mRNA_C-australica_Contig_10313.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10313.1.1
Unique NamemRNA_C-australica_Contig_10313.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10313.1.1 vs. uniprot
Match: UPI0014734C1C (DUF4375 domain-containing protein n=1 Tax=Roseovarius confluentis TaxID=1852027 RepID=UPI0014734C1C)

HSP 1 Score: 522 bits (1344), Expect = 8.470e-186
Identity = 258/262 (98.47%), Postives = 260/262 (99.24%), Query Frame = 1
Query:   40 MAQENNCPATHSLVYPLDDVLQSAAIALQYDFNDTSGAEFGSEAHLAQTHRNVLGNLAGKSQAERDALILARLDWSTTATVPMLTLTTTDHAGLFNVFLETLDRHDLHDHAAALRATRDAFPVWDTTARNRYEQWSDGRGQIRDALLDKALREQSHRFKSARPGLLQKAAVLLSDDPSFDDYMARRSNAPDDRKLYFMLDELAACVPVGNAFDPDPDALTRVPPTIADFYVIHMLMLESMNGGFHQYIFNTTGALAPDMIAA 825
            MAQE+ CPA HSLVYPLDDVLQSAAIALQYDFNDTSGAEFGSEAHLAQTHRNVLGNLAGKSQAERDALILARLDWSTTATVPMLTLTTTDHAGLFNVFLETLDRHDLHDHAAALRATRDAFPVWDTTARNRYEQWSDGRGQIRDALLDKALREQSHRFKSARPGLLQKAAVLLSDDPSFDDYMARRSNAPDDRKLYFMLDELAACVPVGNAFDPDPDALTRVPPTIADFYVIHMLMLESMNGGFHQYIFN+TGALAPDMIAA
Sbjct:    1 MAQEHTCPAPHSLVYPLDDVLQSAAIALQYDFNDTSGAEFGSEAHLAQTHRNVLGNLAGKSQAERDALILARLDWSTTATVPMLTLTTTDHAGLFNVFLETLDRHDLHDHAAALRATRDAFPVWDTTARNRYEQWSDGRGQIRDALLDKALREQSHRFKSARPGLLQKAAVLLSDDPSFDDYMARRSNAPDDRKLYFMLDELAACVPVGNAFDPDPDALTRVPPTIADFYVIHMLMLESMNGGFHQYIFNSTGALAPDMIAA 262          
BLAST of mRNA_C-australica_Contig_10313.1.1 vs. uniprot
Match: UPI001375887E (DUF4375 domain-containing protein n=1 Tax=Roseibium sediminis TaxID=1775174 RepID=UPI001375887E)

HSP 1 Score: 221 bits (563), Expect = 4.160e-67
Identity = 111/254 (43.70%), Postives = 159/254 (62.60%), Query Frame = 1
Query:   58 CPATHSLVYPLDDVLQSAAIALQYDFNDTSGAEFGSEAHLAQTHRNVLGNLAGKSQAERDALILARLDWSTTATVPMLTLTTTDHAGLFNVFLETLDRHDLHDHAAALRATRDAFPVWDTTARNRYEQWSDGRGQIRDALLDKALREQSHRFKSARPGLLQKAAVLLSDDPSFDDYMARRSNAPDDRKLYFMLDELAACVPVGNAFDPDPDALTRVPPTIADFYVIHMLMLESMNGGFHQYIFNTTGALAPDMI 819
            CP    + YP+  +L++  + L  D + +  +E+GS +H+ +T   VLG L GKSQAERDAL+L+RL W T  +  +L L T   AGL+ +++E LDR  L  HA ALRA + AFP W+   R RY QWSDG G IR+  LD  L EQS RF SA+P LL+ A  L+  D S+DDY A+     +  +  ++L ++A+CVP   + D    AL  +P  +AD +V H++ LE  NGGFHQY++N++G  AP++I
Sbjct:   21 CPEPDKVYYPMTKLLKTEGLLLDSDVSISDISEYGSASHVRKTRETVLGKLDGKSQAERDALLLSRLAWETNGSYALLLLATGPEAGLYEIYIEVLDRAGLVAHADALRAVKAAFPNWNFPPRERYYQWSDGSGTIRNLKLDAELEEQSRRFNSAQPDLLETAQKLIEGDGSYDDYSAKLRAIDEYSRFDYLLWQIASCVPDWESPDEALHALATLPQALADLHVFHLMFLEGGNGGFHQYLYNSSGTFAPELI 274          
BLAST of mRNA_C-australica_Contig_10313.1.1 vs. uniprot
Match: A0A841A2D6_9HYPH (DUF4375 domain-containing protein n=2 Tax=Methylorubrum TaxID=2282523 RepID=A0A841A2D6_9HYPH)

