mRNA_C-australica_Contig_1019.4.5 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1019.4.5
Unique NamemRNA_C-australica_Contig_1019.4.5
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1019.4.5 vs. uniprot
Match: D7FUI9_ECTSI (Alpha-ketoglutarate-dependent dioxygenase FTO n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUI9_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 7.660e-83
Identity = 183/452 (40.49%), Postives = 237/452 (52.43%), Query Frame = 1
Query:   52 REYLLPTDEAFNHTRKSHYAGFEHQPANTISNTTHRSFASLFRELDAAGLFLYDIVQAGGKTVSKTYVTRTLVGEPGITYKYLGTRIFAHPW---EGRCLQGPRGKELAG-----------SDDGGLWRGGVARAQERLRKAG------VPSTLAAAGKLNKWMVARAATAATAAPESCAATRGSCNFNLALINCMD-SGLK-GLKPEPLHNMGTCSVSWHADSCLEDYSTIGVYHCTKP-EAGKEWRIAMRCSDK-----DG-------------------------PEGE------AASGA-------------PPMVMPLASGDLYMLLGNFNHNREHAVLTGKTSLRYSSTHRVSVVEGNTYQEMAKSASEVL----------DSNPTTPAALQQQQAIMTELETEWICQFYEKGQIHAEVHTWWHGPIMHLCQLWSQLNDWTEKCIE 1161
            R +L P D  F       Y G  H+PA ++    H  F   F  L  AGLFLYD VQAGGK +S+T+VTRTLVG+ GITYKYLG R+FAHPW   E    +GP G  LA            S DG      V ++++ LR +       V  TL   G L++WM  RA              RGSC FNL LIN M+ SG K  LKP+PL +MG CSVSWHADSCL+D+STIGVYHCT P  A  +W IA+R S +     DG                         P G       AAS A             PP+++PL SGD Y LL +FNH  EHAV++G ++LRYSSTHRV+  +GNT+  + K   + L          D      A ++ +QA++TELE+EW+ QF+ +G+ HA +H WW GP+  +   W +L   T   ++
Sbjct:  110 RSWLSPGDPLFTPALDRSYRGVRHEPAGSLPQAVHSGFRQSFDSLHEAGLFLYDTVQAGGKRLSRTFVTRTLVGDAGITYKYLGLRLFAHPWGLGESDFRKGP-GDGLADALNDPCLADLFSKDGAS---SVRKSKDNLRGSRFDDNDRVADTLRKVGDLSEWMRLRAGAMLKEEVREAGGERGSCAFNLTLINRMECSGAKRDLKPDPLFSMGKCSVSWHADSCLQDFSTIGVYHCTDPVPAEPDWGIALRVSTEARVGGDGXXXXXXXXXSNDEKTRRKEAERGLKPAGPKAVASVAASAAEAVPEKQGEQVLTPPLLIPLQSGDAYFLLDDFNHFHEHAVVSGSSTLRYSSTHRVADTDGNTFSHVQKRCEQALAGGGSAAAGGDDQILNLAQVRAEQALLTELESEWLNQFWVQGRRHASLHPWWRGPMALVLATWRELERRTSLTVQ 557          
BLAST of mRNA_C-australica_Contig_1019.4.5 vs. uniprot
Match: A0A835ZL97_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL97_9STRA)

HSP 1 Score: 268 bits (685), Expect = 1.060e-74
Identity = 198/525 (37.71%), Postives = 256/525 (48.76%), Query Frame = 1
Query:  154 HRSFASLFRELDAAGLFLYDIVQAGGKTVSKTYVTRTLVGEPGITYKYLGTRIFAHPWEG-----------------------------RCLQGPRGKELAGSDDGGLWRGGVARAQERLRKAG--VPSTLAAAGKLNKWMVARAATAA-----TAAPESCAATRGSCNFNLALINCMDSGLKG------LKPEPLHNMGTCSVSWHADSCLEDYSTIGVYHCTKPEAGK------------------EWRIAMRCSDKDGPEGEAASGAPPMVMPLASGDLYMLLGNFNHNREHAVLTGKTSLRYSSTHRVSVVEGNTYQEMAKSASEVLD-SNPTTPAA----LQQQQAIMTELETEWICQFYEKGQIHAEVHTWWHGPIMHLCQLWSQLNDWTEKCIERHCSAGPSTPGIS-SKTFKVLMRCLEERQQQRVKRQERVASSAFARMPEGLRPVDPPLCMSGPQAIKR-----------LAADIKRLRSSYGS-HCNGNNLTA-----RSVAAGAQSNWDALKR 1479
            H      F ++  AGLFLYDIVQAGGK +S T+VTRTLVGE GITYKYLG RIFAHPW G                                     ++ A ++   LW       Q  +   G  V + L     LN W+  RA  A      TA   +   + GS +FNL LIN M+    G      LKPEP+  MG  SVSWHADSCLEDYSTIGVYH T P                      +W+           EGE     PP+V+PL SGD Y +L +FNH  EH VL G+ +LRYSSTHRVSV EGNT+ +++    EVL  S PT PA     L+ +QA+ TELE EW+ QF+ +G+ HA +H WW  P+  L + W +L   +   +    S  P + G    +  + L RCLE R+QQR +  ER+A +A+  +P    P+ P L                     L   + +LR  Y + H      TA     R++ AGA SNW AL++
Sbjct:    2 HSLVREAFSKVHEAGLFLYDIVQAGGKRLSSTFVTRTLVGEAGITYKYLGLRIFAHPWCGGGQADVGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDAAVTE---LW------GQGEVESLGPKVVTALRQLCTLNAWLRRRAERACAEEGITARLAAAGHSPGSFDFNLTLINRMEPSGHGDGYHAKLKPEPIFGMGKASVSWHADSCLEDYSTIGVYHVTTPXXXXXXXXXXXXXXXXXXXXXADWKAVASAKA----EGEEVV-TPPLVVPLRSGDAYFMLDDFNHYHEHLVLAGEDTLRYSSTHRVSVREGNTWAQISGRCREVLSVSAPTAPALPLAQLRAEQALQTELEGEWLYQFWAQGRRHARLHPWWRRPMNALVRWWRELERRSHAAVTHLLS--PQSEGAELPRAVETLARCLEARRQQRARWAERLADAAYRALPPDAAPLRPGLWGGXXXXXXXXXXXSAALPYDLTGTVAKLRERYAAAHKAATGGTAVATSARALVAGATSNWAALQQ 510          
BLAST of mRNA_C-australica_Contig_1019.4.5 vs. uniprot
