mRNA_C-australica_Contig_102.7.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_102.7.1
Unique NamemRNA_C-australica_Contig_102.7.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_102.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_102contigC-australica_Contig_102:16974..20108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2148
Hectar predicted targeting categoryother localisation
Exons11
Cds size1908
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_102.7.1prot_C-australica_Contig_102.7.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_102 17173..19992 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586754.2837143-UTR-C-australica_Contig_102:16973..170841682586754.2837143-UTR-C-australica_Contig_102:16973..17084Chrysoparadoxa australica CS_1217UTRC-australica_Contig_102 16974..17084 +
1682586754.2932465-UTR-C-australica_Contig_102:17159..171721682586754.2932465-UTR-C-australica_Contig_102:17159..17172Chrysoparadoxa australica CS_1217UTRC-australica_Contig_102 17160..17172 +
1682586754.4286284-UTR-C-australica_Contig_102:19992..201081682586754.4286284-UTR-C-australica_Contig_102:19992..20108Chrysoparadoxa australica CS_1217UTRC-australica_Contig_102 19993..20108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586754.3036127-CDS-C-australica_Contig_102:17172..172511682586754.3036127-CDS-C-australica_Contig_102:17172..17251Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 17173..17251 +
1682586754.31321-CDS-C-australica_Contig_102:17327..174311682586754.31321-CDS-C-australica_Contig_102:17327..17431Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 17328..17431 +
1682586754.3303397-CDS-C-australica_Contig_102:17512..176031682586754.3303397-CDS-C-australica_Contig_102:17512..17603Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 17513..17603 +
1682586754.3433313-CDS-C-australica_Contig_102:17755..177991682586754.3433313-CDS-C-australica_Contig_102:17755..17799Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 17756..17799 +
1682586754.3510697-CDS-C-australica_Contig_102:17864..179501682586754.3510697-CDS-C-australica_Contig_102:17864..17950Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 17865..17950 +
1682586754.365807-CDS-C-australica_Contig_102:18090..183191682586754.365807-CDS-C-australica_Contig_102:18090..18319Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 18091..18319 +
1682586754.3783457-CDS-C-australica_Contig_102:18392..186171682586754.3783457-CDS-C-australica_Contig_102:18392..18617Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 18393..18617 +
