mRNA_C-australica_Contig_103.13.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_103.13.1
Unique NamemRNA_C-australica_Contig_103.13.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_103.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_103contigC-australica_Contig_103:50865..53856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1735
Hectar predicted targeting categorysignal anchor
Exons10
Cds size1281
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_103.13.1prot_C-australica_Contig_103.13.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_103 51088..53519 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586765.5443325-UTR-C-australica_Contig_103:50864..509751682586765.5443325-UTR-C-australica_Contig_103:50864..50975Chrysoparadoxa australica CS_1217UTRC-australica_Contig_103 50865..50975 +
1682586765.5529375-UTR-C-australica_Contig_103:51081..510871682586765.5529375-UTR-C-australica_Contig_103:51081..51087Chrysoparadoxa australica CS_1217UTRC-australica_Contig_103 51082..51087 +
1682586765.6545446-UTR-C-australica_Contig_103:53519..538561682586765.6545446-UTR-C-australica_Contig_103:53519..53856Chrysoparadoxa australica CS_1217UTRC-australica_Contig_103 53520..53856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586765.5672004-CDS-C-australica_Contig_103:51087..511551682586765.5672004-CDS-C-australica_Contig_103:51087..51155Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 51088..51155 +
1682586765.5773253-CDS-C-australica_Contig_103:51235..513081682586765.5773253-CDS-C-australica_Contig_103:51235..51308Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 51236..51308 +
1682586765.586112-CDS-C-australica_Contig_103:51401..514761682586765.586112-CDS-C-australica_Contig_103:51401..51476Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 51402..51476 +
1682586765.595659-CDS-C-australica_Contig_103:51625..517031682586765.595659-CDS-C-australica_Contig_103:51625..51703Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 51626..51703 +
1682586765.6053185-CDS-C-australica_Contig_103:51899..520461682586765.6053185-CDS-C-australica_Contig_103:51899..52046Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 51900..52046 +
1682586765.6151826-CDS-C-australica_Contig_103:52189..522491682586765.6151826-CDS-C-australica_Contig_103:52189..52249Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 52190..52249 +
1682586765.6251874-CDS-C-australica_Contig_103:52373..524351682586765.6251874-CDS-C-australica_Contig_103:52373..52435Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 52374..52435 +
1682586765.6351562-CDS-C-australica_Contig_103:52682..528331682586765.6351562-CDS-C-australica_Contig_103:52682..52833Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 52683..52833 +
1682586765.6447873-CDS-C-australica_Contig_103:52952..535191682586765.6447873-CDS-C-australica_Contig_103:52952..53519Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 52953..53519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_103.13.1