Match: A0A7S2RU45_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RU45_9STRA)

HSP 1 Score: 258 bits (660), Expect = 5.090e-74
Identity = 182/523 (34.80%), Postives = 263/523 (50.29%), Query Frame = 1
Query:   52 REYLLPTDEAFNHTRKSHYAGFEHQPANTISNTTHRSFASLFRELDAAGLFLYDIVQAGGKTVSKTYVTRTLVGEPGITYKYLGTRIFAHPWEGRCLQGPRGKELAGSDDGGLWRGGVARAQERLRKAGVPSTLAAAGKLNKWMVARA-ATAATAAPESCAATRGSCNFNLALINCMDSGL--KGLKPEPLHNMGTCSVSWHADSCLEDYSTIGVYHCTKP------EAGK-----------EWRIAMRCSDKDGPEGEAASGAPPMVMPLASGDLYMLLGNFNHNREHAVLTGKTSLRYSSTHRVSVVEGNTYQEMAKSASEVLD--------SNPTTP----------AALQQQQAIMTELETEWICQFYEKGQIHAEVHTWWHGPIMHLCQLWSQLNDWTEKCIERHCSAGPSTPGISS-KTFKVLMRC---LEERQQQRVKRQERVASSAFARMPEGLRPVDPPLCMSGPQ----AIKRLAADIKRLRSSYGSHCNGNNLTARSVAAGAQSNWDALKRK 1482
            + +L+P D  F+    + Y GF+ +   ++    H +F  +F+ LD AG+F YD+VQAGGK +SKT+V RTLVG+PGITYKYLG RIFAHPW   C +    K  A                E   +  +P  L A  +LN+ +++RA    AT          G   FNL LIN M+     K L+ EPL  MG CSVSWHADS L+D+STI VYH T+P        GK           +WRI +R +D D          PP+ +P  SGDLY LL +FNH+ +HAVL+G    RYSSTHRV+  EG+T++ + +  +++L+        S  T+P          A+ + +Q ++ E+E EW+ Q+Y +GQ HA++H WWH P+  L +            +           G+SS K+   + R    LE+R  +R   + +     +  +P   RP+  PL  +  +    A++ L A I RL+S       G   +         SNW AL+ K
Sbjct:   29 KAFLVPGDAEFHKVLSASYQGFQMETGPSLPPPLHAAFGGVFQSLDEAGVFQYDVVQAGGKILSKTFVRRTLVGDPGITYKYLGLRIFAHPW---CRETAPSKNPA----------------EPNIEPPIPKALQALYRLNEELISRAEGLLATEQQRRQLPAVGPTRFNLTLINQMEPTQVEKALRDEPLFGMGKCSVSWHADSGLQDFSTIAVYHSTEPPREGASRGGKSKWMKGNAHLDDWRIGLRVADDD--------VTPPVALPTRSGDLYFLLDDFNHHHQHAVLSGSCR-RYSSTHRVAREEGHTWKYIHRRCTKLLEGFASLRHSSTATSPGTRETRAVNLASARSEQVLLDEVEFEWVRQWYIQGQTHADLHVWWHEPMQQLLEXXXXXXXXXATAVXXXXXXXXX--GVSSAKSLAAVERFASGLEQRVAKRKMWERKERDKVWKSLPATCRPLPVPLAGTSSEDCCRALEGLRAAIGRLKSGAQKQTQGFQASG--------SNWAALQAK 513          
BLAST of mRNA_C-australica_Contig_1019.4.5 vs. uniprot
Match: A0A6G0WHV1_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHV1_9STRA)

HSP 1 Score: 237 bits (604), Expect = 3.820e-67
Identity = 165/446 (37.00%), Postives = 228/446 (51.12%), Query Frame = 1
Query:   55 EYLLPTDEAFNHTRKSHYAGFEHQPANTISNTTHRSFASLFRELDAAGLFLYDIVQAGGKTVSKTYVTRTLVGEPGITYKYLGTRIFAHPWEG-RCLQGPRGKELAGSDDGGLWRGGVARAQERLRKAGVPSTLAAAGKLNKWMVARAATAATAAPESCAATRGSCNFNLALINCM--DSGLKGLKPEPLHNMGTCSVSWHADSCLEDYSTIGVYHCT----KPEAGKEWRIAMRCSDKDGPEGEAASGAPPMVMPLASGDLYMLLGNFNHNREHAVLTGKTSLRYSSTHRVSVVEGNTYQEMAKSASEVLDS--NPTTPA------ALQQQQAIMTELETEWICQFYEKGQIHAEVHTWWHGPIMHLCQLWSQLNDWTEKCIERHCSAGPSTPGISS-KTFKVLMRCLEERQQQRVKRQERVASSAFARMPEGLRPVDPPLCMSG 1344
            ++L P+   FN   K  Y GF H+P  T+    H    S F +L     F YD+V AGGK +S+T+V RTLVG+ GITYKYLG RIFAH W+   C   P  K L                                 +LN+ M+ R          S   T   C++NL LIN M  D+ + GLK +P ++MG  SVSWHADS L+DYS+IGVYH      K +A  +WRIAMR S    PE   A+  PP+V+P   GD+Y L G+FNH  +H VL G T++R SSTHRV+V + +T Q +    +  L S  N  +P       A++++QA +T +E +WI Q++ +G  H E+HT W GP+  L   W  L + T+  ++    A   T  I   K  K ++  L  RQ  R +   R+    F R+    +P + P   SG
Sbjct:   79 KFLTPSHPQFNEILKRSYVGFVHEPGTTLPRDFHEGMRSAFEKLRDNEYFQYDVVMAGGKHLSRTFVRRTLVGDYGITYKYLGLRIFAHVWDKPHCA--PVFKSLY--------------------------------QLNQRMIERT-------KRSMKPTPPLCDYNLTLINYMEPDNPMLGLKADPTYDMGKVSVSWHADSSLQDYSSIGVYHSLLGNKKKKAPCDWRIAMRLS----PEVPGAATTPPLVLPTDGGDVYYLNGDFNHFHQHMVLAG-TAVRVSSTHRVAVTDEDTLQYIQGRVARALKSSANGNSPFRDGEVDAVREEQATLTVVEMDWIRQYWIQGVKHDELHTDWQGPMRKLEASWLVLEERTKTLVD----ALLKTQDIEHLKVLKAVLEGLRARQAGRDQFVHRMRDKVFKRIHADFQPTERPTWKSG 474          
BLAST of mRNA_C-australica_Contig_1019.4.5 vs. uniprot
Match: B8BV54_THAPS (Alpha-ketoglutarate-dependent dioxygenase FTO (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BV54_THAPS)

HSP 1 Score: 232 bits (592), Expect = 1.920e-64
Identity = 164/465 (35.27%), Postives = 223/465 (47.96%), Query Frame = 1
