prot_C-australica_Contig_10202.1.1 (polypeptide) Chrysoparadoxa australica CS_1217

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-australica_Contig_10202.1.1
Unique Name	prot_C-australica_Contig_10202.1.1
Type	polypeptide
Organism	Chrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Sequence length	166

Homology

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BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A0B3S4P9_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=472 Tax=cellular organisms TaxID=131567 RepID=A0A0B3S4P9_9RHOB)

HSP 1 Score: 336 bits (862), Expect = 1.700e-115
Identity = 156/166 (93.98%), Postives = 162/166 (97.59%), Query Frame = 0

Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 166
            VQFTLPKNS+IKTGKTWPKP+ AKN+RKF IYRWNPDDGKNPQVDTYF+DMD CGPMVLDALIKIKNE+DPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDE+ GDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL
Sbjct:    2 VQFTLPKNSQIKTGKTWPKPEGAKNVRKFQIYRWNPDDGKNPQVDTYFLDMDACGPMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEISGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 167

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BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A520P6G8_9RHOB (Succinate dehydrogenase iron-sulfur subunit (Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A520P6G8_9RHOB)

HSP 1 Score: 328 bits (840), Expect = 2.800e-113
Identity = 152/166 (91.57%), Postives = 161/166 (96.99%), Query Frame = 0

Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 166
            VQ TLPKNS+I+ GKTWPKP  A NLRKFSIYRW+PDDG+NP+VDTYF+DMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYG+DE++GDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL
Sbjct:    2 VQLTLPKNSRIRRGKTWPKPDGATNLRKFSIYRWSPDDGENPRVDTYFVDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGMDEIKGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 167

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BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A221JWY2_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=17 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A221JWY2_9RHOB)

HSP 1 Score: 327 bits (839), Expect = 5.410e-112
Identity = 150/166 (90.36%), Postives = 161/166 (96.99%), Query Frame = 0

Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 166
            VQ TLPKNS+IKTGKTWPKP+ A NLRKF IYRWNPDDGKNPQVDTY+ID+D CGPM+LDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYG+DEV+GDVKIYPLPHMPVVKDLIPDLTHFYAQHAS+MPWLETKTNRPAKEW+QS+EDR+KLDGL
Sbjct:    2 VQLTLPKNSRIKTGKTWPKPEGATNLRKFQIYRWNPDDGKNPQVDTYWIDLDACGPMILDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGMDEVKGDVKIYPLPHMPVVKDLIPDLTHFYAQHASVMPWLETKTNRPAKEWRQSVEDREKLDGL 167

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BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A0W7WQ30_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A0W7WQ30_9RHOB)

HSP 1 Score: 323 bits (828), Expect = 2.650e-110
Identity = 152/167 (91.02%), Postives = 160/167 (95.81%), Query Frame = 0

Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEG-DVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 166
            VQFTLPKNSKI+TGKTWPKP+ AK  RKF IYRWNPDDG+NP+VDTYF+DM+TCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDE+   +VKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL
Sbjct:    2 VQFTLPKNSKIRTGKTWPKPEGAKKTRKFQIYRWNPDDGENPRVDTYFVDMETCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEISSAEVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 168

[Close]

BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A2R8BN11_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A2R8BN11_9RHOB)

HSP 1 Score: 323 bits (827), Expect = 3.630e-110
Identity = 149/166 (89.76%), Postives = 159/166 (95.78%), Query Frame = 0

Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 166
            VQFTLPKNSK++ GKTWPKP+ A N+RKF IYRW+PD G+NP+VDTYF+DMD CGPM+LDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEV+GDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRP KEWKQSIEDRKKLDGL
Sbjct:    2 VQFTLPKNSKMRVGKTWPKPEGATNVRKFQIYRWDPDTGENPRVDTYFVDMDNCGPMILDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVKGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPRKEWKQSIEDRKKLDGL 167

[Close]

BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A5C5GC27_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A5C5GC27_9RHOB)

HSP 1 Score: 322 bits (826), Expect = 5.160e-110
Identity = 149/166 (89.76%), Postives = 157/166 (94.58%), Query Frame = 0

Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 166
            VQ TLPKNS+I  GKTWPKP  A NLRK  +YRWNPDDGKNP++DTY+IDMD CGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDE++GD+KIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL
Sbjct:    2 VQLTLPKNSRITVGKTWPKPSGATNLRKVDVYRWNPDDGKNPRLDTYWIDMDNCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEIDGDIKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 167

[Close]

BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A0D1DCB9_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A0D1DCB9_9RHOB)

HSP 1 Score: 321 bits (823), Expect = 1.480e-109
Identity = 148/166 (89.16%), Postives = 157/166 (94.58%), Query Frame = 0

Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 166
            VQFTLPKNSKI TGKTWPKP+ A  L+ F IYRWNP+DGKNP+VDTYF+D+DTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDG NTLAC YG+DEV+GDVKIYPLPHMPVVKDLIPDLTHFYAQHAS+MPWLETKTN PAKEWKQSIEDRKKLDGL
Sbjct:    2 VQFTLPKNSKITTGKTWPKPEGANRLKTFKIYRWNPEDGKNPRVDTYFVDLDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGANTLACTYGIDEVDGDVKIYPLPHMPVVKDLIPDLTHFYAQHASVMPWLETKTNTPAKEWKQSIEDRKKLDGL 167

[Close]

BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A2T4J4H5_FUSBL (Succinate dehydrogenase iron-sulfur subunit n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A2T4J4H5_FUSBL)

HSP 1 Score: 321 bits (823), Expect = 1.480e-109
Identity = 149/166 (89.76%), Postives = 158/166 (95.18%), Query Frame = 0

Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 166
            VQ TLPKNSKI+TGKTWPKP  AKNLR F IYRW+PDDG+NP++DTYF+DMD+CGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDE++GDVKIYPLPHM VVKDLIPDLTHFYAQHASIMPWLETKTNRP KEWKQSI DRKKLDGL
Sbjct:    2 VQLTLPKNSKIRTGKTWPKPAGAKNLRTFRIYRWSPDDGENPRIDTYFVDMDSCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEIKGDVKIYPLPHMEVVKDLIPDLTHFYAQHASIMPWLETKTNRPGKEWKQSIADRKKLDGL 167

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BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: K2HDN7_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=1 Tax=Oceaniovalibus guishaninsula JLT2003 TaxID=1231392 RepID=K2HDN7_9RHOB)

HSP 1 Score: 320 bits (819), Expect = 6.000e-109
Identity = 147/166 (88.55%), Postives = 158/166 (95.18%), Query Frame = 0

Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 166
            VQ TLPKNSKI+TGKTWPKP+ A NLRK  IYRWNPDDG+NP+VDTYFIDMD+CGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEV+GD++IYPLPHMPVVKDLIPDLTHFYAQHAS+MPWLET TN P KEW+QSI+DRKKLDGL
Sbjct:    2 VQLTLPKNSKIRTGKTWPKPEGATNLRKLDIYRWNPDDGENPRVDTYFIDMDSCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVKGDIRIYPLPHMPVVKDLIPDLTHFYAQHASVMPWLETTTNEPRKEWRQSIDDRKKLDGL 167

[Close]

BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A1X6YS36_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=1 Tax=Roseovarius albus TaxID=1247867 RepID=A0A1X6YS36_9RHOB)

HSP 1 Score: 320 bits (819), Expect = 6.210e-109
Identity = 149/167 (89.22%), Postives = 160/167 (95.81%), Query Frame = 0

Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGD-VKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 166
            VQF LPKNS++ +GKTWPKP+ A N+RKF IYRWNPDDG+NP+VDTYF+DMDTCGPM+LDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYG+DEV GD VKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDR+KLDGL
Sbjct:    2 VQFKLPKNSRMVSGKTWPKPEGASNVRKFQIYRWNPDDGQNPRVDTYFVDMDTCGPMILDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGMDEVRGDTVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDREKLDGL 168

The following BLAST results are available for this feature:

BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot

BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B3S4P9_9RHOB	1.700e-115	93.98	Succinate dehydrogenase iron-sulfur subunit n=472 ...	[more]
A0A520P6G8_9RHOB	2.800e-113	91.57	Succinate dehydrogenase iron-sulfur subunit (Fragm...	[more]
A0A221JWY2_9RHOB	5.410e-112	90.36	Succinate dehydrogenase iron-sulfur subunit n=17 T...	[more]
A0A0W7WQ30_9RHOB	2.650e-110	91.02	Succinate dehydrogenase iron-sulfur subunit n=3 Ta...	[more]
A0A2R8BN11_9RHOB	3.630e-110	89.76	Succinate dehydrogenase iron-sulfur subunit n=2 Ta...	[more]
A0A5C5GC27_9RHOB	5.160e-110	89.76	Succinate dehydrogenase iron-sulfur subunit n=2 Ta...	[more]
A0A0D1DCB9_9RHOB	1.480e-109	89.16	Succinate dehydrogenase iron-sulfur subunit n=3 Ta...	[more]
A0A2T4J4H5_FUSBL	1.480e-109	89.76	Succinate dehydrogenase iron-sulfur subunit n=2 Ta...	[more]
K2HDN7_9RHOB	6.000e-109	88.55	Succinate dehydrogenase iron-sulfur subunit n=1 Ta...	[more]
A0A1X6YS36_9RHOB	6.210e-109	89.22	Succinate dehydrogenase iron-sulfur subunit n=1 Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 19..127 e-value: 8.4E-40 score: 137.1
IPR004489	Succinate dehydrogenase/fumarate reductase iron-sulphur protein	TIGRFAM	TIGR00384	TIGR00384	coord: 31..165 e-value: 6.9E-43 score: 144.6
IPR025192	Succinate dehydogenase/fumarate reductase N-terminal	PFAM	PF13085	Fer2_3	coord: 28..132 e-value: 3.3E-32 score: 110.7
None	No IPR available	PANTHER	PTHR11921	SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN	coord: 20..166
None	No IPR available	PANTHER	PTHR11921:SF29	SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT, MITOCHONDRIAL	coord: 20..166
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 79..87
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 27..118 score: 9.3386
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 58..92 e-value: 7.82168E-4 score: 34.678
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 27..127

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-australica_Contig_10202	contig	C-australica_Contig_10202:2..499 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Chrysoparadoxa australica CS_1217 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-australica_Contig_10202.1.1	mRNA_C-australica_Contig_10202.1.1	Chrysoparadoxa australica CS_1217	mRNA	C-australica_Contig_10202 2..499 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-australica_Contig_10202.1.1 ID=prot_C-australica_Contig_10202.1.1|Name=mRNA_C-australica_Contig_10202.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=166bp
VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFID
MDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACI
YGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPA
KEWKQSIEDRKKLDGL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012675	Beta-grasp_dom_sf
IPR004489	Succ_DH/fum_Rdtase_Fe-S
IPR025192	Succ_DH/fum_Rdtase_N
IPR006058	2Fe2S_fd_BS
IPR001041	2Fe-2S_ferredoxin-type
IPR036010	2Fe-2S_ferredoxin-like_sf