mRNA_C-australica_Contig_999.3.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_999.3.1
Unique NamemRNA_C-australica_Contig_999.3.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_999.3.1 vs. uniprot
Match: A0A6A5BTV8_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BTV8_NAEFO)

HSP 1 Score: 65.5 bits (158), Expect = 9.980e-9
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 3 
Query:  174 KFLAVQCYQCNQYAVQQQTKGNQWSCCMCGSKQSIVKIFGSSNSAKDIRPLVQQ 335
            ++   QCYQC+ ++V Q TK  +W C +CGS+QSI KIF +S+  KD+RP+VQQ
Sbjct:    4 EYAVFQCYQCSAFSVNQITKNRKWKCKLCGSQQSIRKIFATSHQPKDLRPIVQQ 57
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BLAST of mRNA_C-australica_Contig_999.3.1 vs. uniprot
Match: A0A1Y1I702_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I702_KLENI)

HSP 1 Score: 65.1 bits (157), Expect = 1.980e-8
Identity = 25/55 (45.45%), Postives = 41/55 (74.55%), Query Frame = 3 
Query:  174 KFLAVQCYQCNQYAVQQQTKGNQWSCCMCGSKQSIVKIFGSSNSAKDIRPLVQQL 338
            +++ V+C+QC+ + V+Q TK N+WSC +C +KQS++K++G S  A D+R L Q L
Sbjct:    3 EYIVVRCFQCSTFQVKQVTKSNKWSCSLCAAKQSVIKVYGVSGKASDLRKLAQDL 57
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BLAST of mRNA_C-australica_Contig_999.3.1 vs. uniprot
Match: UPI001CFCE7EF (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFCE7EF)

HSP 1 Score: 63.2 bits (152), Expect = 5.080e-8
Identity = 26/54 (48.15%), Postives = 40/54 (74.07%), Query Frame = 3 
Query:  174 KFLAVQCYQCNQYAVQQQTKGNQWSCCMCGSKQSIVKIFGSSNSAKDIRPLVQQ 335
            ++   QCYQC+ ++V Q TK  +W C +CGS+QSI K++ +S+  KD+RP+VQQ
Sbjct:    4 EYAVFQCYQCSAFSVNQITKNRKWKCKLCGSQQSIRKMYATSHQPKDLRPIVQQ 57
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BLAST of mRNA_C-australica_Contig_999.3.1 vs. uniprot
Match: D2VMC5_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VMC5_NAEGR)

HSP 1 Score: 62.4 bits (150), Expect = 8.980e-8
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 3 
Query:  189 QCYQCNQYAVQQQTKGNQWSCCMCGSKQSIVKIFGSSNSAKDIRPLVQQL 338
            QC+ C  +++ Q TK  +W C +CGS+QSI K+F +SN  KD+RP+VQ+L
Sbjct:    8 QCFNCTAFSINQVTKNRKWKCKLCGSQQSIRKVFANSNQPKDLRPIVQEL 57
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BLAST of mRNA_C-australica_Contig_999.3.1 vs. uniprot
Match: A0A1Y2C0C8_9FUNG (SP-RING-type domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2C0C8_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 1.210e-7
Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 3 
Query:  177 FLAVQCYQCNQYAVQQQTKGNQWSCCMCGSKQSIVKIFGSSNSAKDIRPLVQQL 338
            F  V+C+QC+ + VQQ+ K N+W C +CGSKQS+ K++  S+ A D R  VQ+L
Sbjct:    4 FQVVRCFQCSAFVVQQEKKSNKWQCTLCGSKQSVTKVYFESHVAGDTRAAVQEL 57
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BLAST of mRNA_C-australica_Contig_999.3.1 vs. uniprot
Match: D8LE90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE90_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 4.670e-7
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 3 
Query:  177 FLAVQCYQCNQYAVQQQTKGNQWSCCMCGSKQSIVKIFGSSNSAKDIRPLVQQLAAGSAG 356
            FLA++C+ C  + V Q+TK  +W C MCG  QSIVK++G    AKD+R LV  L A + G
Sbjct:    8 FLALRCFSCQCFQVNQRTKSGKWKCRMCGEGQSIVKVWGRGGHAKDVRGLVMALNAAAGG 67
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BLAST of mRNA_C-australica_Contig_999.3.1 vs. uniprot
Match: UPI000644E7BC (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E7BC)