Query:   52 REYLLPTDE--AFNHTRKSHYAGFEHQPANTISNTTHRSFASLFRELDAAGLFLYDIVQAGGKTVSKTYVTRTLVGEPGITYKYLGTRIFAHPWEGRCLQGPRGKELAGSDDGGLWRGGVARAQERLRKAG----VPSTLAAAGKLNKWMVARAAT------AATAAPESCAATRGSCNFNLALINCMDSGL--KGLKPEPLHNMGTCSVSWHADSCLEDYSTIGVYHCTKPEA-GKEWRIAMRCSDKDGPEGEAASGAPPMVMPLASGDLYMLLGNFNHNREHAVLTGKTSLRYSSTHRVSVVEGNTYQEMAKSASEVLD-------SNPTTPAA----------LQQQQAIMTELETEWICQFYEKGQIHAEVHTWWHGPIMHLCQLWSQLNDWTEKCIERHCSAGPSTPG------ISSKTFKVLMRCLEERQQQRVKRQERVASSAFARMPEGLRPVDPPL 1332
            R +L P ++  AF+   K+ Y GF +   + + +T H  F S F  +DA  LFLYD VQ G K +++T VTRTLVG+PG TYKYLG R+F+HPW                 DG +      R    L K G      S L A G+ N ++  R+ T      A    P       GS  +NL L+N M S    + LK E  +NMG  SV WH DS L+D+S+I VY   K  A    W +A+R  D  G  G   +  P +++PL SG LY +  +FNHN EHAV+ G   +RYSSTHRV+     T+Q +     +VLD       S  T  A+          ++ QQ +M E+E EW+ Q+Y +G  HA +H +WH PI  LC  +S +   +   + R   A            +S   F V +  L ER  QR     R     F  +P   RP   PL
Sbjct:   77 RAFLTPQEDPKAFDSCLKTSYTGFRYDSPSALPSTLHGEFESSFDGMDAGDLFLYDTVQPGKKRLTRTSVTRTLVGDPGSTYKYLGLRLFSHPWTDV------------DKDGNMQSKEQKRVGSTLHKLGYSEKTTSALLAMGRANAYLTERSNTMLKKYVAPNVQPPGLV---GSAEYNLTLVNKMASTTMKRDLKNEMAYNMGKISVGWHRDSGLKDFSSIAVYQTLKDTATANSWGVAIRAMD--GGTGGPLASVPALLVPLPSGSLYYMFDDFNHNHEHAVIAGSDGVRYSSTHRVAREGAGTWQYIRDKTKQVLDASTKFNSSEKTCQASKKTFEKFVAHVRLQQLLMNEVEFEWLRQWYVQGSKHASLHPYWHQPIEVLCDSYSNMEQRSVDLLVRMKRASHDNKTETFNTELSEDLFDVFIETLTERSNQRSGWTARYRDPIFGEIPADERPFPCPL 524          
BLAST of mRNA_C-australica_Contig_1019.4.5 vs. uniprot
Match: A0A485KA16_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KA16_9STRA)

HSP 1 Score: 224 bits (571), Expect = 2.450e-62
Identity = 156/440 (35.45%), Postives = 215/440 (48.86%), Query Frame = 1
Query:   55 EYLLPTDEAFNHTRKSHYAGFEHQPANTISNTTHRSFASLFRELDAAGLFLYDIVQAGGKTVSKTYVTRTLVGEPGITYKYLGTRIFAHPWEGRCLQGPRGKELAGSDDGGLWRGGVARAQERLRKAGVPSTLAAAGKLNKWMVARAATAATAAPESCAATRGSCNFNLALINCM--DSGLKGLKPEPLHNMGTCSVSWHADSCLEDYSTIGVYHCTKPEAGKE------WRIAMRCSDKDGPEGEAASGAPPMVMPLASGDLYMLLGNFNHNREHAVLTGKTSLRYSSTHRVSVVEGNTYQEM-AKSASEVLDSNPTTPAALQQ------QQAIMTELETEWICQFYEKGQIHAEVHTWWHGPIMHLCQLWSQLNDWTEKCIERHCSAGPSTPGISSKTFKVLMRCLEERQQQRVKRQERVASSAFARMPEGLRPVDPP 1329
            +YL P    F+      + GF H+ A  +    H      F +L   G F YD+V AGGK +S+T+V RTLVG+ GITYKYLG RIFAH W  R    P  + L                                  LN+ M+AR   +   AP  C        +NL LIN M  D+ L GLK +P + MG  SVSWHADS L+DYS+IGVYH   P   K+      WRIA+R S    PE   A   PP+V+P   GD Y L G+FNH  +H VL+G T++R SSTHRV+V + +T Q + A+  + V+ S   TP  L +      +QA +T +E +WI Q++ +G  H E+H  W  P+  L   W  L   T+  ++       +      K  K ++  L  RQ  R +   R+    F R+    +P++ P
Sbjct:   83 KYLTPAHPMFDEILARSFVGFVHENAAKLPKDLHAGMRLAFEKLRDKGYFQYDVVMAGGKHLSRTFVRRTLVGDFGITYKYLGLRIFAHAWN-RPSSAPVFQSLY--------------------------------DLNQQMIARTKRSMVPAPPLC-------EYNLTLINYMEPDNPLLGLKDDPTYGMGKVSVSWHADSSLQDYSSIGVYHTLLPTKQKQPKTRCDWRIALRLS----PEVPGADQTPPLVLPTDDGDAYYLNGDFNHFHQHMVLSG-TAVRVSSTHRVAVTDEDTLQYIQARVKTAVVSSESKTPFRLDEAEHVRVEQATITTVEMDWIRQYWIQGAKHDELHVDWQAPMQKLEGQWRLLEGRTKTLVDALLETHDTA---HLKVLKAVLEGLRARQAGRDQFVHRMRDKVFKRIHADFQPMERP 474          
BLAST of mRNA_C-australica_Contig_1019.4.5 vs. uniprot
Match: A0A7S4S7H4_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S7H4_9STRA)

HSP 1 Score: 227 bits (579), Expect = 7.040e-62
Identity = 170/528 (32.20%), Postives = 253/528 (47.92%), Query Frame = 1
Query:   58 YLLPTDEA--FNHTRKSHYAGFEHQPANTISNTTHRSFASLFRELDAAGLFLYDIVQAGGKTVSKTYVTRTLVGEPGITYKYLGTRIFAHPWEGRCLQGPRGKELAGSDDGGLWRGGVARAQERLRKAGVPSTLAAAGKLNKWMVARAATAATAAPESCAATRG---SCNFNLALINCMD--SGLKGLKPEPLHNMGTCSVSWHADSCLEDYSTIGVYHCTKPEAGKE------------------------WRIAMRCSDKDGPEGEAASGAPPMVMPLASGDLYMLLGNFNHNREHAVLTGKTSLRYSSTHRV----------------SVVEGNTYQEMAKSA--------SEVLDSNPTTPAA-------LQQQQAIMTELETEWICQFYEKGQIHAEVHTWWHGPIMHLCQLWSQLNDWTEKCIE----RHCSAGPSTPGISSKTFKVLMRCLEERQQQRVKRQERVASSAFARMPEGLRPVDPPLC--------MSGPQAIKRLAADIKRLRSSYGSHCNGN 1419