>prot_C-australica_Contig_103.13.1 ID=prot_C-australica_Contig_103.13.1|Name=mRNA_C-australica_Contig_103.13.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=427bp
MKADWADMLPWERKWFCMMLVVSISDVVGLSLSVIALSASVTLLQQLVWG
VLGAGCAMSAAISANLAYEIVQNRSNNHRSLPYYRSLMAFRDAASFVQAL
FSGFLWLSGSPSPTFIIFLLAVSKGFLVVSVEQYQISLVDNSQTKTQRRM
RFRHRQHAPNEVAAIIKVQARVRMILATTRIHRMNEFRCWEQHCGKTQRT
MKVLFVLFLLIFSTATMFVNLAYCIVFDANTTRAWLLTVTTSVLLEIFLK
QPVKLAVQHIAATTLRRIKGGSRKEVRRSTAHGGDAKSASQRSTGNEAAT
VMAPAHSGGVKKDSSSIRPAAQRITVITPTHRGPEDQGQVEGRGSSANRG
TARGRIMSNEEHWHGGSDGLGQWQDKERGGAEGEMDKRSRRRREGGSAPP
SRERRGRNRRVREAGRGERSLPELGF*
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mRNA from alignment at C-australica_Contig_103:50865..53856+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_103.13.1 ID=mRNA_C-australica_Contig_103.13.1|Name=mRNA_C-australica_Contig_103.13.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2992bp|location=Sequence derived from alignment at C-australica_Contig_103:50865..53856+ (Chrysoparadoxa australica CS_1217)
CCAGCTACTCTGATCTTCCCCAAGCTTCTGGCAATAGCATCTGTCCCACC
AGCTTCTGCTACCCTTAAGCGACAATGGCGGGCAACACGCAGCATTGAAA
GTGCATCAAAGGTATTCTGAACAGCGCTAGTTCCAGCGGCCTAGAGTGGT
TGGTATGAGTGATCTCGAGCAATGCTTCAAAACAGCTCAAGCTCACTAGT
TGCGCTGCCCCTCTAAGGCTTCAATGAAGGCGGACTGGGCTGATATGCTC
CCATGGGAAAGGAAATGGTTCTGCATGATGCTGGTTGTTAGGTAAGATTC
ATTGCAGCTGCCCGTCTTCGTCCTGCTTATTTATTTGTCTCATCGCCATC
ATGCGGTGCTCTTATCGTCAGCATATCAGATGTGGTTGGGCTCAGCCTTT
CAGTAATTGCGCTGTCTGCCTCAGTAACTTTGCTCCAGCAACTGGTGAGA
TTACTGAACAGTAGCCTATGCTATCTTGAGAAAGTCCTAGTAGTAGCTGC
AACAGCTGGAGGCCGCCTGACACAACTCCCATCTTAGGTATGGGGTGTCC
TTGGTGCAGGATGTGCCATGAGCGCTGCAATATCTGCAAACCTCGCTTAT
GAAATTGTTCAGGTAGCGAATACTGCCTGCCAGCGATCCATACCCAATCT
TGCTTGTGCTAATACCATCTTCAGGGTCACCTAATGTGCACCTCTACAGC
ACCACACAATTGCCATTCTGCCTATCCCAACCAGTGCTAATATCCTTCTT
GCTTCATGCAGAACCGCAGCAACAACCACCGCAGCTTGCCGTACTATCGC
AGCTTAATGGCTTTCCGTGACGCAGCCTCTTTCGTACAGGCAAATAACAC
AGCGCAGGCCCCCTAATCCCGACCTGATCCTCTATGCTCTGTGACCATGT
AGCCAGCTAGTAGCTCAATCGCGTCACTCTCAAGGCTATAATATAGCTGC
TGCTTTCAATAGCCCTGTCCTAGTGCCCCACCCCTTTTTGCTTCACCTCT
CAAGCCTCACATGCTAAACCTCTACTTCAACATAGGCACTGTTCTCTGGC
TTCCTGTGGCTGAGTGGTTCTCCCTCGCCAACTTTCATCATCTTCTTGTT
AGCTGTCAGTAAGGGATTCTTGGTTGTTTCCGTTGAGCAATACCAGATTT
CCCTCGTCGACAACTCCCAAACGAAGACACAGGTCACTCGAATCAAGACC
TGATGCTCACCAGCCTCCCAAGCTAGGTTTTGGCCTAGGAGTCTGTCTCA
CTGATCCCAGTGTTTGCCAACTTGACTCCCTGACAGTCTCTTTGTTCTGC
CCTCTTGTTCTTGACAATGCACTAGCGACGCATGCGGTTCCGCCATCGGC
AACACGCTCCCAATGAGGTGGCAGCCATCATTAAGGTGAAAGCAGCTATT
TCATTTTGTGATTGCTCATTAAAGCTACAGCAGACTATAGCTATACAGCA
ATGGCAGCAGAGACGGGGCCGTCGAGTCTTTAATAATGATGCCTTTTCAT
CCTGAGCAGGTCCAAGCCAGAGTCAGAATGATACTTGCAACCACAAGGAT
CCACCGCATGAATGAGTTCAGGTGACCTCTCTCAAATGCCTAACAGTGCT
TAGACGCAGTTGCTGATCTAGTATGAGGCTATGCTATTTGTGCAGCACAA
CATGCTTTGATGCCATGCCATTCCATGCAACCCGCAATGCTCAGTGAGAT
GACGTGACATGGCTTGAAACAAACTTGTGGTGTGCAGCTAAGCGAAACGG
CGTTTCTGTGCTTCTCTCATACCACTCTGCTGACAAAGCTTGCCTTTACT
GCCTGCTGGGATTTTCAGATGCTGGGAGCAGCATTGTGGCAAGACTCAAC
