mRNA_C-australica_Contig_9988.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9988.1.1
Unique NamemRNA_C-australica_Contig_9988.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: A0A2W7QP81_9RHOB (Amino_oxidase domain-containing protein n=2 Tax=Roseinatronobacter thiooxidans TaxID=121821 RepID=A0A2W7QP81_9RHOB)

HSP 1 Score: 150 bits (380), Expect = 3.100e-42
Identity = 78/124 (62.90%), Postives = 93/124 (75.00%), Query Frame = 1
Query:   28 IIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGEVTFDHGAQYMRPRDPAFAQALATAGAVAWPDGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
            ++IG+GMAGI CARALA AG  V VLDKGRGIGGR+ATRRVALP GEV+FDHGAQY+ PRD  FA+ L  AGA  W DG+    LVG PGM+++ RAMAAGL + Q  EVTA+V+    W + T
Sbjct:   12 LVIGAGMAGITCARALAGAGQSVMVLDKGRGIGGRIATRRVALPAGEVSFDHGAQYVNPRDAGFARELEQAGAALWQDGADAPHLVGAPGMTALARAMAAGLDIRQSCEVTALVQARDGWQVST 135          
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: UPI001D0CC4C3 (FAD-dependent oxidoreductase n=1 Tax=Roseibaca sp. Y0-43 TaxID=2816854 RepID=UPI001D0CC4C3)

HSP 1 Score: 149 bits (376), Expect = 1.020e-41
Identity = 82/130 (63.08%), Postives = 93/130 (71.54%), Query Frame = 1
Query:   10 AGMDQTIIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGEVTFDHGAQYMRPRDPAFAQALATAGAVAWPDGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
            AG   TIIIG+G+ GI CARALA AG PVR+LDKGRGIGGRMAT+RV      + +DHGAQY+RPRDPAFA  L  AGA  W +    DRLVG PGMSS+PRAMA GL V+Q  EVT +    G W LET
Sbjct:    2 AGATGTIIIGAGITGITCARALAQAGTPVRLLDKGRGIGGRMATKRVQAAGLSLHYDHGAQYIRPRDPAFAAELLAAGASVWGE---SDRLVGQPGMSSLPRAMADGLDVAQGVEVTGLHHAGGLWHLET 128          
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: A0A8G2MZ71_9RHOB (Amino_oxidase domain-containing protein n=3 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A8G2MZ71_9RHOB)

HSP 1 Score: 141 bits (355), Expect = 1.670e-38
Identity = 73/124 (58.87%), Postives = 91/124 (73.39%), Query Frame = 1
Query:   28 IIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGEVTFDHGAQYMRPRDPAFAQALATAGAVAWPDGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
            ++IGSGMAG++CA+AL+ AG  V +LDKGRGIGGR+ATRRV LP GEV+FDHGAQY+  RD  FA+ L  AGAV W DG+    LVG PGMS++ RA+A GL + Q  EV+A+ R    WT  T
Sbjct:   12 LVIGSGMAGVSCAQALSGAGQSVLLLDKGRGIGGRIATRRVTLPVGEVSFDHGAQYVSARDDEFAKRLEQAGAVLWQDGAPKRHLVGTPGMSALVRALAQGLEIRQSCEVSALQRTSQGWTATT 135          
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: UPI000A117AE2 (FAD-dependent oxidoreductase n=1 Tax=Salibaculum halophilum TaxID=1914408 RepID=UPI000A117AE2)

