mRNA_C-australica_Contig_10233.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10233.1.1
Unique NamemRNA_C-australica_Contig_10233.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: UPI00034A927C (ATP-dependent RecD-like DNA helicase n=4 Tax=Nocardiopsis TaxID=2013 RepID=UPI00034A927C)

HSP 1 Score: 72.8 bits (177), Expect = 5.120e-12
Identity = 44/141 (31.21%), Postives = 67/141 (47.52%), Query Frame = 1
Query:    1 GMADKVIQGTLKRVEWRSP-TGVQILLVD-GEDGEAFWAFAQEQRVYVGERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQAL--ACDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAW 411
            G    V+QG L+RV + +   G  +  VD G  G+          V  GE + + G W + P  GR  HV    +  P + QG+  Y+   L       +A  IV  FG   + V++++P+RL++VPG+G       ADAW
Sbjct:    5 GPRGAVVQGVLERVTYANEENGFTVARVDTGRGGDLLTVVGSLMGVQPGESLRMRGRWGSHPQYGRQFHVDDYTTVLPATVQGIRRYLGSGLIKGIGPKMAERIVEHFGTDALEVVEEEPDRLIEVPGLGPKRTAAIADAW 145          
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: A0A841IQA8_9ACTN (ATP-dependent RecD-like DNA helicase n=2 Tax=Nocardiopsis algeriensis TaxID=1478215 RepID=A0A841IQA8_9ACTN)

HSP 1 Score: 72.8 bits (177), Expect = 5.140e-12
Identity = 46/156 (29.49%), Postives = 75/156 (48.08%), Query Frame = 1
Query:   16 VIQGTLKRVEWRSP-TGVQILLVD-GEDG-EAFWAFAQEQRVYVGERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQAL--ACDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRRSRTHSQSQRVMERMGLN 468
            V+QG L+R+ + +  TG  +  VD G  G +          V  GE + + G W + P  GR  HV    +  P + QG+  Y+   L       +A  IV  FG   + V++D+PERL++VPG+G       ADAW   +   +    ++ +G++
Sbjct:   12 VVQGVLERITYANEDTGYTVARVDTGRGGSDLLTVVGSLMGVQPGEALRMQGRWGSHPQYGRQFHVDDYTTVLPATVQGIRRYLGSGLIKGIGPKMAERIVEHFGTDALDVIEDEPERLIEVPGLGPKRTRLIADAWEEQKAIKEVMVFLQGVGVS 167          
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: UPI0007C69029 (ATP-dependent RecD-like DNA helicase n=2 Tax=Nonomuraea TaxID=83681 RepID=UPI0007C69029)

HSP 1 Score: 70.5 bits (171), Expect = 3.240e-11
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 1
Query:  130 VYVGERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQAL--ACDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRRSRTHSQSQRVMERMGLN 468
            V  GER++L G W + P  GR L V ++    P S + +T Y+   L       +A+AIVSQFG+ T+ V+D +PERL DV  IG     +  +AW   +  ++   V++  G++
Sbjct:   41 VQPGERLQLGGEWESHPRFGRRLAVKQVERVAPSSVRAITLYLGSGLIRGVGPRLAHAIVSQFGEQTLKVIDTEPERLRDVVNIGAIRQAQIVEAWAEQKAVAELMVVLQGFGVS 155          
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: A9WGW5_CHLAA (ATP-dependent RecD-like DNA helicase n=3 Tax=Chloroflexi TaxID=200795 RepID=A9WGW5_CHLAA)

HSP 1 Score: 70.1 bits (170), Expect = 4.420e-11
Identity = 40/114 (35.09%), Postives = 56/114 (49.12%), Query Frame = 1
Query:  130 VYVGERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQAL--ACDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRRSRTHSQSQRVMERMGL 465
            V  GE++ L G W   P  GR  HV R  S  P +  G+  Y+   L       +A  I   FG  T+ VLD +PERL +VPG+GR      A+AWR  +       +++ +GL
Sbjct:   43 VQPGEQLSLEGEWRDHPTHGRQFHVQRYRSRLPATVDGIRRYLGSGLIKGVGPVLAKRITETFGKYTLEVLDREPERLSEVPGLGRKKAVLIAEAWRAQQRIKDLMLLLQDLGL 156          
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: A0A2E5HPM6_9DELT (ATP-dependent RecD-like DNA helicase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E5HPM6_9DELT)

