mRNA_C-australica_Contig_1022.13.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1022.13.1
Unique NamemRNA_C-australica_Contig_1022.13.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: D8LC27_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC27_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.770e-21
Identity = 76/169 (44.97%), Postives = 95/169 (56.21%), Query Frame = 1
Query:  211 VDYEALKASAGVSEKGGEISMSVEETNKIRAELGLKPLNLG------PSKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEKLQGETLGQPAEGGG---SAADWVKKSXXXXXXXXXXXXXXXXXXXXXAEQ---------DDAG---TAYGADDLTGLKV 654
            VD E +K +    E  GEISMSVEETN++RA LGLKPLN+G      P++++ AVENMRLK+E E+     +E+E RL KAR KR LNEKL+G+TLG+   G     SAADWV +S                      EQ         D  G    AYGA++L GLKV
Sbjct:  120 VDVEKIKPNT--EENKGEISMSVEETNRVRAMLGLKPLNVGGSASGKPTEEEIAVENMRLKREEEEQARELKELETRLQKARTKRQLNEKLKGDTLGEVKPGDEEVVSAADWVNRSRKKAVAMEEERLLARQRERILEEQEMELANGGGDGDGRRKAAYGAENLAGLKV 286          
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: A0A836C9M6_9STRA (SART-1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9M6_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.140e-19
Identity = 61/113 (53.98%), Postives = 79/113 (69.91%), Query Frame = 1
Query:  205 GEVDYEALKASAGVSEKGGEISMSVEETNKIRAELGLKPLNLGPSKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEKLQGETLG--QPAEGGG--SAADWVKKS 531
            G+V YE +K +  VSE  GEISMS+EETN++RA LGL+PL +G SK+ +AV+N+R KKE E       ++E RL KAR +R L+E+L+G TLG  Q  E G   SAADWV KS
Sbjct:   73 GDVVYEKIKPA--VSESNGEISMSIEETNRVRAMLGLRPLAVGNSKEQQAVDNLRRKKEEEAKVRELADIEARLAKARNRRQLHERLKGSTLGEVQAGEDGSVLSAADWVGKS 183          
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: A0A7S3URM7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URM7_HETAK)

HSP 1 Score: 88.6 bits (218), Expect = 1.320e-17
Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  256 GGEISMSVEETNKIRAELGLKPLNLGP----SKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEKLQGETLGQPAEGG---GSAADWVKKS 531
            G E+S S+EETN+IRA LGLKPL L      S +  AV+NMR KKE E  Q    E+E R+ +AR+KR LNEKL+G+ LG+ AEG    GSAADWV++S
Sbjct:    1 GEEVSCSIEETNRIRAALGLKPLKLEKGDEQSAEQIAVDNMRKKKEEEGRQRELAEIEARIARARKKRALNEKLEGKRLGELAEGEQEIGSAADWVRRS 99          
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: K3X7K2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7K2_GLOUD)

HSP 1 Score: 85.9 bits (211), Expect = 7.150e-16
Identity = 47/100 (47.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:  238 AGVSEKGGEISMSVEETNKIRAELGLKPLNLGPSKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEKLQGETLGQP--AEGGGSAADWVKKS 531
            A   EK GEISMS+EETN++RA LGLKPL+LGP K D  V N++   E  D + A  +++K++ ++++KR L +KL G+++G+   A    SA DWVK+S
Sbjct:  101 ANTVEKNGEISMSIEETNRVRAALGLKPLSLGPKKKDANVVNLQKTSEQVDEERAREDLQKKIAQSKKKRELTQKLAGQSIGEQLKASASSSALDWVKQS 200          
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: A0A833WBH8_PHYIN (SART-1 family n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WBH8_PHYIN)

HSP 1 Score: 76.3 bits (186), Expect = 1.740e-12
Identity = 42/105 (40.00%), Postives = 70/105 (66.67%), Query Frame = 1
Query:  238 AGVSEKGGEISMSVEETNKIRAELGLKPLNLGPSKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEKLQGETLGQPAEG-------GGSAADWVKKS 531
            A   +K GEIS+S+EETNK+R  LGLKPL++GPSK +++V N++      DA+   +E++K+L +++ +R L +K+ G++LG+  +        G  A +WVK+S
Sbjct:   22 ASSEDKSGEISLSIEETNKLRISLGLKPLSVGPSKKEQSVVNVQKTSAQLDAERKQQELKKKLQQSKTRRELTQKIAGKSLGEQLKADLEAQKKGNDALEWVKQS 126          
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: A0A8K1CWD9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CWD9_PYTOL)

