mRNA_C-australica_Contig_10297.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10297.1.1
Unique NamemRNA_C-australica_Contig_10297.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10297.1.1 vs. uniprot
Match: A0A2E2FKZ0_9FLAO (DUF4412 domain-containing protein n=1 Tax=Crocinitomicaceae bacterium TaxID=2026728 RepID=A0A2E2FKZ0_9FLAO)

HSP 1 Score: 80.5 bits (197), Expect = 1.870e-15
Identity = 50/133 (37.59%), Postives = 81/133 (60.90%), Query Frame = 1 
Query:   94 GMKTGIYMTEDELDESNPNNDEDEELDIEYLDETMEISGYECKKVIVRSSEGEVIMWVTEEIDFKPEHSQFTKKEVKGFPMKIETEQERGGVKTTVILTVTSVKEKIKKKDPYGLEIPSGYEELTLEQYKARM 492
            G K  I + E+E+++S    ++  +++IEY+DETME+ GYECKK I+++ E E+ ++ TE+I       QF   ++KGFP+  + E      K+ + + VT+ K + +K D    E   GYEE++LE YKA M
Sbjct:   96 GKKIKIALPEEEINKSK---EKAGDINIEYVDETMEVLGYECKKAIIKNGEDEITVFYTEKIPVPSIQEQFN--QLKGFPLYYQME------KSGMTINVTATKVEEEKVDKSEFEDLEGYEEMSLEDYKALM 217
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BLAST of mRNA_C-australica_Contig_10297.1.1 vs. uniprot
Match: A0A7Y7BHT9_9BACT (DUF4412 domain-containing protein n=1 Tax=Cytophagia bacterium TaxID=2026730 RepID=A0A7Y7BHT9_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 7.340e-12
Identity = 46/142 (32.39%), Postives = 83/142 (58.45%), Query Frame = 1 
Query:   58 KEKKGLQLN--EGGGMKTGIYMTEDELDESNPNNDEDEELDIEYLDETMEISGYECKKVIVRSSEGEVIMWVTEEIDFKPEHSQFTKKEVKGFPMKIETEQERGGVKTTVILTVTSVKEKIKKKDPYGLEIPSGYEELTLEQ 477
            K +KGL L   +  GM+  + + +++    N   +E +  ++ + +ET +I GY+CK+  V++   EV +W T +I     ++Q+T   +KG P++I T ++  GV  T+  T TSV +K   +  + L+IP GYEE+T+E+
Sbjct:   76 KAQKGLMLMSIDMMGMRIAVPIPKEDY---NKMQEETKTPEVRFTNETKDILGYKCKQAFVQNEGAEVEIWYTPKIIPANTNTQYTYAAIKGMPLEIHTRED--GV--TMTFTATSVSDKKINESEFSLDIPDGYEEMTMEE 210
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BLAST of mRNA_C-australica_Contig_10297.1.1 vs. uniprot
Match: A0A6N6MAV5_9FLAO (DUF4412 domain-containing protein n=1 Tax=Salibacter halophilus TaxID=1803916 RepID=A0A6N6MAV5_9FLAO)

HSP 1 Score: 63.2 bits (152), Expect = 4.440e-9
Identity = 40/111 (36.04%), Postives = 65/111 (58.56%), Query Frame = 1 
Query:  163 EELDIEYLDETMEISGYECKKVIVRSSEGEVIMWVTEEIDFKPEHSQFTKKEVKGFPMKIETEQERGGVKTTVILTVTSVKEKIKKKDPYGLEIPSGYEELTLEQYKARMK 495
            ++  I YLDET EI GYECKKV +   E   I WVT++I    ++     K++KGFP+  E   +  G++    + +T+VK + KK D     +PS YE++++E+ +  M+
Sbjct:  101 QDYQINYLDETKEIVGYECKKVEIIHDENVAIAWVTDKIKANTQNQ--LGKKLKGFPLSYEMSNQ--GME----MILTAVKVEKKKIDDDNFVVPSEYEKISMEEAQQMMQ 203
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BLAST of mRNA_C-australica_Contig_10297.1.1 vs. uniprot
Match: A0A1W9R1P0_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium 4484_276 TaxID=1970779 RepID=A0A1W9R1P0_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 2.510e-5
Identity = 42/131 (32.06%), Postives = 70/131 (53.44%), Query Frame = 1 
Query:  112 YMTEDELDESNPNNDEDEELDIEYLDETMEISGYECKKVIVRS--SEGEV----IMWVTEEIDFKPE--HSQFTKKEVKGFPMKIETEQERGGVKTTVILTVTSV-KEKIKKKDPYGLEIPSGYEELTLEQ 477
            +  E   DE     + + E++I++ DET EI+G+ CKK+I+++   +GE+      W TE++D  P    SQ   ++V G  ++ + +  RG     +  T T V K KI  KD     IP GY+++T E+
Sbjct:   96 FAIESSYDEIQKEFEREPEVEIDFTDETKEIAGHNCKKIIIKTINDDGEISNENFAWFTEDLDVGPNLNFSQKIFEDVNGLLLEYQMDMGRG---VMMKFTATEVEKRKIPTKD---FLIPEGYKKVTREE 220
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10297.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E2FKZ0_9FLAO1.870e-1537.59DUF4412 domain-containing protein n=1 Tax=Crocinit... [more]
A0A7Y7BHT9_9BACT7.340e-1232.39DUF4412 domain-containing protein n=1 Tax=Cytophag... [more]
A0A6N6MAV5_9FLAO4.440e-936.04DUF4412 domain-containing protein n=1 Tax=Salibact... [more]
A0A1W9R1P0_9BACT2.510e-532.06Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10297contigC-australica_Contig_10297:309..824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog755732.Fluta_1171
Model size516
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.45e-09
EggNOG OGs2DS3S@1|root,33EDT@2|Bacteria,4NY8U@976|Bacteroidetes,1I70J@117743|Flavobacteriia
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586765.3820562-CDS-C-australica_Contig_10297:308..8091682586765.3820562-CDS-C-australica_Contig_10297:308..809Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10297 309..809 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586765.3927827-UTR-C-australica_Contig_10297:809..8241682586765.3927827-UTR-C-australica_Contig_10297:809..824Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10297 810..824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10297.1.1prot_C-australica_Contig_10297.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10297 309..809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10297.1.1