            +L P D+   F    +  Y GF  +    +  + H SF S F +L+ +GLFLYDIVQ G K +S+TYVTRTLVG PG TY+YLG R+F+HPW   C     G  L G +        + +     + A   S+L   G +N  ++ R  +            RG   S ++ L LIN M+  S  + LK E L  +G  SVSWH DS L+D+S+I VYH    + G                          WR+A+R +D++  +       P + +PL  G LY LL +FNH REHAVL+G   LRYSSTHRV                SV+    Y  M+ S+        S+V +S+ +T          ++  Q ++TE+E EW+ Q+  +GQ HA +H +WH PI  L + + QL  ++   I+       +    TPG+S   F V++  +EER + RV   ER+    FA +P   +P + P+             + +  L  ++++ RSS+ +   GN
Sbjct:  132 FLTPNDDGDDFKSCHEECYKGFHWEEPKNLPQSLHTSFESSFHDLNDSGLFLYDIVQPGRKRLSRTYVTRTLVGCPGSTYRYLGLRLFSHPW---CDVAENGDALVGGNKNDKEGSSLIKLGYSQKCA---SSLLQIGNINTTLITRTNSVLKERISPMVKPRGLVGSADYTLTLINRMEPTSIKRDLKNENLFGLGKTSVSWHKDSGLQDFSSIAVYHTILQDEGNNRYDRDYEYDNKSLKNGKGSQNNTPWRVALRVADENNAK------TPALAVPLPGGSLYYLLDDFNHTREHAVLSGSNQLRYSSTHRVAREGCGTWQYIRDKCDSVLSSCRYIIMSASSTAVPEKRDSKVKESDLSTAKRKKMMVKEVRAHQQLITEIEFEWLRQWCIQGQRHARLHPFWHRPIERLQESYKQLERFSLIAIQILKDSSMTVEKKTPGVSEDIFDVMIEGIEERMRLRVAWHERLQDPIFASLPPETQPFNCPVLDRTTTDKKCEMTEDLHGLINNLRKWRSSFVNQKEGN 647          
BLAST of mRNA_C-australica_Contig_1019.4.5 vs. uniprot
Match: W4FR64_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR64_9STRA)

HSP 1 Score: 221 bits (562), Expect = 5.520e-61
Identity = 153/445 (34.38%), Postives = 219/445 (49.21%), Query Frame = 1
Query:   55 EYLLPTDEAFNHTRKSHYAGFEHQPANTISNTTHRSFASLFRELDAAGLFLYDIVQAGGKTVSKTYVTRTLVGEPGITYKYLGTRIFAHPWEGRCLQGPRGKELAGSDDGGLWRGGVARAQERLRKAGVPSTLAAAGKL---NKWMVARAATAATAAPESCAATRGSCNFNLALINCM--DSGLKGLKPEPLHNMGTCSVSWHADSCLEDYSTIGVYHCTKPEAGK-----EWRIAMRCSDKDGPEGEAASGAPPMVMPLASGDLYMLLGNFNHNREHAVLTGKTSLRYSSTHRVSVVEGNTYQEMAKSASEVLDSNPTTPAA---------LQQQQAIMTELETEWICQFYEKGQIHAEVHTWWHGPIMHLCQLWSQLNDWTEKCIERHCSAGPSTPGISSKTFKVLMRCLEERQQQRVKRQERVASSAFARMPEGLRPVDPPL 1332
            ++L P+   F+      Y GF H+PA       H    + F  L   G F YD+V AGGK +S+T+V RTLVG  GITYKYLG RIFAH W+                                    VPS+ A    L   N+ +VAR   +A+ AP SC        +NL LIN M  D+ + GLK +  ++MG  SVSWHADS LED+S+IGVYH   P         +WRIAMR S    P+   A   PP+V+P   GD+Y L G+FNH+ +H VL+G T++R SSTHRV+V   +T Q +    +  L S+   P           ++ +Q  +T LE +W+ Q++ +G  H ++H  W  P++ L   W +L   T+   +   +   S      K  K ++  L  RQ  R +   R+    F R+    +P++ P+
Sbjct:   79 KFLTPSHPDFHDILTRSYVGFVHEPAAAQPREFHAGMRAAFEHLRDKGYFQYDVVMAGGKHLSRTFVRRTLVGNFGITYKYLGLRIFAHAWD------------------------------------VPSSAAVFRNLYALNQAIVARTKASASPAPPSC-------EYNLTLINYMEPDNPVLGLKDDLTYDMGKVSVSWHADSSLEDFSSIGVYHTLLPTKKSKKGPCDWRIAMRLS----PDVPGAKTTPPLVVPTGDGDVYYLNGDFNHHHQHMVLSG-TAVRVSSTHRVAVTAEDTLQYIQAKVTAALKSSAKDPQDKCRRGHADDVRHEQTTVTTLEMDWLRQYWIQGDKHNDLHVDWQQPMLALEASWRKLEARTKTLAD---ALVQSHDVDDLKVLKAVLEGLRNRQVGRDQFVHRMKDKVFKRIAADFQPMERPV 472          
BLAST of mRNA_C-australica_Contig_1019.4.5 vs. uniprot
Match: A0A448ZBG2_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBG2_9STRA)

HSP 1 Score: 221 bits (564), Expect = 7.090e-61
Identity = 160/456 (35.09%), Postives = 217/456 (47.59%), Query Frame = 1
Query:   40 AAMLREYLLPTDEAFNHTRKSHYAGFEHQPANTIS-NTTHRSFASLFRELDAAGLFLYDIVQAGGKTVSKTYVTRTLVGEPGITYKYLGTRIFAHPWEGRCLQGPRGKELAGSDDGGLWRGGVARAQERLRKAGVPSTLAAAGKLNKWMVARAATAATAAPESCAATRGSCNFNLALINCMDSGLK---GLKPEPLHNMGTCSVSWHADSCLEDYSTIGVYHC--TKPEAGKEWRIAMRCSDKDGPEGEAASGAPPMVMPLASGDLYMLLGNFNHNREHAVLTGKTSLRYSSTHRVSVVEGNTYQEMAKSAS----------EVLD--SNPTTPAA------LQQQQAIMTELETEWICQFYEKGQIHAEVHTWWHGPIMHLCQLWSQLNDWTEKCIERHCSAGPSTPGISSKTFKVLMRCLEERQQQRVKRQERVASSAFAR-MPEGLRPVDPPL 1332
            ++ L  +L P+D  F      HY GF H   + +     H         L  A  + YD+V AGGK  S+T+V RTLVG PGITYKYLG R+FAH W G                                  G    + + G++N+ M+       T   E        C +NL LIN M+  +    G K E  + MG  SVSWHADS LE  S+IGVYHC  T+  +  +WRIA+R      P  +  S A P+V+    GD Y LLG+FN   +H VL G  S R SSTHRV+V   +TY+ + K A           E +D  S+ + PAA      ++  Q +MTELE+EWI Q++ +G  H  +HTWW  P+  L   W  L   T + + R CS  PS   I     +VL+   + RQ  R +  +R A   + R + E  RPV  P+