1682586754.3910482-CDS-C-australica_Contig_102:18773..188691682586754.3910482-CDS-C-australica_Contig_102:18773..18869Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 18774..18869 +
1682586754.4054809-CDS-C-australica_Contig_102:18979..190481682586754.4054809-CDS-C-australica_Contig_102:18979..19048Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 18980..19048 +
1682586754.4189177-CDS-C-australica_Contig_102:19107..199921682586754.4189177-CDS-C-australica_Contig_102:19107..19992Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 19108..19992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_102.7.1

>prot_C-australica_Contig_102.7.1 ID=prot_C-australica_Contig_102.7.1|Name=mRNA_C-australica_Contig_102.7.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=636bp
MESDSHTVWRAPSLGGSSDLDSTSNYGDQGLAHSFEVGGISELIEDITPF
SQQVRQEHLRQVVKAAHAKASPDACADLAAFKSAHRRAFQRAAGTSPANV
TITNQEVQPGGLLERLFFGDTSKGNDGPNGPNGNSSLSAGRHSRPMALEG
DEVGAVSFLDLINAYLRHTVSPIEGSAVVAAGLKDTARSAASPRKSLSST
NASGEGLARTEVMGDWEGFDEPQHQSRRASDGMLPPSLHQQQLRLHSLEH
NRDHPSLHHHHHHHHNNQQQQVERRGSAPPTLRSQEVLDELEARRQAVED
ALVEHALAEVAGHGVQHTVTAAELEKRRLSVADTYRAAISEGLLTPPPPP
PLHHDDCNDWHKTGSSSTAVDGCPASSTDSGRSDGRSEGRSEGRRRGGRS
SASPASTSRSSQRQRRGTVTSSLRGHSPTPSPTRPVTSRATSQRLRGCAG
GDRSDNCNSSGWCSCNGAAAARRMSTGVNVGRMHASNNGGPNGGHSECSM
AVACNADRDGATAGGAGGRRRSCHVCGREKGAVTAAVPASNNRSRRHSST
SGSGRRESNAYGRGGSSRQLGYTFPAPQGQRRRSSCHTCGCCNGEALLGL
PRWDNSTKVERNFEPFSRRKVPKDTGRRWSQDTPF*
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mRNA from alignment at C-australica_Contig_102:16974..20108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_102.7.1 ID=mRNA_C-australica_Contig_102.7.1|Name=mRNA_C-australica_Contig_102.7.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3135bp|location=Sequence derived from alignment at C-australica_Contig_102:16974..20108+ (Chrysoparadoxa australica CS_1217)
AGGAGAGGTGCTGCCGGCTAAGGTGAAGCATGCCGTGTTGTATACCTGCA
ATGACCCTCCTTGGTGAAACTGTTTAACCTGCACCCCCACCCGTCCTAAT
TTTGCCCGAAGGTGAGTGTGGCCCACCTCCTCCCTGTTGCGCGGCTTCCT
TCTCCTCTCAGTCTTGCATTCTTCTCGCGACTGCAGTGCTCTTCTTCGGA
TGGAGAGTGATTCCCACACTGTATGGAGAGCACCCTCGCTCGGCGGCTCC
AGTGACCTTGACAGCACATCCAACTATGGTCTGCCCAACCCCACCGCCCA
GTACCCTAAAGCATGCTGGTCCTGAAGCCACCCACCTCCGTGGCCTCCCT
CCAGGAGACCAGGGCTTGGCTCATAGCTTTGAAGTGGGAGGGATAAGTGA
GCTAATTGAGGATATAACGCCATTCTCTCAACAAGTGCGGCAAGAGCACC
TTCGGCAGGTTAGGATTGGCCAGTCTCCCCCTGCCTGGCTGGCCCTCTCC
CTTCCCATTCAATAGTATGTTAACTGAAGGCAATCGCAGGTTGTTAAGGC
TGCCCATGCCAAGGCCAGCCCTGATGCCTGTGCTGACTTGGCTGCATTCA