GGACGATGAAGGTGCTGTTTGTTCTCTTCCTCCTCATCTTTTCAACGGCA
ACCATGTTTGTGAACCTGGCATATTGCATCGTCTTCGATGCCAATACAAC
AAGAGCATGGCTTCTTACGGTGAGTGAGACTGTCTCTGGTGTTTATTCTA
CACACAATGCGGGCATGGCTTAGTAGGCTGTGACCTCATTCCAGCTATCT
TGAAGCATTGTTAATGATCAGCTTCTCTCCCCTTTCAGGTTACAACATCT
GTACTGCTGGAAATATTCTTGAAACAACCTGTCAAACTTGCCGTGCAACA
TATAGCAGCTACTACCCTACGAAGAATCAAGGGAGGTTCCAGGAAGGAGG
TTCGGAGAAGTACAGCCCATGGTGGAGACGCCAAATCTGCATCTCAGAGA
AGTACCGGAAATGAAGCAGCCACTGTCATGGCTCCAGCACATAGTGGAGG
CGTCAAGAAGGACAGCAGCTCTATCAGACCTGCAGCTCAGAGAATTACTG
TGATCACTCCAACACATCGTGGTCCAGAGGATCAAGGACAAGTTGAAGGC
AGAGGGAGCTCTGCAAACAGAGGCACAGCAAGAGGTCGAATCATGAGCAA
CGAAGAGCATTGGCATGGTGGGAGCGACGGGCTGGGCCAGTGGCAAGACA
AGGAGAGAGGTGGTGCAGAGGGAGAGATGGACAAAAGATCAAGGAGACGG
CGAGAGGGTGGCTCCGCTCCCCCCTCCAGAGAAAGAAGAGGCAGGAATAG
AAGGGTCAGAGAGGCCGGAAGAGGAGAAAGGAGCCTGCCTGAGCTGGGGT
TTTAACCAGCAGCTGAAAATCCTTTGACCGCAGTGCAATAGTGCAACTGT
TCTTCATTTTGTTTTCGTGTTCAATTTTCAATCGCAAGGATATTATAATT
AGTGCGAATGGTTCTCAGAAGAGCGAACCAGACAGTCAGGTGTCAAACTC
CCGCTCACTTTGCACTTACTGTAGCCCTGCAACCAAGGGAGTGGGATGTG
CATGTCAGCAGAGGATGTGTCACCAGGGGCATCAAACAGCTGCAGCTTTT
TATGAGTCGTTGCCCCGGTTTGTCCCTGTCCGTGTGTTGCTAGTTACAGC
GCTGTCCTGGCTTCCTTTAGAGTTTAAAAGGGCACCCAATTC
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Coding sequence (CDS) from alignment at C-australica_Contig_103:50865..53856+

>mRNA_C-australica_Contig_103.13.1 ID=mRNA_C-australica_Contig_103.13.1|Name=mRNA_C-australica_Contig_103.13.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1281bp|location=Sequence derived from alignment at C-australica_Contig_103:50865..53856+ (Chrysoparadoxa australica CS_1217)
ATGAAGGCGGACTGGGCTGATATGCTCCCATGGGAAAGGAAATGGTTCTG
CATGATGCTGGTTGTTAGCATATCAGATGTGGTTGGGCTCAGCCTTTCAG
TAATTGCGCTGTCTGCCTCAGTAACTTTGCTCCAGCAACTGGTATGGGGT
GTCCTTGGTGCAGGATGTGCCATGAGCGCTGCAATATCTGCAAACCTCGC
TTATGAAATTGTTCAGAACCGCAGCAACAACCACCGCAGCTTGCCGTACT
ATCGCAGCTTAATGGCTTTCCGTGACGCAGCCTCTTTCGTACAGGCACTG
TTCTCTGGCTTCCTGTGGCTGAGTGGTTCTCCCTCGCCAACTTTCATCAT
CTTCTTGTTAGCTGTCAGTAAGGGATTCTTGGTTGTTTCCGTTGAGCAAT
ACCAGATTTCCCTCGTCGACAACTCCCAAACGAAGACACAGCGACGCATG
CGGTTCCGCCATCGGCAACACGCTCCCAATGAGGTGGCAGCCATCATTAA
GGTCCAAGCCAGAGTCAGAATGATACTTGCAACCACAAGGATCCACCGCA
TGAATGAGTTCAGATGCTGGGAGCAGCATTGTGGCAAGACTCAACGGACG
ATGAAGGTGCTGTTTGTTCTCTTCCTCCTCATCTTTTCAACGGCAACCAT
GTTTGTGAACCTGGCATATTGCATCGTCTTCGATGCCAATACAACAAGAG
CATGGCTTCTTACGGTTACAACATCTGTACTGCTGGAAATATTCTTGAAA
CAACCTGTCAAACTTGCCGTGCAACATATAGCAGCTACTACCCTACGAAG
AATCAAGGGAGGTTCCAGGAAGGAGGTTCGGAGAAGTACAGCCCATGGTG
GAGACGCCAAATCTGCATCTCAGAGAAGTACCGGAAATGAAGCAGCCACT
GTCATGGCTCCAGCACATAGTGGAGGCGTCAAGAAGGACAGCAGCTCTAT
CAGACCTGCAGCTCAGAGAATTACTGTGATCACTCCAACACATCGTGGTC
CAGAGGATCAAGGACAAGTTGAAGGCAGAGGGAGCTCTGCAAACAGAGGC
ACAGCAAGAGGTCGAATCATGAGCAACGAAGAGCATTGGCATGGTGGGAG
CGACGGGCTGGGCCAGTGGCAAGACAAGGAGAGAGGTGGTGCAGAGGGAG
AGATGGACAAAAGATCAAGGAGACGGCGAGAGGGTGGCTCCGCTCCCCCC
TCCAGAGAAAGAAGAGGCAGGAATAGAAGGGTCAGAGAGGCCGGAAGAGG
AGAAAGGAGCCTGCCTGAGCTGGGGTTTTAA
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