Sbjct:   56 SSSLPRFLTPSDPNFEKHVAEHYKGFAHCSVDDLRPEGFHDRARDTLERLRDANYYQYDVVMAGGKHSSRTFVRRTLVGNPGITYKYLGLRLFAHAWSGP---------------------------------GASPLMQSIGEMNRDMIRM-----TRRFED----HQHCEYNLTLINYMEPTIHTRVGFKEEADYGMGKVSVSWHADSSLEPGSSIGVYHCLPTQRSSRWDWRIALR------PSPDGGSTARPIVVDTKDGDAYFLLGSFNETHQHCVLAGSQSNRISSTHRVAVTAEDTYEYILKRAKIARKRFRGQLEAIDGSSDSSDPAAEVDAKVVRYCQRVMTELESEWIAQYWLQGIQHDIMHTWWQKPMKTLEAYWRALELATARLVRRVCSREPSAKKIPRDVARVLVHEFKARQALREQWDDRRADKIYQRRISEEYRPVARPV 463          
BLAST of mRNA_C-australica_Contig_1019.4.5 vs. uniprot
Match: A0A024TSQ8_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TSQ8_9STRA)

HSP 1 Score: 221 bits (562), Expect = 8.040e-61
Identity = 161/452 (35.62%), Postives = 219/452 (48.45%), Query Frame = 1
Query:   55 EYLLPTDEAFNHTRKSHYAGFEHQPANTISNTTHRSFASLFRELDAAGLFLYDIVQAGGKTVSKTYVTRTLVGEPGITYKYLGTRIFAHPWEGRCLQGPRGKELAGSDDGGLWRGGVARAQERLRKAGVPSTLAAAGKLNKWMVARAATAATAAPESCAATRGSCNFNLALINCM--DSGLKGLKPEPLHNMGTCSVSWHADSCLEDYSTIGVYHCTKPE--AGK-------EWRIAMRCSDKDGPEGEAASGAPPMVMPLASGDLYMLLGNFNHNREHAVLTGKTSLRYSSTHRVSVVEGNTYQEMAKSASEVLDSNPTTPA--------------ALQQQQAIMTELETEWICQFYEKGQIHAEVHTWWHGPIMHLCQLWSQLNDWTEKCIERHCSAGPSTPGISS-KTFKVLMRCLEERQQQRVKRQERVASSAFARMPEGLRPVDPPL 1332
            ++L P+  +F+      Y GF H+PA       H    + F  L   G F YD+V AGGK +S+T+V RTLVG  GITYKYLG RIFAH W+                              R   A V   + A   LN   +AR   + T  P SC        +NL LIN M  D+ L GLK +P + MG  SVSWHADS LEDYS+IGVYH   P   A K       +WRIAMR S    P+   A   PP+V+P   GD+Y L G+FNH  +H VL+G T++R SSTHRV+V   +T Q +    S  L S+                   A++ +QA +T LE EWI Q++ +G  H ++H  W  P+  L   W +L   T+  +     A  +T  +   K  K ++  L  RQ  R +   R+    F R+    +P++ P+
Sbjct:   88 KFLTPSHPSFHDILTRSYVGFVHEPAAKHPRGFHTGMRTAFETLRDKGYFQYDVVMAGGKHLSRTFVRRTLVGNYGITYKYLGLRIFAHAWD------------------------------RPNSAPVFRNIHA---LNAAFIARTKASMTPPPPSC-------EYNLTLINYMEPDNPLLGLKEDPTYGMGKVSVSWHADSSLEDYSSIGVYHTLLPSKPAKKGTKVGVCDWRIAMRLS----PDVPGAKTTPPLVLPTGDGDVYYLNGDFNHFHQHMVLSG-TAVRVSSTHRVAVTAEDTLQFIQAKVSAALQSSTVQSVPNDADVACRRGHADAVRAEQATITTLEMEWIRQYWIQGAKHNDLHVDWQHPMAALEASWRKLEARTKTLV----GALLATQHVEDLKVVKAVLEGLRGRQAGRDQFVHRMRDKVFKRIDPDFQPMERPV 490          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1019.4.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUI9_ECTSI7.660e-8340.49Alpha-ketoglutarate-dependent dioxygenase FTO n=2 ... [more]
A0A835ZL97_9STRA1.060e-7437.71Alpha-ketoglutarate-dependent dioxygenase FTO n=1 ... [more]
A0A7S2RU45_9STRA5.090e-7434.80Alpha-ketoglutarate-dependent dioxygenase FTO n=1 ... [more]
A0A6G0WHV1_9STRA3.820e-6737.00Alpha-ketoglutarate-dependent dioxygenase FTO n=1 ... [more]
B8BV54_THAPS1.920e-6435.27Alpha-ketoglutarate-dependent dioxygenase FTO (Fra... [more]
A0A485KA16_9STRA2.450e-6235.45Alpha-ketoglutarate-dependent dioxygenase FTO n=1 ... [more]
A0A7S4S7H4_9STRA7.040e-6232.20Alpha-ketoglutarate-dependent dioxygenase FTO n=4 ... [more]
W4FR64_9STRA5.520e-6134.38Alpha-ketoglutarate-dependent dioxygenase FTO n=10... [more]
A0A448ZBG2_9STRA7.090e-6135.09Alpha-ketoglutarate-dependent dioxygenase FTO n=1 ... [more]
A0A024TSQ8_9STRA8.040e-6135.62Alpha-ketoglutarate-dependent dioxygenase FTO n=2 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1019contigC-australica_Contig_1019:8144..11791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FUI9
Preferred nameFTO
PFAMsFTO_CTD,FTO_NTD
Model size1848
Max annot lvl2759|Eukaryota
KEGG koko:K19469
Hectar predicted targeting categoryother localisation