AGAGTGCCCACCGGAGGGCCTTTCAAAGAGGTTCACTTAACTCTTATGAA
GTTAGCTTGACCCCATGAGGCTTCTCCAGTCCCCTCCGCTTGGGGTCCTC
AGTCCTCATGTCATGTCTAACTTGATGCTCTACTATTGATGCTCTACTAA
ACCTCACTGCCCTTCCTTACTGCATCCTCCAGCTGCGGGTACATCCCCGG
CAAATGTCACCATTACCAATCAAGAGGTGATATTTTGATACTTTGTTTGG
GGAGACTCGAGAGGAGGCTCATTCTCATCTCAACCACGCAGGTGCAACCA
GGGGGCCTGCTGGAGAGACTATTCTTTGGTGATACTTCCAAGGGCAATGA
CGGGCCTAATGGGCCTAATGGCAACAGGTGTGTGTGTGGATTTCATCACA
TTTCATGAAAAGCTGACCTCTTTCAGCATGACAAGCTTAGCTTCACTCAT
ATGACCAGTCTCCACAATTGATGTGTTACTATGCTCTCTTAATTCATCTT
CATTCCCATCTCCACAGTTCCCTGAGTGCAGGTCGTCATAGCAGGCCCAT
GGCCTTAGAGGGTGATGAAGTTGGGGCAGTGTCATTTCTTGACCTCATCA
ATGCCTATTTGAGACATACAGTATCACCAATAGAGGGGTCTGCGGTTGTG
GCTGCTGGTTTAAAGGATACCGCTCGCTCTGCAGCAAGCCCAAGGAAGAG
TTTATCGAGCACAAATGCCAGCGGTGAGGGGCTGGCTAGAACAGAGGTGA
GCTCTGCTAACATAGAGGATACTCTTCTCTACTCACACTAACGATATATG
ATGTGTAAACCTAACGCAGGTCATGGGGGACTGGGAAGGCTTTGATGAGC
CCCAGCACCAGTCCCGCCGTGCTTCCGATGGGATGCTCCCTCCATCCCTA
CATCAGCAGCAGCTGCGCCTCCACTCTTTAGAGCACAACCGGGACCATCC
CAGCTTGCATCATCATCACCATCATCATCATAATAATCAGCAGCAGCAGG
TGGAGAGGAGGGGCTCCGCACCGCCAACCTTGCGCTCCCAAGAGGTCTGT
CAAGGGGACTGGCTCAGTTGTCATTTGTCAGTTCTGTCTGTTGTCAGTTA
GATTGCTCTAGGTTGAGGTAGATTGAGCCGAATGAAACTGACTGGTTAGT
GTGAAGAAGGAGGATTGTGACCAGTGCTTGTGCCGGTCTAACCAACTTAG
GTACTCGATGAGCTTGAGGCCCGGAGGCAAGCAGTTGAAGATGCATTGGT
GGAGCATGCTCTCGCAGAAGTTGCTGGGCACGGAGTCCAGCACACGGTAT
GGCCAGACCATGATGCCTGGCCTGCCAATCCTCCTATCTTTTTTCCCAAG
CCGATGGACTTCACCAGGAAATAGCAGGAGCTGACGCTGAACCTTTTTCT
TTTAAGGTCACTGCAGCCGAGTTGGAGAAACGCCGCTTATCTGTTGCTGA
CACCTATAGGGCAGCTATCTCAGAGGTATCTCACTCATCCATTCACTTCT
CCTAATCTGCCCATCTCATATCATCTCATCTCAGGGGTTGCTCACACCGC
CACCTCCACCACCGCTTCACCACGATGACTGCAATGACTGGCATAAGACT
GGCAGCAGCAGCACCGCCGTGGATGGCTGCCCTGCTAGTAGCACTGACAG
CGGCAGAAGTGATGGGAGAAGTGAAGGCAGAAGTGAGGGCAGAAGGAGAG
GTGGCCGCAGCAGTGCATCACCAGCAAGCACGAGCAGAAGCAGCCAACGC
CAGCGCAGGGGGACCGTTACCTCAAGCCTAAGGGGTCACTCCCCTACACC
CTCCCCAACACGACCTGTTACTAGTAGAGCTACTAGTCAGCGGCTAAGGG
GCTGCGCGGGTGGTGACCGCAGCGATAATTGTAACTCTAGCGGGTGGTGC
AGCTGCAATGGTGCAGCAGCAGCACGGCGAATGAGCACAGGGGTCAACGT
AGGGCGTATGCATGCTTCGAACAATGGAGGGCCCAATGGAGGGCACAGCG
AGTGCAGCATGGCAGTTGCTTGCAATGCTGATAGAGATGGTGCTACTGCT
GGTGGTGCTGGAGGAAGGAGGCGGTCGTGCCATGTATGTGGCAGGGAGAA
GGGTGCTGTCACCGCTGCTGTACCTGCATCAAATAACAGGAGCCGCAGGC
ATAGCAGCACAAGTGGGAGTGGCAGAAGAGAGTCTAACGCATATGGTCGG
GGTGGCTCTTCACGGCAGCTTGGCTACACCTTCCCAGCCCCCCAAGGCCA
ACGTAGGAGGAGCTCATGCCACACGTGTGGCTGCTGCAATGGTGAAGCAC
TACTGGGGCTGCCACGTTGGGATAATAGCACCAAGGTGGAGAGGAACTTT
GAGCCATTCAGTCGGAGAAAGGTGCCAAAGGACACCGGGAGGCGGTGGTC
ACAGGATACACCTTTTTAATCGGTGAGGCATTGGTTTGGTGCTGTGTTGG
