mRNA_C-australica_Contig_9988.1.1 (mRNA) Chrysoparadoxa australica CS_1217
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Overview
Homology
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: A0A2W7QP81_9RHOB (Amino_oxidase domain-containing protein n=2 Tax=Roseinatronobacter thiooxidans TaxID=121821 RepID=A0A2W7QP81_9RHOB) HSP 1 Score: 150 bits (380), Expect = 3.100e-42 Identity = 78/124 (62.90%), Postives = 93/124 (75.00%), Query Frame = 1
Query: 28 IIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGEVTFDHGAQYMRPRDPAFAQALATAGAVAWPDGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
++IG+GMAGI CARALA AG V VLDKGRGIGGR+ATRRVALP GEV+FDHGAQY+ PRD FA+ L AGA W DG+ LVG PGM+++ RAMAAGL + Q EVTA+V+ W + T
Sbjct: 12 LVIGAGMAGITCARALAGAGQSVMVLDKGRGIGGRIATRRVALPAGEVSFDHGAQYVNPRDAGFARELEQAGAALWQDGADAPHLVGAPGMTALARAMAAGLDIRQSCEVTALVQARDGWQVST 135
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: UPI001D0CC4C3 (FAD-dependent oxidoreductase n=1 Tax=Roseibaca sp. Y0-43 TaxID=2816854 RepID=UPI001D0CC4C3) HSP 1 Score: 149 bits (376), Expect = 1.020e-41 Identity = 82/130 (63.08%), Postives = 93/130 (71.54%), Query Frame = 1
Query: 10 AGMDQTIIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGEVTFDHGAQYMRPRDPAFAQALATAGAVAWPDGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
AG TIIIG+G+ GI CARALA AG PVR+LDKGRGIGGRMAT+RV + +DHGAQY+RPRDPAFA L AGA W + DRLVG PGMSS+PRAMA GL V+Q EVT + G W LET
Sbjct: 2 AGATGTIIIGAGITGITCARALAQAGTPVRLLDKGRGIGGRMATKRVQAAGLSLHYDHGAQYIRPRDPAFAAELLAAGASVWGE---SDRLVGQPGMSSLPRAMADGLDVAQGVEVTGLHHAGGLWHLET 128
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: A0A8G2MZ71_9RHOB (Amino_oxidase domain-containing protein n=3 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A8G2MZ71_9RHOB) HSP 1 Score: 141 bits (355), Expect = 1.670e-38 Identity = 73/124 (58.87%), Postives = 91/124 (73.39%), Query Frame = 1
Query: 28 IIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGEVTFDHGAQYMRPRDPAFAQALATAGAVAWPDGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
++IGSGMAG++CA+AL+ AG V +LDKGRGIGGR+ATRRV LP GEV+FDHGAQY+ RD FA+ L AGAV W DG+ LVG PGMS++ RA+A GL + Q EV+A+ R WT T
Sbjct: 12 LVIGSGMAGVSCAQALSGAGQSVLLLDKGRGIGGRIATRRVTLPVGEVSFDHGAQYVSARDDEFAKRLEQAGAVLWQDGAPKRHLVGTPGMSALVRALAQGLEIRQSCEVSALQRTSQGWTATT 135
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: UPI000A117AE2 (FAD-dependent oxidoreductase n=1 Tax=Salibaculum halophilum TaxID=1914408 RepID=UPI000A117AE2) HSP 1 Score: 139 bits (350), Expect = 8.130e-38 Identity = 76/130 (58.46%), Postives = 92/130 (70.77%), Query Frame = 1
Query: 16 MDQTIIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGE-VTFDHGAQYMRPRDPAFAQALATAGAVA-WPDGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
M +T++IG+GMAGIACARAL DAG PVR++DKGRGIGGRMATRR P G+ + FDHGAQY+ RDPAFA L + A A W DG+ H VG+PGMS +PRA+A GL VS TA+ R W + T
Sbjct: 1 MTRTLVIGAGMAGIACARALNDAGHPVRLIDKGRGIGGRMATRRAETPAGQPLRFDHGAQYVTARDPAFAALLEGSQAAALWADGAAHPHHVGLPGMSGLPRALADGLDVSLGVAATAVSRAGPVWQVTT 130
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: A0A7C9GPW5_9SPHN (NAD(P)-binding protein n=1 Tax=Polymorphobacter fuscus TaxID=1439888 RepID=A0A7C9GPW5_9SPHN) HSP 1 Score: 130 bits (327), Expect = 2.250e-34 Identity = 73/125 (58.40%), Postives = 84/125 (67.20%), Query Frame = 1