HSP 1 Score: 68.9 bits (167), Expect = 1.120e-10
Identity = 45/144 (31.25%), Postives = 74/144 (51.39%), Query Frame = 1
Query:   19 IQGTLKRVEWRSPTGVQILLVDGEDGEAFWAFAQEQRVYV---------GERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQALA--CDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRR 417
            I+GTL+R+++ +  G   +    E+      F +   V V         GE+++L GSW   P  G    V  + +  P SA+G+  Y+   L       +A+ +V +FGD T+ V+D++PERL +V GIG+  +   A AW+R
Sbjct:    4 IEGTLERIKYSNDEGSWCVAQLREETSGETLFKRPTLVTVVGNLLGARPGEQLKLWGSWKRHPSFGLQFDVRTVKTDVPVSAKGIEIYLGSGLVQGIGPKLASRLVEKFGDKTLDVIDNEPERLSEVEGIGQVRIERIAAAWKR 147          
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: A0A2V2FN29_9FIRM (ATP-dependent RecD-like DNA helicase n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A2V2FN29_9FIRM)

HSP 1 Score: 68.9 bits (167), Expect = 1.120e-10
Identity = 43/152 (28.29%), Postives = 74/152 (48.68%), Query Frame = 1
Query:   19 IQGTLKRVEWRSP-TGVQILLVDGEDGEAFWAFAQEQRVYVGERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQAL--ACDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRRSRTHSQSQRVMERMGL 465
            I+GT+K + +R+   G  +L +    G+   A        VGER+E++G+W   P  GR        +  P +   L +Y+   L      + A  IV+ FG  T+ VL+++P+RL +VPGIGR    + A+++   R        ++  G+
Sbjct:   20 IKGTVKSIIFRNEENGYTVLELVDATGDEITAVGALPLASVGERIEITGTWTEHPTYGRQFRAQGCRTLAPATLSALVNYLGSGLIRGVGESTAREIVNTFGTDTLAVLENEPQRLTEVPGIGRLRAAKIAESFAAQRDMRDIMLALQEFGV 171          
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: A0A2E7UP43_9DELT (ATP-dependent RecD-like DNA helicase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7UP43_9DELT)

HSP 1 Score: 68.6 bits (166), Expect = 1.520e-10
Identity = 43/155 (27.74%), Postives = 69/155 (44.52%), Query Frame = 1
Query:   10 DKVIQGTLKRVEWRSPTG-VQILLVDGEDGEAFWAFAQEQRVYVGERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQALA--CDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRRSRTHSQSQRVMERMGL 465
            +  ++G L    W S  G   I  + G D     A      +  G+ + L G W      GR      +V   PKS  GL  Y+S         T A  +V  FG+ T+ ++D++P+RL++V GIG+  V    + W+  R H +   V+  +G+
Sbjct:    4 ENTLEGELIGFRWVSDDGSFAIARLRGPDQREVVAVGPLGHIQPGQHMTLRGHWETRSMFGRQFRARSVVVEDPKSLLGLERYLSDGAVKGLGPTFARRVVDHFGNDTLRIIDEEPQRLMEVSGIGKKRVATITEHWQTGRIHRELHTVLRGLGI 158          
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: A0A7V4GHG1_9DELT (ATP-dependent RecD-like DNA helicase n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A7V4GHG1_9DELT)