HSP 1 Score: 108 bits (269), Expect = 6.820e-24
Identity = 82/222 (36.94%), Postives = 110/222 (49.55%), Query Frame = 1
Query:  169 AHLAQTHRNVLGNLAGKSQAERDALILARLD-WSTTATVPMLTLTTTDHAGLFNVFLETLDRHDLHDHAAALRATRDAF-PVWDTTARNRYEQWSDGRGQIRDALLDKALREQSHRFKSARPGLLQKAAVLLSDDPSFDD-YMARRSNAPDDRKLYFMLDELAACVPVGNAFDPDPDALTRVPPTIADFYVIHMLMLESMNGGFHQYIFNTTGALAPDMIAA 825
            A  A+    +   LA    AER  L+LA LD W+  AT        +D   L +  L+ LD   L  HAA LR     F P +  T   RY++WSDG G+IRDA LD AL   S RF+ A P LL +AA  ++  P     Y   RS A +D +L F+   L  C+   +A       L  +PP  A   V+ +   E +NG  HQ  FN++G LAPD++ A
Sbjct:   35 AGAAEMRAALARGLATFKPAERSVLVLAALDHWTGGATGLKGFFVLSDSVFLEDA-LQALDAEGLAGHAALLRKGAALFGPGYGGTQARRYDRWSDGHGEIRDAALDAALDRLSERFR-ALPRLLDEAAARIARSPELAALYEPLRSGADEDDRLAFLTGGLWTCLNHYDAPAAVAARLAALPPAHARIIVVRIFEAEMLNGSVHQAFFNSSGVLAPDVVDA 254          
BLAST of mRNA_C-australica_Contig_10313.1.1 vs. uniprot
Match: A0A2V3TZ17_9HYPH (Uncharacterized protein DUF4375 n=1 Tax=Methylobacterium sp. B4 TaxID=1938755 RepID=A0A2V3TZ17_9HYPH)

HSP 1 Score: 90.9 bits (224), Expect = 2.570e-17
Identity = 80/275 (29.09%), Postives = 113/275 (41.09%), Query Frame = 1
Query:   31 ALAMAQENNCPATHSLVYPLDDVLQSAAIALQYD---FNDTSGAEFGSE------AHLAQTHRNVLGNLAGKSQAERDALILARLDWSTTATVPMLTLTTTDHAGLFNVFLETLDRHDLHDHAAALRATRDAFPVWDTTARNRYEQWSDGRGQIRDALLDKALREQSHRFKSARPGLLQKAAVLLSDDPSFD-DYMARRSNAPDDRKLYFMLDELAACVPVGNAFDPDPDALTRVPPTIADFYVIHMLMLESMNGGFHQYIFNTTGALAPDMIAA 825
            A A     +C       YPL   +++ A+ L+     F D +G + G +      A  A+    +   LAG    ER  L+LA  D  T     +            +  LETLD   L +HAA +R     F     T   RY +WSDG G+IRD  LD AL   + RF+ A P  L +A   +   P     Y   R+    D +L F+   L  C+            L  +P       V  +   E +NG  HQ+ FN++G LAPD+  A
Sbjct:   30 ACAPTPTASCDLERLRHYPLAMAVENRALPLRLPDVFFPDPAGRDPGLDRDSLDAAGAAKLRAALERGLAGFRPGERPVLMLAAFDHWTAQGAGLKGFFVLPEGVFLDDVLETLDGAGLSEHAALVREGAALFGPRYGTQAERYARWSDGGGEIRDPALDAALDRLAERFR-ALPRPLDEAVRRVERSPDLAASYETLRAGTDADDRLRFLTGGLWRCLDHYGTPPAVAARLAALPTAHGRIIVTEIFQAEMLNGSVHQFFFNSSGGLAPDVADA 303          
BLAST of mRNA_C-australica_Contig_10313.1.1 vs. uniprot
Match: UPI001AE93211 (DUF4375 domain-containing protein n=1 Tax=Rhizobium herbae TaxID=508661 RepID=UPI001AE93211)