HSP 1 Score: 76.3 bits (186), Expect = 1.770e-12
Identity = 62/138 (44.93%), Postives = 88/138 (63.77%), Query Frame = 1
Query:  247 SEKGGEISMSVEETNKIRAELGLKPLNLGPSKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEKLQGETLGQPAE--GGGSAADWVKKSXXXXXXXXXXXXXXXXXXXXXAEQDDAGTAYGADDLTGLKV 654
            +E+ GEISMS+EETNK+R  LGLKPL++GP K+   V N++   E    +    E++K L+++RRKR L +KL G+++GQ  +     SA DWVK+S      XXXXXXXXXX      +++  GT+Y A  L G+ V
Sbjct:   85 TEENGEISMSIEETNKLRISLGLKPLSVGPKKEKNLV-NLQKTSEQLAEEKERDEIKKALEQSRRKRELTQKLAGKSIGQELKESAASSALDWVKQSRQSAAQXXXXXXXXXXK-----QKEAEGTSYDASALAGMTV 216          
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: A0A7S1XUI2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUI2_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.120e-11
Identity = 57/141 (40.43%), Postives = 74/141 (52.48%), Query Frame = 1
Query:  238 AGVSEKGGEISMSVEETNKIRAELGLKPLNLGP--SKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEKLQGETLGQPAEGGGSAADWVKKSXXXXXXXXXXXXXXXXXXXXXAEQDDAGTAYGADDLTGLKV 654
            A V+EKGGEIS SVEETN++RA LGLKPL  G   SKD+ AVEN +  KE E A+  A+E           R  N K++G TLG   +G  S A WV++S                     A + + G  Y + DL G++V
Sbjct:   12 AQVTEKGGEISASVEETNRVRALLGLKPLRTGKEKSKDEIAVENFKRVKEEEAAKKRAQEAXXXXXXXXXXRERNAKIEGPTLGDGDDGVSSVA-WVQRSRAKAKEQEARKKEALER----AAKGEVGADYTSSDLVGMEV 147          
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: A0A7S1CFK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFK3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.690e-11
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  238 AGVSEKGGEISMSVEETNKIRAELGLKPL------NLGPSKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEKLQGETLGQPAEGG 501
            A VSE GGE+S S+ ETN+IRA LGLKPL      +  PSK+++AVE  + + E         ++E RL +AR+KR LN KLQG++LG+   GG
Sbjct:  128 AQVSEGGGEVSCSIAETNRIRAALGLKPLEGVGGASAQPSKEERAVEEHKTQIEERRRAEERADIEARLARARKKRELNAKLQGQSLGEMLAGG 221          
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: A0A329SND0_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SND0_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.660e-11
Identity = 41/101 (40.59%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  250 EKGGEISMSVEETNKIRAELGLKPLNLGPSKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEKLQGETLGQPAEG-------GGSAADWVKKS 531
            +K GEIS+S+EETNK+R  LGLKPL++GPSK ++AV +++      DA+   + ++K+L +++ +R L +KL G++LG+  +        G  A +WVK+S
Sbjct:   51 DKSGEISLSIEETNKLRISLGLKPLSVGPSKKEQAVVSVQKTSAQLDAEREQQALKKKLQQSKTRRELTQKLAGKSLGEQLKADLEAEKKGHDALEWVKQS 151          
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: A0A7S1E0I7_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1E0I7_HEMAN)