HSP 1 Score: 139 bits (350), Expect = 8.130e-38
Identity = 76/130 (58.46%), Postives = 92/130 (70.77%), Query Frame = 1
Query:   16 MDQTIIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGE-VTFDHGAQYMRPRDPAFAQALATAGAVA-WPDGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
            M +T++IG+GMAGIACARAL DAG PVR++DKGRGIGGRMATRR   P G+ + FDHGAQY+  RDPAFA  L  + A A W DG+ H   VG+PGMS +PRA+A GL VS     TA+ R    W + T
Sbjct:    1 MTRTLVIGAGMAGIACARALNDAGHPVRLIDKGRGIGGRMATRRAETPAGQPLRFDHGAQYVTARDPAFAALLEGSQAAALWADGAAHPHHVGLPGMSGLPRALADGLDVSLGVAATAVSRAGPVWQVTT 130          
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: A0A7C9GPW5_9SPHN (NAD(P)-binding protein n=1 Tax=Polymorphobacter fuscus TaxID=1439888 RepID=A0A7C9GPW5_9SPHN)

HSP 1 Score: 130 bits (327), Expect = 2.250e-34
Identity = 73/125 (58.40%), Postives = 84/125 (67.20%), Query Frame = 1
Query:   31 IIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGEVTFDHGAQYMRPRDPAFAQALATAGAVA--WPDGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
            IIG+GMAG+ACAR L +AG    VLDKGRGIGGR+ATRRV L  G  +FDHGAQY+  R P FA AL   G     W DGS   RLVG PGMS +PRAMAAG+ V    +VTA+    G W L+T
Sbjct:    7 IIGAGMAGLACARRLVNAGHAPVVLDKGRGIGGRLATRRVTLAEGATSFDHGAQYLTARHPGFAAALEQLGPACARWDDGSAAPRLVGQPGMSGLPRAMAAGVDVQLGRQVTAVRAVPGGWQLDT 131          
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: A0A543KAS3_9RHOB (Amino_oxidase domain-containing protein n=2 Tax=Roseinatronobacter TaxID=121820 RepID=A0A543KAS3_9RHOB)

HSP 1 Score: 129 bits (323), Expect = 1.020e-33
Identity = 71/124 (57.26%), Postives = 84/124 (67.74%), Query Frame = 1
Query:   28 IIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGEVTFDHGAQYMRPRDPAFAQALATAGAVAWPDGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
            ++IG+GMAGI CAR+L+ AG  V VLDKGRGIGGR+ATRRVAL   EV+FDHGAQY   RD  F   L  AGA  W DG+    LVG PGMS++ RAMA GL +    EVTA+ R    W + T
Sbjct:   15 LVIGAGMAGITCARSLSAAGQSVLVLDKGRGIGGRVATRRVALGEDEVSFDHGAQYFHARDADFEAVLDNAGAAIWDDGAQTRPLVGRPGMSALARAMALGLDIRHACEVTALERVRDGWHVTT 138          
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: UPI0019131934 (FAD-dependent oxidoreductase n=1 Tax=Rhodobaculum claviforme TaxID=1549854 RepID=UPI0019131934)

HSP 1 Score: 128 bits (321), Expect = 1.750e-33
Identity = 72/128 (56.25%), Postives = 87/128 (67.97%), Query Frame = 1
Query:   28 IIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGEVTFDHGAQYMRPRDPAFA---QALATAGAVA-WPDGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
            ++IG+GMAG+ACA  LA AG+P  VLDKGRGIGGR+ATRR  +    V FDHGAQYM  R+PAFA   + +A  GAVA W DGS     VG PGMS++PRAMA GL + Q  EV A+      WT+ T
Sbjct:    6 VVIGAGMAGLACAGRLAQAGVPTLVLDKGRGIGGRLATRRATVAGAAVQFDHGAQYMTAREPAFAALLEGMAMRGAVARWQDGSDRAHWVGAPGMSALPRAMADGLDIRQATEVRALRPGPDGWTVTT 133          
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: A0A5Q4DKH4_9RHOB (FAD-binding protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A5Q4DKH4_9RHOB)