HSP 1 Score: 84.7 bits (208), Expect = 2.010e-15
Identity = 66/220 (30.00%), Postives = 98/220 (44.55%), Query Frame = 1
Query:  166 EAHLAQTHRNVLGNLAGKSQAERDALILARLDWSTTATVPMLTLTTTDHAGLFNVFLETLDRHDLHDHAAALRATRDAFPVWDTTARNR-YEQWSDGRGQIRDALLDKALREQSHRFKSARPGLLQKAAVLLSDDPSFDD-YMARRSNAPDDRKLYFMLDELAACVPVGNAFDPDPDALTRVPPTIADFYVIHMLMLESMNGGFHQYIFNTTGALAPDMI 819
            E    +   ++   LA  +  ER  L+L  +D  T     M      D        ++TL+   L  HAA  R  R A   WD +A    +   S+G G I D ++   L + S R+ +A P L++ AA  LSD       Y + RS A DD KL F+   L  C+           +L  +PP       I++ + E  NG  HQ+ +N +GALAPD++
Sbjct:   15 EEEAVKARASLADILAAFAPTERPILMLTAVDRWTDGPEGMRNFFFLDKGVFLGEVIKTLETAGLEAHAALFREGR-ALLDWDHSAPGENHSPLSNGNGDIVDPVVGARLDDLSRRY-NALPSLIEVAAQRLSDSTELSSMYESLRSEASDDLKLEFLASGLMNCLASPERPTNLLHSLAELPPAYTRLIAIYLFVAELENGSMHQFFYNDSGALAPDIV 232          
BLAST of mRNA_C-australica_Contig_10313.1.1 vs. uniprot
Match: UPI00135A1FED (DUF4375 domain-containing protein n=1 Tax=Rhodobacter flagellatus TaxID=2593021 RepID=UPI00135A1FED)

HSP 1 Score: 67.8 bits (164), Expect = 2.070e-9
Identity = 49/182 (26.92%), Postives = 77/182 (42.31%), Query Frame = 1
Query:  283 PMLTLTTTDHAGLFNVFLETLDRHDLHDHAAALRATRDAFPVWDTTARNRYEQWSDGRGQIRDALLDKALREQSHRFKSARPGLLQKAAVLLSDDPSFD-DYMARRSNAPDDRKLYFMLDELAA-CVPVGNAFDPDPDALTRVPPTIADFYVIHMLMLESMNGGFHQYIFNTTGALAPDMIA 822
            P+ +LT  + + +    +   +RH L   A  LR     +P WD     R       R  +   L   ALR  S     + P +L     L++ DP    ++ ARR  A   R++  +   L   C+      D    A   + P  AD  ++H  + ES NG  HQY +N++G +AP + A
Sbjct:   69 PLYSLTYLEPSTVLPEIVAAAERHGLSAEARYLRTPLTLWPDWDAGPAERMAD----RAVLDGGLRGLALRAASTALHGSEPRILAATEALIASDPGLAAEFEARRQGADRHRRVDHLAWRLITECLAGWWTPDEADAAFAEMGPAQADILLMHFFLAESFNGSAHQYFYNSSGTMAPQLAA 246          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10313.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI0014734C1C8.470e-18698.47DUF4375 domain-containing protein n=1 Tax=Roseovar... [more]
UPI001375887E4.160e-6743.70DUF4375 domain-containing protein n=1 Tax=Roseibiu... [more]
A0A841A2D6_9HYPH6.820e-2436.94DUF4375 domain-containing protein n=2 Tax=Methylor... [more]
A0A2V3TZ17_9HYPH2.570e-1729.09Uncharacterized protein DUF4375 n=1 Tax=Methylobac... [more]
UPI001AE932112.010e-1530.00DUF4375 domain-containing protein n=1 Tax=Rhizobiu... [more]
UPI00135A1FED2.070e-926.92DUF4375 domain-containing protein n=1 Tax=Rhodobac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10313contigC-australica_Contig_10313:3..827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size825
Hectar predicted targeting categorysignal peptide
Exons1
Cds size825
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586769.5680084-CDS-C-australica_Contig_10313:2..8271682586769.5680084-CDS-C-australica_Contig_10313:2..827Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10313 3..827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10313.1.1prot_C-australica_Contig_10313.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10313 3..827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10313.1.1