HSP 1 Score: 70.1 bits (170), Expect = 1.320e-10
Identity = 44/103 (42.72%), Postives = 67/103 (65.05%), Query Frame = 1
Query:  244 VSEKGGEISMSVEETNKIRAELGLKPLNLGPSKD------DKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEK-LQGETLGQPAEGGGSAADWVKKS 531
            V++ GGEISMS+EETNK+RA LGLKPL+L PSK       D  ++ +R K EA DA+  A  + K++   +++RL  +K +  +TLG+ ++     A+WV K+
Sbjct:   10 VTDSGGEISMSIEETNKVRASLGLKPLDLAPSKPLKEGSKDAPIDAVREKAEA-DAEKEAEAMRKKIADMKKQRLSQKKVMSAKTLGEGSDDDDDVANWVSKA 111          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC27_ECTSI1.770e-2144.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C9M6_9STRA3.140e-1953.98SART-1 family-domain-containing protein n=1 Tax=Tr... [more]
A0A7S3URM7_HETAK1.320e-1755.56Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K3X7K2_GLOUD7.150e-1647.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A833WBH8_PHYIN1.740e-1240.00SART-1 family n=1 Tax=Phytophthora infestans TaxID... [more]
A0A8K1CWD9_PYTOL1.770e-1244.93Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1XUI2_9STRA1.120e-1140.43Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1CFK3_9STRA2.690e-1147.87Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A329SND0_9STRA3.660e-1140.59Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A7S1E0I7_HEMAN1.320e-1042.72Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1022contigC-australica_Contig_1022:15597..16685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LC27
Preferred nameSART1
PFAMsSART-1
Model size654
Max annot lvl2759|Eukaryota
KEGG koko:K01301,ko:K11984,ko:K12811,ko:K12836,ko:K12858
KEGG Pathwayko03040,ko05131,map03040,map05131
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0000481,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005794,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0012505,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016604,GO:0016607,GO:0019222,GO:0022407,GO:0022409,GO:0022607,GO:0022613,GO:0022618,GO:0030155,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0045580,GO:0045582,GO:0045583,GO:0045585,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045785,GO:0046483,GO:0046540,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0051094,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902105,GO:1902107,GO:1902494,GO:1903037,GO:1903039,GO:1903706,GO:1903708,GO:1990904,GO:2000026
Exons3
Evalue2.9e-22
EggNOG OGsKOG2217@1|root,KOG2217@2759|Eukaryota
EC3.4.17.21,3.6.4.13
Descriptionmaturation of 5S rRNA
Cds size654
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03041,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586759.7610636-CDS-C-australica_Contig_1022:15596..158961682586759.7610636-CDS-C-australica_Contig_1022:15596..15896Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1022 15597..15896 +
1682586759.7723024-CDS-C-australica_Contig_1022:16140..163261682586759.7723024-CDS-C-australica_Contig_1022:16140..16326Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1022 16141..16326 +
1682586759.7819567-CDS-C-australica_Contig_1022:16517..166851682586759.7819567-CDS-C-australica_Contig_1022:16517..16685Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1022 16518..16685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1022.13.1prot_C-australica_Contig_1022.13.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1022 15597..16685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1022.13.1

