
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BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: A0A7S4RM73_9STRA (Protein xylosyltransferase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RM73_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.030e-10
Identity = 35/97 (36.08%), Postives = 49/97 (50.52%), Query Frame = 1 
Query:    1 LHVGSQWFVIPPSYAAWLLNDT--ALVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASFS--SNKEH--------CLMPSPTHCGRSP 255
            ++  SQWF+    +A ++       +     +Y +H+VVADE FF TLL+HSP C  H N NFL+  F    N+E         C+      CGRSP
Sbjct:  186 IYTASQWFIASREFAKYIAEAVPGTIAHSLIEYMKHVVVADESFFGTLLRHSPFCRKHHNSNFLHLHFDRWENEEENAKRDERKCIFRDRERCGRSP 282
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A7S4JP54_9STRA8.420e-1643.30Protein xylosyltransferase n=2 Tax=Odontella aurit... [more]
A0A7S2UAF3_9STRA4.030e-1540.21Protein xylosyltransferase n=1 Tax=Attheya septent... [more]
A0A1Z5KH39_FISSO1.400e-1439.18Protein xylosyltransferase n=1 Tax=Fistulifera sol... [more]
B7FSV5_PHATC4.870e-1439.81Protein xylosyltransferase n=2 Tax=Phaeodactylum t... [more]
A0A7S3V934_9STRA5.520e-1439.39Protein xylosyltransferase (Fragment) n=1 Tax=Chae... [more]
A0A8J2SSV4_9STRA8.960e-1439.22Protein xylosyltransferase n=1 Tax=Pelagomonas cal... [more]
A0A1Z5KSA0_FISSO1.690e-1338.14Protein xylosyltransferase n=1 Tax=Fistulifera sol... [more]
A0A7S2L4F4_9STRA1.070e-1237.76Protein xylosyltransferase (Fragment) n=1 Tax=Skel... [more]
B8LEP4_THAPS1.490e-1033.33Protein xylosyltransferase (Fragment) n=1 Tax=Thal... [more]
A0A7S4RM73_9STRA2.030e-1036.08Protein xylosyltransferase (Fragment) n=1 Tax=Dity... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1032contigC-australica_Contig_1032:4597..5042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LMY0
Preferred nameXYLT2
PFAMsBranch,WSC,Xylo_C
Model size279
Max annot lvl2759|Eukaryota
KEGG koko:K00771
KEGG ReactionR05925
KEGG Pathwayko00532,ko00534,ko01100,map00532,map00534,map01100
KEGG ModuleM00057
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0002009,GO:0002119,GO:0002164,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005996,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006139,GO:0006725,GO:0006790,GO:0006793,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0007610,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009791,GO:0009888,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016763,GO:0018991,GO:0019098,GO:0019321,GO:0019538,GO:0022008,GO:0022414,GO:0030154,GO:0030158,GO:0030166,GO:0030201,GO:0030202,GO:0030203,GO:0030204,GO:0030206,GO:0030210,GO:0031090,GO:0031224,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032504,GO:0033319,GO:0033554,GO:0034097,GO:0034605,GO:0034641,GO:0034645,GO:0035252,GO:0040025,GO:0042221,GO:0042285,GO:0042732,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046483,GO:0048513,GO:0048519,GO:0048523,GO:0048569,GO:0048583,GO:0048585,GO:0048609,GO:0048679,GO:0048681,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051716,GO:0051960,GO:0051961,GO:0055086,GO:0060284,GO:0060429,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:0140096,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:1903510,GO:2000026
Exons2
Evalue1.87e-22
EggNOG OGsKOG0799@1|root,KOG0799@2759|Eukaryota
EC2.4.2.26
Descriptionacetylglucosaminyltransferase activity
Cds size279
COG categoryO
CAZyGT14
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586770.0818343-CDS-C-australica_Contig_1032:4596..47041682586770.0818343-CDS-C-australica_Contig_1032:4596..4704Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1032 4597..4704 +
1682586770.1009142-CDS-C-australica_Contig_1032:4871..50421682586770.1009142-CDS-C-australica_Contig_1032:4871..5042Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1032 4872..5042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1032.3.1prot_C-australica_Contig_1032.3.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1032 4597..5042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1032.3.1

>prot_C-australica_Contig_1032.3.1 ID=prot_C-australica_Contig_1032.3.1|Name=mRNA_C-australica_Contig_1032.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=93bp
LHVGSQWFVIPPSYAAWLLNDTALVPHFTQYAQHIVVADEVFFSTLLKHS
PHCHDHVNENFLYASFSSNKEHCLMPSPTHCGRSPKASPGDQ*
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mRNA from alignment at C-australica_Contig_1032:4597..5042+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1032.3.1 ID=mRNA_C-australica_Contig_1032.3.1|Name=mRNA_C-australica_Contig_1032.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=446bp|location=Sequence derived from alignment at C-australica_Contig_1032:4597..5042+ (Chrysoparadoxa australica CS_1217)
CTGCACGTTGGGTCCCAATGGTTCGTGATTCCTCCCTCCTACGCTGCTTG
GCTGCTGAATGACACAGCGCTGGTGCCACACTTCACGCAGTATGCCCAGC
ACATTGTGGTATGTTAGTTGCATTTGTTTAGCTGACAGAGACAGAATGAG
CCACGGCTAACTCAGTGGAGTGTAGGCAATTTTTTAGCGAGAGTGACCTC
AGGCATCTCTCTCTCATCCCACATAGCTCTCCCACATATAGCAGCAGCTC
ACAGCTCACTTCCATGGCCTATCAGGTTGCCGATGAGGTCTTCTTCTCCA
CGCTGCTGAAGCACTCCCCACACTGCCATGACCATGTGAACGAGAACTTC
CTTTACGCTAGCTTCAGCAGCAACAAGGAGCACTGCCTCATGCCTTCTCC
CACGCACTGTGGGCGCTCTCCCAAGGCGAGTCCAGGTGATCAGTGA
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Coding sequence (CDS) from alignment at C-australica_Contig_1032:4597..5042+

>mRNA_C-australica_Contig_1032.3.1 ID=mRNA_C-australica_Contig_1032.3.1|Name=mRNA_C-australica_Contig_1032.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=279bp|location=Sequence derived from alignment at C-australica_Contig_1032:4597..5042+ (Chrysoparadoxa australica CS_1217)
CTGCACGTTGGGTCCCAATGGTTCGTGATTCCTCCCTCCTACGCTGCTTG
GCTGCTGAATGACACAGCGCTGGTGCCACACTTCACGCAGTATGCCCAGC
ACATTGTGGTTGCCGATGAGGTCTTCTTCTCCACGCTGCTGAAGCACTCC
CCACACTGCCATGACCATGTGAACGAGAACTTCCTTTACGCTAGCTTCAG
CAGCAACAAGGAGCACTGCCTCATGCCTTCTCCCACGCACTGTGGGCGCT
CTCCCAAGGCGAGTCCAGGTGATCAGTGA
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