GOsGO:0001659,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008198,GO:0009451,GO:0009888,GO:0009987,GO:0010883,GO:0016070,GO:0016491,GO:0016604,GO:0016607,GO:0016705,GO:0016706,GO:0031974,GO:0031981,GO:0032451,GO:0032501,GO:0032502,GO:0032879,GO:0033554,GO:0034641,GO:0035510,GO:0035511,GO:0035513,GO:0035514,GO:0035515,GO:0035516,GO:0035552,GO:0035553,GO:0040008,GO:0040014,GO:0042127,GO:0042245,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043576,GO:0043734,GO:0044057,GO:0044065,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0045595,GO:0045598,GO:0046483,GO:0046872,GO:0046914,GO:0048513,GO:0048638,GO:0048731,GO:0048856,GO:0048871,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051213,GO:0051239,GO:0051716,GO:0055114,GO:0060612,GO:0061448,GO:0065007,GO:0065008,GO:0070013,GO:0070344,GO:0070350,GO:0070988,GO:0070989,GO:0071704,GO:0080111,GO:0090304,GO:0090335,GO:0140097,GO:0140098,GO:1901360,GO:1905952,GO:1990931
Exons17
Evalue3.6e-84
EggNOG OGs28IRR@1|root,2QR31@2759|Eukaryota
Ec32 ortholog descriptionAlpha-ketoglutarate-dependent dioxygenase FTO, catalytic domain
Ec32 orthologEc-21_003890.1
EC1.14.11.53
DescriptionRNA N6-methyladenosine dioxygenase activity
Cds size1707
COG categoryS
BRITEko00000,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586753.5822992-UTR-C-australica_Contig_1019:8143..82391682586753.5822992-UTR-C-australica_Contig_1019:8143..8239Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1019 8144..8239 -
1682586753.76908-UTR-C-australica_Contig_1019:11746..117911682586753.76908-UTR-C-australica_Contig_1019:11746..11791Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1019 11747..11791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586753.5944133-CDS-C-australica_Contig_1019:8239..83821682586753.5944133-CDS-C-australica_Contig_1019:8239..8382Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 8240..8382 -
1682586753.6038275-CDS-C-australica_Contig_1019:8507..86691682586753.6038275-CDS-C-australica_Contig_1019:8507..8669Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 8508..8669 -
1682586753.6159537-CDS-C-australica_Contig_1019:8793..89271682586753.6159537-CDS-C-australica_Contig_1019:8793..8927Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 8794..8927 -
1682586753.627124-CDS-C-australica_Contig_1019:9169..92671682586753.627124-CDS-C-australica_Contig_1019:9169..9267Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 9170..9267 -
1682586753.6364806-CDS-C-australica_Contig_1019:9379..94221682586753.6364806-CDS-C-australica_Contig_1019:9379..9422Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 9380..9422 -
1682586753.64585-CDS-C-australica_Contig_1019:9560..96361682586753.64585-CDS-C-australica_Contig_1019:9560..9636Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 9561..9636 -
1682586753.6633728-CDS-C-australica_Contig_1019:9702..97691682586753.6633728-CDS-C-australica_Contig_1019:9702..9769Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 9703..9769 -
1682586753.673704-CDS-C-australica_Contig_1019:10010..100791682586753.673704-CDS-C-australica_Contig_1019:10010..10079Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 10011..10079 -
1682586753.6838899-CDS-C-australica_Contig_1019:10172..102611682586753.6838899-CDS-C-australica_Contig_1019:10172..10261Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 10173..10261 -
1682586753.6984427-CDS-C-australica_Contig_1019:10342..104211682586753.6984427-CDS-C-australica_Contig_1019:10342..10421Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 10343..10421 -
1682586753.7102127-CDS-C-australica_Contig_1019:10494..105771682586753.7102127-CDS-C-australica_Contig_1019:10494..10577Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 10495..10577 -
1682586753.718216-CDS-C-australica_Contig_1019:10645..107591682586753.718216-CDS-C-australica_Contig_1019:10645..10759Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 10646..10759 -
1682586753.7282102-CDS-C-australica_Contig_1019:10876..109641682586753.7282102-CDS-C-australica_Contig_1019:10876..10964Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 10877..10964 -
1682586753.7357156-CDS-C-australica_Contig_1019:11024..110861682586753.7357156-CDS-C-australica_Contig_1019:11024..11086Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 11025..11086 -