>prot_C-australica_Contig_1022.13.1 ID=prot_C-australica_Contig_1022.13.1|Name=mRNA_C-australica_Contig_1022.13.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=218bp
RSRSNDRSRRGKRSRSRSRGRERSRSRSRSRSRGRDRGRDRGRSRDRSYD
RGHERSRSPVKRKAKVMDGEVDYEALKASAGVSEKGGEISMSVEETNKIR
AELGLKPLNLGPSKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRL
LNEKLQGETLGQPAEGGGSAADWVKKSRAAAAKQKEEKLLAEKRALLLAE
QDDAGTAYGADDLTGLKV
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mRNA from alignment at C-australica_Contig_1022:15597..16685+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1022.13.1 ID=mRNA_C-australica_Contig_1022.13.1|Name=mRNA_C-australica_Contig_1022.13.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1089bp|location=Sequence derived from alignment at C-australica_Contig_1022:15597..16685+ (Chrysoparadoxa australica CS_1217)
AGGTCTAGGTCTAATGACCGCAGTAGGCGTGGCAAAAGGTCCCGTTCCCG GTCCAGGGGAAGAGAGAGATCTAGGTCCAGGTCCAGGTCCAGGTCAAGGG GCAGGGACCGTGGTAGAGACAGGGGCCGGAGCCGTGATAGGAGCTATGAC AGGGGCCATGAGAGGTCCCGGTCTCCAGTGAAACGCAAGGCCAAAGTAAT GGATGGTGAAGTGGACTATGAAGCTCTTAAGGCCTCTGCTGGAGTCTCGG AGAAGGGGGGAGAGATCAGCATGTCTGTAGAGGAAACGAACAAGATAAGG GTATGGCCTCAGCTCCCTACTCTCATTCTCCTTTCTCCACAACATGCAGC ACGACAATAATGTATTTCCTCAGTGCAACCCACCCCGCTGATTACCTCAC GTAGAGCTATAGTCACATACCAAGTCAGGAATGCATCACATGAAGCTGTT TCTTCCTGACCTGATCTTGTTGACTTGCCTCTTCTCTCTCTTTCCTTGCC TTTACTGCATCTCCCTAACCATCATCTCCTACATCCCCTGACAGGCTGAG CTTGGGCTGAAGCCTCTCAACTTAGGGCCTAGCAAGGATGATAAAGCTGT GGAAAACATGCGGCTGAAGAAGGAAGCAGAGGACGCCCAGCTAGCAGCAC GGGAGGTTGAGAAGAGGCTGGATAAAGCCAGAAGGAAGAGGCTGCTGAAC GAGAAGCTTCAGGGAGAGACTCTGGGGCAGGTATGAGAACTGTGATGGCT ATGGTAACTGTGATAGTTATTGATAACTATGATAGGAGATGTGCTGCACT TTTCCCCTTTAAACCTTGATGTGAGTGAGGCTCTTGCAGTGATTCTGCCG TCACTGCCAAATGTTCCTCTTTCACCAACTCCTTTCAATGCCTTCCTTTA CTTGCTGGCATTGCATGACAGCCAGCAGAAGGTGGTGGTTCCGCAGCTGA CTGGGTCAAGAAAAGTCGAGCAGCAGCAGCCAAGCAAAAGGAAGAGAAGC TGTTGGCGGAGAAGCGGGCATTGCTCCTTGCAGAGCAGGACGATGCTGGT ACTGCATATGGTGCTGACGATTTGACTGGTTTAAAGGTG
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Coding sequence (CDS) from alignment at C-australica_Contig_1022:15597..16685+

>mRNA_C-australica_Contig_1022.13.1 ID=mRNA_C-australica_Contig_1022.13.1|Name=mRNA_C-australica_Contig_1022.13.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=654bp|location=Sequence derived from alignment at C-australica_Contig_1022:15597..16685+ (Chrysoparadoxa australica CS_1217)
AGGTCTAGGTCTAATGACCGCAGTAGGCGTGGCAAAAGGTCCCGTTCCCG
GTCCAGGGGAAGAGAGAGATCTAGGTCCAGGTCCAGGTCCAGGTCAAGGG
GCAGGGACCGTGGTAGAGACAGGGGCCGGAGCCGTGATAGGAGCTATGAC
AGGGGCCATGAGAGGTCCCGGTCTCCAGTGAAACGCAAGGCCAAAGTAAT
GGATGGTGAAGTGGACTATGAAGCTCTTAAGGCCTCTGCTGGAGTCTCGG
AGAAGGGGGGAGAGATCAGCATGTCTGTAGAGGAAACGAACAAGATAAGG
GCTGAGCTTGGGCTGAAGCCTCTCAACTTAGGGCCTAGCAAGGATGATAA
AGCTGTGGAAAACATGCGGCTGAAGAAGGAAGCAGAGGACGCCCAGCTAG
CAGCACGGGAGGTTGAGAAGAGGCTGGATAAAGCCAGAAGGAAGAGGCTG
CTGAACGAGAAGCTTCAGGGAGAGACTCTGGGGCAGCCAGCAGAAGGTGG
TGGTTCCGCAGCTGACTGGGTCAAGAAAAGTCGAGCAGCAGCAGCCAAGC
AAAAGGAAGAGAAGCTGTTGGCGGAGAAGCGGGCATTGCTCCTTGCAGAG
CAGGACGATGCTGGTACTGCATATGGTGCTGACGATTTGACTGGTTTAAA
GGTG
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