HSP 1 Score: 68.6 bits (166), Expect = 1.520e-10
Identity = 48/154 (31.17%), Postives = 74/154 (48.05%), Query Frame = 1
Query:   19 IQGTLKRVEWRSP-TGVQILLVDGEDG-EAFWAFAQEQRVYVGERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQAL--ACDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRRSRTHSQSQRVMERMGLN 468
            I+GT++RV +RS  +G  +L V  + G E            VGE + L G W   P  G    V    S  P +  GL  Y+   L       +A  IV+ FG+ T+ VL+++PERL +V G+G   V    +AWR  R   ++   ++  G++
Sbjct:    4 IRGTVERVTFRSEESGYAVLRVLPDGGSEPVTVVGNVGAAQVGEELSLRGRWVRNPRFGPQFEVETYRSVVPATLAGLQRYLGSGLIRGIGKELARRIVATFGEETLAVLEERPERLAEVEGLGPKRVERVREAWREQRVVKEAMIFLQSHGIS 157          
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: A0A840QEX7_9PSEU (ATP-dependent RecD-like DNA helicase n=4 Tax=Saccharopolyspora TaxID=1835 RepID=A0A840QEX7_9PSEU)

HSP 1 Score: 68.6 bits (166), Expect = 1.520e-10
Identity = 42/154 (27.27%), Postives = 70/154 (45.45%), Query Frame = 1
Query:   16 VIQGTLKRVEWRSP-TGVQILLVDGEDGEAFWAFAQEQRVYVGERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQAL--ACDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRRSRTHSQSQRVMERMGLN 468
            V++GTL+R+ + +  TG  +  +D   G              GE + + G W A P  GR  HV    +  P + QG+  Y+   L       +A  IV  FG   + V++  PERL++VP +G       ADAW   +   +    ++ +G++
Sbjct:   12 VLEGTLERITFANEDTGYTVARIDAGRGNLVTVVGALLGAQPGEALRMRGRWGAHPQYGRQFHVDDYRTVLPATVQGIRRYLGSGLIKGIGPKLAEKIVDHFGTDALEVIEQTPERLIEVPKLGPKRTKLIADAWEEQKAIKEVMVFLQGVGVS 165          
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: A0A2E6ETA7_9RICK (ATP-dependent RecD-like DNA helicase n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E6ETA7_9RICK)

HSP 1 Score: 68.2 bits (165), Expect = 2.070e-10
Identity = 39/115 (33.91%), Postives = 62/115 (53.91%), Query Frame = 1
Query:  130 VYVGERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVS--QALACDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRRSRTHSQSQRVMERMGLN 468
            V VG+R+ L G W   P  GR   V   +   P++A+GL  Y++  +       +A  IV+ FGD T+ VLD+ PERL++V GIG   +    ++WR  R    +   ++ +GL+
Sbjct:   53 VEVGDRLRLQGHWVTDPRYGRQFAVESYLPVLPETAEGLERYLAGQRVQGIGRVVAKRIVAHFGDSTLKVLDEHPERLLEVEGIGPGRLGRVIESWRLHRGERDAVIFLQGLGLS 167          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00034A927C5.120e-1231.21ATP-dependent RecD-like DNA helicase n=4 Tax=Nocar... [more]
A0A841IQA8_9ACTN5.140e-1229.49ATP-dependent RecD-like DNA helicase n=2 Tax=Nocar... [more]
UPI0007C690293.240e-1134.78ATP-dependent RecD-like DNA helicase n=2 Tax=Nonom... [more]
A9WGW5_CHLAA4.420e-1135.09ATP-dependent RecD-like DNA helicase n=3 Tax=Chlor... [more]
A0A2E5HPM6_9DELT1.120e-1031.25ATP-dependent RecD-like DNA helicase n=1 Tax=Myxoc... [more]
A0A2V2FN29_9FIRM1.120e-1028.29ATP-dependent RecD-like DNA helicase n=1 Tax=Clost... [more]
A0A2E7UP43_9DELT1.520e-1027.74ATP-dependent RecD-like DNA helicase n=1 Tax=Delta... [more]
A0A7V4GHG1_9DELT1.520e-1031.17ATP-dependent RecD-like DNA helicase n=2 Tax=Delta... [more]
A0A840QEX7_9PSEU1.520e-1027.27ATP-dependent RecD-like DNA helicase n=4 Tax=Sacch... [more]
A0A2E6ETA7_9RICK2.070e-1033.91ATP-dependent RecD-like DNA helicase n=1 Tax=Ricke... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10233contigC-australica_Contig_10233:365..832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1246474.ANBE01000009_gene403
Preferred namerecD2
PFAMsAAA_30,HHH_4,HHH_5,UvrD_C_2
Model size468
Max annot lvl201174|Actinobacteria
KEGG koko:K03581
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.81e-12
EggNOG OGsCOG0507@1|root,COG0507@2|Bacteria,2GJRK@201174|Actinobacteria,4EHE2@85012|Streptosporangiales
EC3.1.11.5
DescriptionDNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity
Cds size465
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586761.1388628-UTR-C-australica_Contig_10233:364..3671682586761.1388628-UTR-C-australica_Contig_10233:364..367Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10233 365..367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586761.1513917-CDS-C-australica_Contig_10233:367..8321682586761.1513917-CDS-C-australica_Contig_10233:367..832Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10233 368..832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10233.1.1prot_C-australica_Contig_10233.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10233 368..832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10233.1.1