HSP 1 Score: 57.8 bits (138), Expect = 7.480e-6
Identity = 24/54 (44.44%), Postives = 41/54 (75.93%), Query Frame = 3 
Query:  174 KFLAVQCYQCNQYAVQQQTKGNQWSCCMCGSKQSIVKIFGSSNSAKDIRPLVQQ 335
            +++ +QCY C+ + V+Q+TK N ++C +C  KQSI++I+G S  AKD+R LV++
Sbjct:    4 EYILIQCYSCSMFQVKQKTKVNSFTCVICHEKQSIMRIYGISYQAKDLRDLVKK 57
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_999.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6A5BTV8_NAEFO9.980e-951.85Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
A0A1Y1I702_KLENI1.980e-845.45Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
UPI001CFCE7EF5.080e-848.15uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
D2VMC5_NAEGR8.980e-850.00Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A1Y2C0C8_9FUNG1.210e-748.15SP-RING-type domain-containing protein n=1 Tax=Rhi... [more]
D8LE90_ECTSI4.670e-748.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI000644E7BC7.480e-644.44hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_999contigC-australica_Contig_999:1894..2842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3656.XP_008456719.1
PFAMsMRNIP
Model size884
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.92e-07
EggNOG OGs2CY9C@1|root,2S2XR@2759|Eukaryota,37VNH@33090|Viridiplantae,3GJC1@35493|Streptophyta,4JQRB@91835|fabids
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_001350.1
DescriptionMRN-interacting protein
Cds size669
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588866.3655114-UTR-C-australica_Contig_999:1893..20451682588866.3655114-UTR-C-australica_Contig_999:1893..2045Chrysoparadoxa australica CS_1217UTRC-australica_Contig_999 1894..2045 +
1682588866.4037488-UTR-C-australica_Contig_999:2779..28421682588866.4037488-UTR-C-australica_Contig_999:2779..2842Chrysoparadoxa australica CS_1217UTRC-australica_Contig_999 2780..2842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588866.3786106-CDS-C-australica_Contig_999:2045..21651682588866.3786106-CDS-C-australica_Contig_999:2045..2165Chrysoparadoxa australica CS_1217CDSC-australica_Contig_999 2046..2165 +
1682588866.3924727-CDS-C-australica_Contig_999:2230..27791682588866.3924727-CDS-C-australica_Contig_999:2230..2779Chrysoparadoxa australica CS_1217CDSC-australica_Contig_999 2231..2779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_999.3.1prot_C-australica_Contig_999.3.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_999 2046..2779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_999.3.1