>prot_C-australica_Contig_10313.1.1 ID=prot_C-australica_Contig_10313.1.1|Name=mRNA_C-australica_Contig_10313.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=275bp
LVIIAFLSIPALAMAQENNCPATHSLVYPLDDVLQSAAIALQYDFNDTSG
AEFGSEAHLAQTHRNVLGNLAGKSQAERDALILARLDWSTTATVPMLTLT
TTDHAGLFNVFLETLDRHDLHDHAAALRATRDAFPVWDTTARNRYEQWSD
GRGQIRDALLDKALREQSHRFKSARPGLLQKAAVLLSDDPSFDDYMARRS
NAPDDRKLYFMLDELAACVPVGNAFDPDPDALTRVPPTIADFYVIHMLML
ESMNGGFHQYIFNTTGALAPDMIAA
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mRNA from alignment at C-australica_Contig_10313:3..827+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10313.1.1 ID=mRNA_C-australica_Contig_10313.1.1|Name=mRNA_C-australica_Contig_10313.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=825bp|location=Sequence derived from alignment at C-australica_Contig_10313:3..827+ (Chrysoparadoxa australica CS_1217)
CTCGTAATCATAGCTTTTCTATCAATACCCGCACTCGCCATGGCCCAGGA AAACAACTGTCCCGCTACTCATTCGCTGGTCTACCCGCTCGACGACGTGC TGCAAAGCGCGGCTATCGCACTCCAGTACGATTTTAATGACACGAGCGGT GCCGAGTTCGGATCCGAGGCCCATCTCGCCCAGACCCACCGCAACGTTCT GGGCAATCTGGCGGGCAAGTCGCAGGCCGAACGTGACGCGCTGATCCTTG CCCGTCTCGACTGGTCGACCACAGCGACAGTGCCAATGCTGACATTGACT ACGACAGACCACGCCGGGTTGTTCAACGTGTTTCTGGAAACGCTCGACCG ACACGATCTGCACGATCACGCCGCGGCTTTGCGCGCCACCCGCGACGCCT TCCCTGTCTGGGACACGACCGCGCGGAACCGCTATGAGCAGTGGAGCGAC GGGCGCGGACAAATCCGCGATGCCCTGCTGGACAAGGCTCTGCGCGAGCA GTCTCACAGATTCAAAAGCGCCCGACCAGGTCTGTTGCAGAAAGCCGCCG TGCTTCTGTCCGATGACCCGTCGTTCGACGATTACATGGCGCGGCGCAGC AACGCTCCCGACGACAGAAAATTGTACTTCATGCTCGACGAACTGGCAGC CTGCGTTCCTGTCGGAAACGCATTCGACCCAGACCCTGATGCGTTGACAC GGGTGCCCCCTACGATCGCCGATTTCTACGTGATCCACATGCTCATGCTC GAAAGCATGAATGGCGGCTTCCACCAGTATATCTTCAACACCACCGGCGC CCTCGCACCCGACATGATTGCTGCC
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Coding sequence (CDS) from alignment at C-australica_Contig_10313:3..827+

>mRNA_C-australica_Contig_10313.1.1 ID=mRNA_C-australica_Contig_10313.1.1|Name=mRNA_C-australica_Contig_10313.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=825bp|location=Sequence derived from alignment at C-australica_Contig_10313:3..827+ (Chrysoparadoxa australica CS_1217)
CTCGTAATCATAGCTTTTCTATCAATACCCGCACTCGCCATGGCCCAGGA
AAACAACTGTCCCGCTACTCATTCGCTGGTCTACCCGCTCGACGACGTGC
TGCAAAGCGCGGCTATCGCACTCCAGTACGATTTTAATGACACGAGCGGT
GCCGAGTTCGGATCCGAGGCCCATCTCGCCCAGACCCACCGCAACGTTCT
GGGCAATCTGGCGGGCAAGTCGCAGGCCGAACGTGACGCGCTGATCCTTG
CCCGTCTCGACTGGTCGACCACAGCGACAGTGCCAATGCTGACATTGACT
ACGACAGACCACGCCGGGTTGTTCAACGTGTTTCTGGAAACGCTCGACCG
ACACGATCTGCACGATCACGCCGCGGCTTTGCGCGCCACCCGCGACGCCT
TCCCTGTCTGGGACACGACCGCGCGGAACCGCTATGAGCAGTGGAGCGAC
GGGCGCGGACAAATCCGCGATGCCCTGCTGGACAAGGCTCTGCGCGAGCA
GTCTCACAGATTCAAAAGCGCCCGACCAGGTCTGTTGCAGAAAGCCGCCG
TGCTTCTGTCCGATGACCCGTCGTTCGACGATTACATGGCGCGGCGCAGC
AACGCTCCCGACGACAGAAAATTGTACTTCATGCTCGACGAACTGGCAGC
CTGCGTTCCTGTCGGAAACGCATTCGACCCAGACCCTGATGCGTTGACAC
GGGTGCCCCCTACGATCGCCGATTTCTACGTGATCCACATGCTCATGCTC
GAAAGCATGAATGGCGGCTTCCACCAGTATATCTTCAACACCACCGGCGC
CCTCGCACCCGACATGATTGCTGCC
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