HSP 1 Score: 126 bits (316), Expect = 9.040e-33
Identity = 71/126 (56.35%), Postives = 89/126 (70.63%), Query Frame = 1
Query:   25 TIIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGEVTFDHGAQYMRPRDPAFAQALATAGAVAWP-DGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
            +I+IGSG+AGI+CARALA AG  V VLDKGRGIGGRMATRRV L  GE++FDHGAQ +  ++ AFA  +   GA AW  DG     LVG+PGMS +PR +A GL + Q  E+TA+  +D  W L +
Sbjct:    7 SIVIGSGIAGISCARALAQAGGTVIVLDKGRGIGGRMATRRVTLEIGEISFDHGAQVLPAQNAAFATLMRDTGAAAWDQDGG----LVGVPGMSQLPRRLAEGLDLRQGIEITALAYRDRRWMLSS 128          
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: A0A7Z0L2H6_9RHOB (FAD-dependent oxidoreductase n=1 Tax=Rhabdonatronobacter sediminivivens TaxID=2743469 RepID=A0A7Z0L2H6_9RHOB)

HSP 1 Score: 125 bits (314), Expect = 2.620e-32
Identity = 69/128 (53.91%), Postives = 86/128 (67.19%), Query Frame = 1
Query:   28 IIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGEVTFDHGAQYMRPRDPAFAQALATAG----AVAWPDGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
            I++G+G+AG+ACAR L+DAG  V+VLDKGRGIGGRMATRRV L    + FDHGAQY+   DP FA  LA A     A  W +     R  G+PGMS++PR +AAGL V+Q   VTA+    G W L+T
Sbjct:    8 IVVGAGLAGLACARTLSDAGQSVQVLDKGRGIGGRMATRRVVLDGATLRFDHGAQYVTAYDPGFAALLADAARAGAAAVWDETGPRLRHTGVPGMSALPRHLAAGLAVTQGTTVTALRPGPGGWALQT 135          
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: A0A372IDT0_9RHOB (Deoxyribodipyrimidine photolyase n=1 Tax=Rhodobacteraceae bacterium W635 TaxID=2303578 RepID=A0A372IDT0_9RHOB)

HSP 1 Score: 124 bits (312), Expect = 6.730e-32
Identity = 70/134 (52.24%), Postives = 88/134 (65.67%), Query Frame = 1
Query:    1 RNRAGMDQTIIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGEVTFDHGAQYMRPRDPAFAQALATAGAVA-WPDGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
            R   GM   +I+G+G+ GIACAR L DAGL VR++DKGRGIGGRMATRRV +   E+  DHGAQY+     A A A A  GAVA W  G    R+VG  GM+++PRA+AAGL V+Q  EV A+      W ++T
Sbjct:   30 RGGPGMSDVLIVGAGVTGIACARVLQDAGLAVRLIDKGRGIGGRMATRRVTIDAAELRLDHGAQYLSDGPEAEAIAAAAPGAVARWDPGDGRARIVGHGGMAALPRALAAGLDVAQGVEVGAVSPDGAGWRVDT 163          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2W7QP81_9RHOB3.100e-4262.90Amino_oxidase domain-containing protein n=2 Tax=Ro... [more]
UPI001D0CC4C31.020e-4163.08FAD-dependent oxidoreductase n=1 Tax=Roseibaca sp.... [more]
A0A8G2MZ71_9RHOB1.670e-3858.87Amino_oxidase domain-containing protein n=3 Tax=Rh... [more]
UPI000A117AE28.130e-3858.46FAD-dependent oxidoreductase n=1 Tax=Salibaculum h... [more]
A0A7C9GPW5_9SPHN2.250e-3458.40NAD(P)-binding protein n=1 Tax=Polymorphobacter fu... [more]
A0A543KAS3_9RHOB1.020e-3357.26Amino_oxidase domain-containing protein n=2 Tax=Ro... [more]
UPI00191319341.750e-3356.25FAD-dependent oxidoreductase n=1 Tax=Rhodobaculum ... [more]
A0A5Q4DKH4_9RHOB9.040e-3356.35FAD-binding protein n=1 Tax=Rhodobacteraceae bacte... [more]
A0A7Z0L2H6_9RHOB2.620e-3253.91FAD-dependent oxidoreductase n=1 Tax=Rhabdonatrono... [more]
A0A372IDT0_9RHOB6.730e-3252.24Deoxyribodipyrimidine photolyase n=1 Tax=Rhodobact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9988contigC-australica_Contig_9988:1..399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog391626.OAN307_c45100
PFAMsAmino_oxidase,NAD_binding_8
Model size399
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K06955
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.88e-31
EggNOG OGsCOG3380@1|root,COG3380@2|Bacteria,1R5C0@1224|Proteobacteria,2U3PZ@28211|Alphaproteobacteria
DescriptionNAD FAD-dependent oxidoreductase
Cds size384
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588866.318705-CDS-C-australica_Contig_9988:0..3841682588866.318705-CDS-C-australica_Contig_9988:0..384Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9988 1..384 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588866.3334646-UTR-C-australica_Contig_9988:384..3991682588866.3334646-UTR-C-australica_Contig_9988:384..399Chrysoparadoxa australica CS_1217UTRC-australica_Contig_9988 385..399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9988.1.1prot_C-australica_Contig_9988.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9988 1..384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9988.1.1