>prot_C-australica_Contig_10233.1.1 ID=prot_C-australica_Contig_10233.1.1|Name=mRNA_C-australica_Contig_10233.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=155bp
MADKVIQGTLKRVEWRSPTGVQILLVDGEDGEAFWAFAQEQRVYVGERVE
LSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQALACDTTIANAIV
SQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRRSRTHSQSQRVME
RMGLN
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mRNA from alignment at C-australica_Contig_10233:365..832+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10233.1.1 ID=mRNA_C-australica_Contig_10233.1.1|Name=mRNA_C-australica_Contig_10233.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=468bp|location=Sequence derived from alignment at C-australica_Contig_10233:365..832+ (Chrysoparadoxa australica CS_1217)
GGCATGGCCGACAAGGTGATACAGGGCACCCTGAAGCGGGTGGAATGGCG CTCGCCCACCGGCGTGCAGATCCTTCTGGTCGACGGTGAGGATGGTGAAG CCTTCTGGGCATTCGCCCAGGAGCAGCGTGTCTATGTCGGAGAGCGGGTC GAGCTATCCGGAAGCTGGAATGCCGCGCCACCCCCCGGCCGGGTACTTCA CGTATCGCGGCTGGTCTCCACGCCGCCGAAGTCTGCCCAGGGCCTGACGG ATTACGTGAGCCAGGCGCTGGCCTGCGACACCACCATCGCCAACGCCATC GTGTCCCAGTTCGGCGATCTCACCGTGACCGTGCTGGACGACAAGCCGGA GCGTCTGGTGGATGTACCGGGAATCGGTCGGGCTGCGGTACCGGAATTCG CCGACGCCTGGCGCCGGTCGCGAACCCACAGCCAGAGCCAGCGCGTGATG GAACGCATGGGCCTGAAC
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Coding sequence (CDS) from alignment at C-australica_Contig_10233:365..832+

>mRNA_C-australica_Contig_10233.1.1 ID=mRNA_C-australica_Contig_10233.1.1|Name=mRNA_C-australica_Contig_10233.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=465bp|location=Sequence derived from alignment at C-australica_Contig_10233:365..832+ (Chrysoparadoxa australica CS_1217)
ATGGCCGACAAGGTGATACAGGGCACCCTGAAGCGGGTGGAATGGCGCTC
GCCCACCGGCGTGCAGATCCTTCTGGTCGACGGTGAGGATGGTGAAGCCT
TCTGGGCATTCGCCCAGGAGCAGCGTGTCTATGTCGGAGAGCGGGTCGAG
CTATCCGGAAGCTGGAATGCCGCGCCACCCCCCGGCCGGGTACTTCACGT
ATCGCGGCTGGTCTCCACGCCGCCGAAGTCTGCCCAGGGCCTGACGGATT
ACGTGAGCCAGGCGCTGGCCTGCGACACCACCATCGCCAACGCCATCGTG
TCCCAGTTCGGCGATCTCACCGTGACCGTGCTGGACGACAAGCCGGAGCG
TCTGGTGGATGTACCGGGAATCGGTCGGGCTGCGGTACCGGAATTCGCCG
ACGCCTGGCGCCGGTCGCGAACCCACAGCCAGAGCCAGCGCGTGATGGAA
CGCATGGGCCTGAAC
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