>prot_C-australica_Contig_10297.1.1 ID=prot_C-australica_Contig_10297.1.1|Name=mRNA_C-australica_Contig_10297.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=167bp
MSTPFYISETRYNAKEKKGLQLNEGGGMKTGIYMTEDELDESNPNNDEDE
ELDIEYLDETMEISGYECKKVIVRSSEGEVIMWVTEEIDFKPEHSQFTKK
EVKGFPMKIETEQERGGVKTTVILTVTSVKEKIKKKDPYGLEIPSGYEEL
TLEQYKARMKKFGMGQ*
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mRNA from alignment at C-australica_Contig_10297:309..824-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10297.1.1 ID=mRNA_C-australica_Contig_10297.1.1|Name=mRNA_C-australica_Contig_10297.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=516bp|location=Sequence derived from alignment at C-australica_Contig_10297:309..824- (Chrysoparadoxa australica CS_1217)
AACTACAATTACAAAATGTCTACCCCGTTTTATATTTCCGAAACCCGTTA
CAATGCCAAGGAGAAAAAAGGGTTGCAACTCAATGAGGGAGGCGGCATGA
AAACAGGAATCTACATGACCGAAGATGAGCTTGATGAATCCAACCCAAAC
AATGATGAAGACGAAGAACTAGACATTGAATATTTGGATGAAACCATGGA
GATCAGTGGTTATGAGTGCAAGAAGGTCATTGTACGTTCATCGGAAGGTG
AAGTGATCATGTGGGTAACCGAAGAAATCGACTTTAAGCCAGAGCATAGT
CAGTTTACGAAGAAAGAGGTAAAAGGCTTCCCGATGAAGATCGAAACAGA
ACAAGAGCGTGGCGGAGTAAAAACCACAGTGATATTAACTGTGACTAGCG
TAAAGGAAAAAATCAAGAAAAAAGATCCATATGGATTGGAGATCCCTTCA
GGTTATGAAGAGTTGACACTTGAACAATACAAAGCAAGAATGAAGAAATT
TGGAATGGGTCAGTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_10297:309..824-

>mRNA_C-australica_Contig_10297.1.1 ID=mRNA_C-australica_Contig_10297.1.1|Name=mRNA_C-australica_Contig_10297.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=501bp|location=Sequence derived from alignment at C-australica_Contig_10297:309..824- (Chrysoparadoxa australica CS_1217)
ATGTCTACCCCGTTTTATATTTCCGAAACCCGTTACAATGCCAAGGAGAA
AAAAGGGTTGCAACTCAATGAGGGAGGCGGCATGAAAACAGGAATCTACA
TGACCGAAGATGAGCTTGATGAATCCAACCCAAACAATGATGAAGACGAA
GAACTAGACATTGAATATTTGGATGAAACCATGGAGATCAGTGGTTATGA
GTGCAAGAAGGTCATTGTACGTTCATCGGAAGGTGAAGTGATCATGTGGG
TAACCGAAGAAATCGACTTTAAGCCAGAGCATAGTCAGTTTACGAAGAAA
GAGGTAAAAGGCTTCCCGATGAAGATCGAAACAGAACAAGAGCGTGGCGG
AGTAAAAACCACAGTGATATTAACTGTGACTAGCGTAAAGGAAAAAATCA
AGAAAAAAGATCCATATGGATTGGAGATCCCTTCAGGTTATGAAGAGTTG
ACACTTGAACAATACAAAGCAAGAATGAAGAAATTTGGAATGGGTCAGTA
A
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