>prot_C-australica_Contig_9988.1.1 ID=prot_C-australica_Contig_9988.1.1|Name=mRNA_C-australica_Contig_9988.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=128bp
MDQTIIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTG
EVTFDHGAQYMRPRDPAFAQALATAGAVAWPDGSVHDRLVGMPGMSSVPR
AMAAGLTVSQQAEVTAMVRQDGFWTLET
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mRNA from alignment at C-australica_Contig_9988:1..399-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9988.1.1 ID=mRNA_C-australica_Contig_9988.1.1|Name=mRNA_C-australica_Contig_9988.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=399bp|location=Sequence derived from alignment at C-australica_Contig_9988:1..399- (Chrysoparadoxa australica CS_1217)
CGCAACAGGGCGGGTATGGATCAGACCATCATCATCGGCAGCGGCATGGC CGGGATCGCCTGCGCCCGTGCCTTGGCGGACGCAGGCTTGCCGGTGCGCG TGCTGGACAAGGGCCGTGGCATCGGCGGACGCATGGCGACACGCAGGGTC GCATTGCCCACAGGCGAGGTGACGTTTGACCATGGCGCCCAGTACATGCG CCCGCGCGATCCGGCCTTCGCGCAGGCGCTTGCAACGGCGGGGGCCGTGG CATGGCCCGATGGCAGCGTTCATGACCGGCTCGTCGGGATGCCGGGCATG TCGTCGGTGCCGCGCGCCATGGCCGCAGGGTTGACCGTCTCACAGCAGGC CGAGGTGACAGCCATGGTGCGGCAGGACGGGTTCTGGACACTTGAGACG
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Coding sequence (CDS) from alignment at C-australica_Contig_9988:1..399-

>mRNA_C-australica_Contig_9988.1.1 ID=mRNA_C-australica_Contig_9988.1.1|Name=mRNA_C-australica_Contig_9988.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=384bp|location=Sequence derived from alignment at C-australica_Contig_9988:1..399- (Chrysoparadoxa australica CS_1217)
ATGGATCAGACCATCATCATCGGCAGCGGCATGGCCGGGATCGCCTGCGC
CCGTGCCTTGGCGGACGCAGGCTTGCCGGTGCGCGTGCTGGACAAGGGCC
GTGGCATCGGCGGACGCATGGCGACACGCAGGGTCGCATTGCCCACAGGC
GAGGTGACGTTTGACCATGGCGCCCAGTACATGCGCCCGCGCGATCCGGC
CTTCGCGCAGGCGCTTGCAACGGCGGGGGCCGTGGCATGGCCCGATGGCA
GCGTTCATGACCGGCTCGTCGGGATGCCGGGCATGTCGTCGGTGCCGCGC
GCCATGGCCGCAGGGTTGACCGTCTCACAGCAGGCCGAGGTGACAGCCAT
GGTGCGGCAGGACGGGTTCTGGACACTTGAGACG
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