1682586753.7454422-CDS-C-australica_Contig_1019:11190..113981682586753.7454422-CDS-C-australica_Contig_1019:11190..11398Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 11191..11398 -
1682586753.7532747-CDS-C-australica_Contig_1019:11479..115551682586753.7532747-CDS-C-australica_Contig_1019:11479..11555Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 11480..11555 -
1682586753.761004-CDS-C-australica_Contig_1019:11630..117461682586753.761004-CDS-C-australica_Contig_1019:11630..11746Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 11631..11746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1019.4.5prot_C-australica_Contig_1019.4.5Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1019 8240..11746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1019.4.5

>prot_C-australica_Contig_1019.4.5 ID=prot_C-australica_Contig_1019.4.5|Name=mRNA_C-australica_Contig_1019.4.5|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=569bp
MLREYLLPTDEAFNHTRKSHYAGFEHQPANTISNTTHRSFASLFRELDAA
GLFLYDIVQAGGKTVSKTYVTRTLVGEPGITYKYLGTRIFAHPWEGRCLQ
GPRGKELAGSDDGGLWRGGVARAQERLRKAGVPSTLAAAGKLNKWMVARA
ATAATAAPESCAATRGSCNFNLALINCMDSGLKGLKPEPLHNMGTCSVSW
HADSCLEDYSTIGVYHCTKPEAGKEWRIAMRCSDKDGPEGEAASGAPPMV
MPLASGDLYMLLGNFNHNREHAVLTGKTSLRYSSTHRVSVVEGNTYQEMA
KSASEVLDSNPTTPAALQQQQAIMTELETEWICQFYEKGQIHAEVHTWWH
GPIMHLCQLWSQLNDWTEKCIERHCSAGPSTPGISSKTFKVLMRCLEERQ
QQRVKRQERVASSAFARMPEGLRPVDPPLCMSGPQAIKRLAADIKRLRSS
YGSHCNGNNLTARSVAAGAQSNWDALKRKQSSSSSVEATMPAGPLLRGKN
QSHDHVGAVAGKRKKGAAGPKTSGAQDKTGQGEGPRRKKQRSAPSPGSSD
LAGLQPKKWKKNNRKVAK*
back to top

mRNA from alignment at C-australica_Contig_1019:8144..11791-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1019.4.5 ID=mRNA_C-australica_Contig_1019.4.5|Name=mRNA_C-australica_Contig_1019.4.5|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3648bp|location=Sequence derived from alignment at C-australica_Contig_1019:8144..11791- (Chrysoparadoxa australica CS_1217)
GTCAAAGAGGGGAGAGGTGACCTGCTTAGGAAATCTGGCGCTGCCATGCT GCGCGAGTATCTTCTGCCTACTGACGAAGCCTTTAATCACACGAGAAAGT CCCACTATGCAGGCTTTGAGCACCAGCCCGCTAACACCATAAGCAACACC ACCCATAGGAGGTTAGGACAACCTTACAGCCCTAGTTCCCCTCTCTCTGC CTCATCCCTAACCCTGCTCCTCAACCTTCGCACCAGCTTTGCCAGCCTCT TTAGAGAGCTTGATGCTGCTGGTCTCTTTTTGTACGACATTGTGCAGGCT GGCGGAAAGACGGTGACGATAACAGCCCAGGCCTTCACGTTAAACCTGAG GACCTCACGCTGACACCCATCTCGACATCTGCACATCAAATAGGTTAGCA AGACGTACGTGACACGAACTCTGGTTGGTGAGCCCGGCATCACCTACAAA TATCTCGGAACTAGGATATTCGCTCATCCATGGGAAGGGCGGTGCCTGCA AGGCCCAAGGGGAAAAGAACTTGCTGGAAGTGATGATGGTGGTCTTTGGA GAGGGGGTGTGGCCAGAGCTCAGGAGAGGCTTCGAAAAGCTGGCGTGCCG AGTGAGTAAGCTGACTTTTCATAACACTCCACTCACTCACTCACTCACTC ACTCACTTGTTCAATTGAACCTGGTTGTGCTCTGGTCCCTTTTTTGCCAT GGCAGGCACCCTCGCAGCCGCCGGCAAACTGAACAAATGGATGGTTGCAC GAGCAGCCACTGCAGCGGTATCAGTACATCCCCATGTCTTCCCTGTCAGC ATTCCCTCTCATCACACTTGATTGCAGACCGCGGCCCCTGAGAGTTGTGC GGCAACAAGAGGGTCCTGCAACTTTAACCTTGCTCTCATTAACTGTATGG ATTCTGGACTGAAAGGTAATTGCTCACTCCTTGTGACTCTTACTGATGCA GCGAGATAGCTGAACCACCCTCTGATGCATTGTGCCGGCCTCTCTGATGA TGTTCAACCACTCAATGAGTCTTTTTTTCCAGGGCTTAAGCCAGAGCCCT TGCACAACATGGGTACGTGTTCGGTCAGCTGGCATGCCGATAGTTGCCTT GAGGATTACTCTACTATTGGGGTGTACCACTGCACCAAGCCTGAAGGTTG GCTCCTAATCCTTAACCAGACCCTGATGCTAGCCCTGATGCTAACCCTGC ACCTGACTCTGAAGCTGGCAAAGAATGGAGGATAGCTATGCGTTGTTCTG ACAAAGACGGTCCGGAGGGAGAGGCTGCTTCAGGAGCACCACCAATGGTA GCGACTCTCTTCAGTTCACCCAGGCCTCATTTGTTGACTTAACTCAATAT TTCTGCTGTTATACATCCAGGTTATGCCTCTTGCCAGCGGAGACCTCTAC ATGCTGCTTGGAAACTTCAACCACAATAGGGAGCACGCTGTGCTGACTGG TGAACTGACAACTGATGCCCCTCAGCTACTGACAACTGTCCTCACTCACC TCTTCTCTCTTCTCCTCACTTTCTCTCCAGGCAAGACCAGCCTCAGGTAC AGCTCTACACACAGAGTGAGCGTGGTGGAGGGGAACACGTACCAAGAGAT GGCAAAGAGCGCCTCAGAGGTGAGGGAGTGCCCCGGCTGCCCAGCCTCCT TGCTTCTGGTGGTTAAACTACCCTTTCGGCCTGTGACATGCAACTCCAAA CCATTGCCATAGGTGTTGGACAGCAATCCCACCACACCTGCAGCTCTTCA GCAGCAGCAGGCGATCATGACTGAACTTGAGGTGAATTGAAGTGAATAGA ACTGAACTGAAGTGATGAGTGAAGTGATTGGGTGTTGTGATGTGTGAAGT TACAGCAACAGTTATGGCTAGAAGAGTGAAGGGCTCCCACTCAAGAGTGG