CGCTAGCTTGAGTGCTTGTGTATGCCAGGCTGTGACAGAGGGCCTGCCGC
TGCATTTTGGGTCTCACAATTGGAGCTTAAAGCGA
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Coding sequence (CDS) from alignment at C-australica_Contig_102:16974..20108+

>mRNA_C-australica_Contig_102.7.1 ID=mRNA_C-australica_Contig_102.7.1|Name=mRNA_C-australica_Contig_102.7.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1908bp|location=Sequence derived from alignment at C-australica_Contig_102:16974..20108+ (Chrysoparadoxa australica CS_1217)
ATGGAGAGTGATTCCCACACTGTATGGAGAGCACCCTCGCTCGGCGGCTC
CAGTGACCTTGACAGCACATCCAACTATGGAGACCAGGGCTTGGCTCATA
GCTTTGAAGTGGGAGGGATAAGTGAGCTAATTGAGGATATAACGCCATTC
TCTCAACAAGTGCGGCAAGAGCACCTTCGGCAGGTTGTTAAGGCTGCCCA
TGCCAAGGCCAGCCCTGATGCCTGTGCTGACTTGGCTGCATTCAAGAGTG
CCCACCGGAGGGCCTTTCAAAGAGCTGCGGGTACATCCCCGGCAAATGTC
ACCATTACCAATCAAGAGGTGCAACCAGGGGGCCTGCTGGAGAGACTATT
CTTTGGTGATACTTCCAAGGGCAATGACGGGCCTAATGGGCCTAATGGCA
ACAGTTCCCTGAGTGCAGGTCGTCATAGCAGGCCCATGGCCTTAGAGGGT
GATGAAGTTGGGGCAGTGTCATTTCTTGACCTCATCAATGCCTATTTGAG
ACATACAGTATCACCAATAGAGGGGTCTGCGGTTGTGGCTGCTGGTTTAA
AGGATACCGCTCGCTCTGCAGCAAGCCCAAGGAAGAGTTTATCGAGCACA
AATGCCAGCGGTGAGGGGCTGGCTAGAACAGAGGTCATGGGGGACTGGGA
AGGCTTTGATGAGCCCCAGCACCAGTCCCGCCGTGCTTCCGATGGGATGC
TCCCTCCATCCCTACATCAGCAGCAGCTGCGCCTCCACTCTTTAGAGCAC
AACCGGGACCATCCCAGCTTGCATCATCATCACCATCATCATCATAATAA
TCAGCAGCAGCAGGTGGAGAGGAGGGGCTCCGCACCGCCAACCTTGCGCT
CCCAAGAGGTACTCGATGAGCTTGAGGCCCGGAGGCAAGCAGTTGAAGAT
GCATTGGTGGAGCATGCTCTCGCAGAAGTTGCTGGGCACGGAGTCCAGCA
CACGGTCACTGCAGCCGAGTTGGAGAAACGCCGCTTATCTGTTGCTGACA
CCTATAGGGCAGCTATCTCAGAGGGGTTGCTCACACCGCCACCTCCACCA
CCGCTTCACCACGATGACTGCAATGACTGGCATAAGACTGGCAGCAGCAG
CACCGCCGTGGATGGCTGCCCTGCTAGTAGCACTGACAGCGGCAGAAGTG
ATGGGAGAAGTGAAGGCAGAAGTGAGGGCAGAAGGAGAGGTGGCCGCAGC
AGTGCATCACCAGCAAGCACGAGCAGAAGCAGCCAACGCCAGCGCAGGGG
GACCGTTACCTCAAGCCTAAGGGGTCACTCCCCTACACCCTCCCCAACAC
GACCTGTTACTAGTAGAGCTACTAGTCAGCGGCTAAGGGGCTGCGCGGGT
GGTGACCGCAGCGATAATTGTAACTCTAGCGGGTGGTGCAGCTGCAATGG
TGCAGCAGCAGCACGGCGAATGAGCACAGGGGTCAACGTAGGGCGTATGC
ATGCTTCGAACAATGGAGGGCCCAATGGAGGGCACAGCGAGTGCAGCATG
GCAGTTGCTTGCAATGCTGATAGAGATGGTGCTACTGCTGGTGGTGCTGG
AGGAAGGAGGCGGTCGTGCCATGTATGTGGCAGGGAGAAGGGTGCTGTCA
CCGCTGCTGTACCTGCATCAAATAACAGGAGCCGCAGGCATAGCAGCACA
AGTGGGAGTGGCAGAAGAGAGTCTAACGCATATGGTCGGGGTGGCTCTTC
ACGGCAGCTTGGCTACACCTTCCCAGCCCCCCAAGGCCAACGTAGGAGGA
GCTCATGCCACACGTGTGGCTGCTGCAATGGTGAAGCACTACTGGGGCTG
CCACGTTGGGATAATAGCACCAAGGTGGAGAGGAACTTTGAGCCATTCAG
TCGGAGAAAGGTGCCAAAGGACACCGGGAGGCGGTGGTCACAGGATACAC
CTTTTTAA
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