>prot_C-australica_Contig_999.3.1 ID=prot_C-australica_Contig_999.3.1|Name=mRNA_C-australica_Contig_999.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=223bp
MWQMSQGKFLAVQCYQCNQYAVQQQTKGNQWSCCMCGSKQSIVKIFGSSN
SAKDIRPLVQQLAAGSAGPACAWRYASDGIIGGQKRGREDAYMANLSEQK
RQRAVIMQDRGDNSMIQSSDGAANMGAMMETGDLGQAYMSQASWSLRNNQ
DLGHRREGAIVGGSMLHFWDSKLVPSAAPPTPASTPQWAHRSLADKMDQM
DEVAPMMDGGSVTSRWDKYMSS*
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mRNA from alignment at C-australica_Contig_999:1894..2842+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_999.3.1 ID=mRNA_C-australica_Contig_999.3.1|Name=mRNA_C-australica_Contig_999.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=949bp|location=Sequence derived from alignment at C-australica_Contig_999:1894..2842+ (Chrysoparadoxa australica CS_1217)
GCATCCCCTGGACGCTGCTGCGTATTACATGGCATTCCCCCCGTTGCCTC
GCTCCTCCTTGCTCTCTTACCCCTGCTTATGTTTATTGTCCTCCTCTACC
CCTCCTGTGCTCCTCTATCGTACCCTTTCTCTAACCGTATCGTACCGCTC
CCATGTGGCAGATGAGTCAGGGGAAATTCTTGGCAGTGCAGTGCTATCAG
TGCAACCAATATGCTGTGCAGCAGCAAACAAAGGGGAATCAATGGAGCTG
TTGTATGTGTGGCAGCAAACAGGTATGATAGCGACCCTGTCTCCCTTATT
AACCCCATGCTCCCTCTAACTTCGCATCCACCTCCAGTCCATTGTCAAAA
TCTTTGGGAGTAGTAATTCCGCAAAGGATATTCGTCCGTTAGTTCAGCAG
CTTGCAGCAGGGTCAGCAGGCCCTGCCTGCGCGTGGAGATATGCTTCTGA
TGGCATAATAGGGGGGCAAAAGAGGGGAAGAGAAGATGCATACATGGCAA
ACCTCTCAGAGCAAAAACGACAACGGGCTGTTATCATGCAGGACCGTGGT
GACAACAGCATGATTCAAAGCAGTGACGGAGCGGCAAACATGGGGGCTAT
GATGGAGACGGGTGATCTGGGTCAGGCTTACATGAGCCAAGCTTCTTGGT
CATTAAGAAATAACCAGGACCTGGGTCATAGACGTGAAGGGGCAATAGTT
GGTGGTAGTATGCTACACTTTTGGGACTCAAAGCTGGTGCCTTCTGCAGC
GCCGCCTACCCCAGCATCTACACCGCAGTGGGCGCACCGTTCTTTGGCAG
ACAAGATGGACCAAATGGATGAAGTGGCACCTATGATGGATGGCGGCTCT
GTCACGTCACGGTGGGACAAGTACATGAGCAGCTAGAAAGGGCAAGGCAA
CGCCAGTCTGCCAGTCTTTTTTTGTCAAAGCTAAGTGTTTTTCTTTTGC
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Coding sequence (CDS) from alignment at C-australica_Contig_999:1894..2842+

>mRNA_C-australica_Contig_999.3.1 ID=mRNA_C-australica_Contig_999.3.1|Name=mRNA_C-australica_Contig_999.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=669bp|location=Sequence derived from alignment at C-australica_Contig_999:1894..2842+ (Chrysoparadoxa australica CS_1217)
ATGTGGCAGATGAGTCAGGGGAAATTCTTGGCAGTGCAGTGCTATCAGTG
CAACCAATATGCTGTGCAGCAGCAAACAAAGGGGAATCAATGGAGCTGTT
GTATGTGTGGCAGCAAACAGTCCATTGTCAAAATCTTTGGGAGTAGTAAT
TCCGCAAAGGATATTCGTCCGTTAGTTCAGCAGCTTGCAGCAGGGTCAGC
AGGCCCTGCCTGCGCGTGGAGATATGCTTCTGATGGCATAATAGGGGGGC
AAAAGAGGGGAAGAGAAGATGCATACATGGCAAACCTCTCAGAGCAAAAA
CGACAACGGGCTGTTATCATGCAGGACCGTGGTGACAACAGCATGATTCA
AAGCAGTGACGGAGCGGCAAACATGGGGGCTATGATGGAGACGGGTGATC
TGGGTCAGGCTTACATGAGCCAAGCTTCTTGGTCATTAAGAAATAACCAG
GACCTGGGTCATAGACGTGAAGGGGCAATAGTTGGTGGTAGTATGCTACA
CTTTTGGGACTCAAAGCTGGTGCCTTCTGCAGCGCCGCCTACCCCAGCAT
CTACACCGCAGTGGGCGCACCGTTCTTTGGCAGACAAGATGGACCAAATG
GATGAAGTGGCACCTATGATGGATGGCGGCTCTGTCACGTCACGGTGGGA
CAAGTACATGAGCAGCTAG
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