TCCACCTGTGCCGCTTGTTGCAGACTCTGCAATTGATGTAATAGGGCTCG GTGCTGGGTCAGGACCCTTAGCAAAGGTTGGCTGGCTACTCTACGTTGAC CCTTGATGCCTTCCCTTACCAGACTGAGTGGATCTGCCAGTTCTACGAGA AGGGTCAGATTCATGCTGAAGTGCACACGTGGTGGCATGGTAACCGTACC CTGACCCTGCAATGCTCAACCTGCAATGCTCAACCATCAAATCTTATGAC TGCAGGCCCTATCATGCACTTGTGTCAACTGTGGAGCCAACTAAACGATT GGACGGAGAAGTGCATTGAGAGGCACTGCAGGTATATCTCACACAGATCA GCACCTATCCCTCCCCTCACTATTGAGCTGCTCAAAGGGAACATGGGCCA CTCTCACTCATAACAGTTCTGACTGAACCACCCCCTCCCCTCCTCTCTCT CTTTGCCTGAATGTGCCAGCGCCGGCCCCAGCACACCGGGCATCTCAAGC AAGACATTTAAGGTCAGGCTTGCTGGACTGAGGGCAGCCATACCCAGTCA CTCTAGTTTCCCTGCCATGTTTTCTCCTCTGCCTCTCCCCAGCTGATAAC CAGTTGCTCTCACTTATCCCTCAGGTGCTGATGCGGTGCCTGGAGGAGAG GCAGCAGCAGAGGGTGAAGCGGCAAGAGAGAGTAGCCAGCTCTGCTTTTG CGCGAATGCCAGAGGGCTTGAGGTAGGATGAAAGTGCACTTTCTTTGCAC AGCAGACGGAATAGACTGAAATTGCTTCGGTTTGGACTGGCCCAAACTCA TCTCATCTCGATGGTTTAGCGCTATCAGTAGCCGTGAGTAAGTGAGTTGG CACGAAGAGCAAAGCTCCATTTCAGACGTATCAGGGCGTCGCGATATATT TCTTTCCTCTTTGGAGAGTTGGCAAGGTTGTCTCTTGTCTCTAACTCAAA CTATCCCCACACAGGCCCGTCGACCCTCCTTTGTGCATGAGTGGACCCCA GGCCATCAAAAGGCTAGCAGCAGACATAAAGAGACTGAGGAGCTCTTACG GCAGCCACTGCAACGGGAATAATCTGACCGCCAGATCAGTGGCAGCAGGT GCAGGTTTTTTCCTCCTTTCAGCGCAGCTTGGAACCAACCAATGTGGAGC CACTCATCAATCCATTAGTCACAAATTCGCCACCACCACTACCCACTAGT CTCAACGTTCAACCCTTCTAAGGGGCCCAAAGCAACTGGGACGCCTTGAA ACGAAAGCAAAGCAGCAGCAGCAGCGTTGAAGCAACGATGCCAGCAGGGC CTTTGTTACGCGGTAAAAATCAGAGCCATGACCATGTTGGAGCAGTGGCG GGGAAGAGGAAGAAGGGTGCAGCAGGACCTAAAAGTGAGTGAATTACCAC TACTTGGCTACCTATGATAACTTGCAGCTCATGCAGCCACTCAGTCAACT CGCCATTTTATCAGAGAGCCTGGCCGTTCAGTAGCATCATTAACATCATT GCGTGTCAGCCTCAGGAGCACAAGACAAGACTGGTCAGGGTGAGGGCCCA AGAAGGAAAAAGCAGCGATCTGCCCCTTCCCCTGGATCGAGTGATTTGGC TGGGCTGCAGCCTAAGAAGTGGAAGAAGAATAATAGAAAAGTTGCCAAGT GAAGCGGCTTGGCTTATTCTCTCCTCTGGCCAGCGTGTTCAACGGCACTA GACAGTTGCAAGAGAAGTGAGGGATAACTTAATTTTCATTGATCACTC
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_1019:8144..11791-

>mRNA_C-australica_Contig_1019.4.5 ID=mRNA_C-australica_Contig_1019.4.5|Name=mRNA_C-australica_Contig_1019.4.5|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1707bp|location=Sequence derived from alignment at C-australica_Contig_1019:8144..11791- (Chrysoparadoxa australica CS_1217)
ATGCTGCGCGAGTATCTTCTGCCTACTGACGAAGCCTTTAATCACACGAG
AAAGTCCCACTATGCAGGCTTTGAGCACCAGCCCGCTAACACCATAAGCA
ACACCACCCATAGGAGCTTTGCCAGCCTCTTTAGAGAGCTTGATGCTGCT
GGTCTCTTTTTGTACGACATTGTGCAGGCTGGCGGAAAGACGGTTAGCAA
GACGTACGTGACACGAACTCTGGTTGGTGAGCCCGGCATCACCTACAAAT
ATCTCGGAACTAGGATATTCGCTCATCCATGGGAAGGGCGGTGCCTGCAA
GGCCCAAGGGGAAAAGAACTTGCTGGAAGTGATGATGGTGGTCTTTGGAG
AGGGGGTGTGGCCAGAGCTCAGGAGAGGCTTCGAAAAGCTGGCGTGCCGA
GCACCCTCGCAGCCGCCGGCAAACTGAACAAATGGATGGTTGCACGAGCA
GCCACTGCAGCGACCGCGGCCCCTGAGAGTTGTGCGGCAACAAGAGGGTC
CTGCAACTTTAACCTTGCTCTCATTAACTGTATGGATTCTGGACTGAAAG
GGCTTAAGCCAGAGCCCTTGCACAACATGGGTACGTGTTCGGTCAGCTGG
CATGCCGATAGTTGCCTTGAGGATTACTCTACTATTGGGGTGTACCACTG
CACCAAGCCTGAAGCTGGCAAAGAATGGAGGATAGCTATGCGTTGTTCTG
ACAAAGACGGTCCGGAGGGAGAGGCTGCTTCAGGAGCACCACCAATGGTT
ATGCCTCTTGCCAGCGGAGACCTCTACATGCTGCTTGGAAACTTCAACCA
CAATAGGGAGCACGCTGTGCTGACTGGCAAGACCAGCCTCAGGTACAGCT
CTACACACAGAGTGAGCGTGGTGGAGGGGAACACGTACCAAGAGATGGCA
AAGAGCGCCTCAGAGGTGTTGGACAGCAATCCCACCACACCTGCAGCTCT
TCAGCAGCAGCAGGCGATCATGACTGAACTTGAGACTGAGTGGATCTGCC
AGTTCTACGAGAAGGGTCAGATTCATGCTGAAGTGCACACGTGGTGGCAT
GGCCCTATCATGCACTTGTGTCAACTGTGGAGCCAACTAAACGATTGGAC
GGAGAAGTGCATTGAGAGGCACTGCAGCGCCGGCCCCAGCACACCGGGCA
TCTCAAGCAAGACATTTAAGGTGCTGATGCGGTGCCTGGAGGAGAGGCAG
CAGCAGAGGGTGAAGCGGCAAGAGAGAGTAGCCAGCTCTGCTTTTGCGCG
AATGCCAGAGGGCTTGAGGCCCGTCGACCCTCCTTTGTGCATGAGTGGAC
CCCAGGCCATCAAAAGGCTAGCAGCAGACATAAAGAGACTGAGGAGCTCT
TACGGCAGCCACTGCAACGGGAATAATCTGACCGCCAGATCAGTGGCAGC
AGGGGCCCAAAGCAACTGGGACGCCTTGAAACGAAAGCAAAGCAGCAGCA
GCAGCGTTGAAGCAACGATGCCAGCAGGGCCTTTGTTACGCGGTAAAAAT
CAGAGCCATGACCATGTTGGAGCAGTGGCGGGGAAGAGGAAGAAGGGTGC
AGCAGGACCTAAAACCTCAGGAGCACAAGACAAGACTGGTCAGGGTGAGG
GCCCAAGAAGGAAAAAGCAGCGATCTGCCCCTTCCCCTGGATCGAGTGAT
TTGGCTGGGCTGCAGCCTAAGAAGTGGAAGAAGAATAATAGAAAAGTTGC
CAAGTGA
back to top