Query: 31 IIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGEVTFDHGAQYMRPRDPAFAQALATAGAVA--WPDGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
IIG+GMAG+ACAR L +AG VLDKGRGIGGR+ATRRV L G +FDHGAQY+ R P FA AL G W DGS RLVG PGMS +PRAMAAG+ V +VTA+ G W L+T
Sbjct: 7 IIGAGMAGLACARRLVNAGHAPVVLDKGRGIGGRLATRRVTLAEGATSFDHGAQYLTARHPGFAAALEQLGPACARWDDGSAAPRLVGQPGMSGLPRAMAAGVDVQLGRQVTAVRAVPGGWQLDT 131
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: A0A543KAS3_9RHOB (Amino_oxidase domain-containing protein n=2 Tax=Roseinatronobacter TaxID=121820 RepID=A0A543KAS3_9RHOB) HSP 1 Score: 129 bits (323), Expect = 1.020e-33 Identity = 71/124 (57.26%), Postives = 84/124 (67.74%), Query Frame = 1
Query: 28 IIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGEVTFDHGAQYMRPRDPAFAQALATAGAVAWPDGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
++IG+GMAGI CAR+L+ AG V VLDKGRGIGGR+ATRRVAL EV+FDHGAQY RD F L AGA W DG+ LVG PGMS++ RAMA GL + EVTA+ R W + T
Sbjct: 15 LVIGAGMAGITCARSLSAAGQSVLVLDKGRGIGGRVATRRVALGEDEVSFDHGAQYFHARDADFEAVLDNAGAAIWDDGAQTRPLVGRPGMSALARAMALGLDIRHACEVTALERVRDGWHVTT 138
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: UPI0019131934 (FAD-dependent oxidoreductase n=1 Tax=Rhodobaculum claviforme TaxID=1549854 RepID=UPI0019131934) HSP 1 Score: 128 bits (321), Expect = 1.750e-33 Identity = 72/128 (56.25%), Postives = 87/128 (67.97%), Query Frame = 1
Query: 28 IIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGEVTFDHGAQYMRPRDPAFA---QALATAGAVA-WPDGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
++IG+GMAG+ACA LA AG+P VLDKGRGIGGR+ATRR + V FDHGAQYM R+PAFA + +A GAVA W DGS VG PGMS++PRAMA GL + Q EV A+ WT+ T
Sbjct: 6 VVIGAGMAGLACAGRLAQAGVPTLVLDKGRGIGGRLATRRATVAGAAVQFDHGAQYMTAREPAFAALLEGMAMRGAVARWQDGSDRAHWVGAPGMSALPRAMADGLDIRQATEVRALRPGPDGWTVTT 133
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: A0A5Q4DKH4_9RHOB (FAD-binding protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A5Q4DKH4_9RHOB) HSP 1 Score: 126 bits (316), Expect = 9.040e-33 Identity = 71/126 (56.35%), Postives = 89/126 (70.63%), Query Frame = 1
Query: 25 TIIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGEVTFDHGAQYMRPRDPAFAQALATAGAVAWP-DGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
+I+IGSG+AGI+CARALA AG V VLDKGRGIGGRMATRRV L GE++FDHGAQ + ++ AFA + GA AW DG LVG+PGMS +PR +A GL + Q E+TA+ +D W L +
Sbjct: 7 SIVIGSGIAGISCARALAQAGGTVIVLDKGRGIGGRMATRRVTLEIGEISFDHGAQVLPAQNAAFATLMRDTGAAAWDQDGG----LVGVPGMSQLPRRLAEGLDLRQGIEITALAYRDRRWMLSS 128
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: A0A7Z0L2H6_9RHOB (FAD-dependent oxidoreductase n=1 Tax=Rhabdonatronobacter sediminivivens TaxID=2743469 RepID=A0A7Z0L2H6_9RHOB) HSP 1 Score: 125 bits (314), Expect = 2.620e-32 Identity = 69/128 (53.91%), Postives = 86/128 (67.19%), Query Frame = 1
Query: 28 IIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGEVTFDHGAQYMRPRDPAFAQALATAG----AVAWPDGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
I++G+G+AG+ACAR L+DAG V+VLDKGRGIGGRMATRRV L + FDHGAQY+ DP FA LA A A W + R G+PGMS++PR +AAGL V+Q VTA+ G W L+T
Sbjct: 8 IVVGAGLAGLACARTLSDAGQSVQVLDKGRGIGGRMATRRVVLDGATLRFDHGAQYVTAYDPGFAALLADAARAGAAAVWDETGPRLRHTGVPGMSALPRHLAAGLAVTQGTTVTALRPGPGGWALQT 135
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Match: A0A372IDT0_9RHOB (Deoxyribodipyrimidine photolyase n=1 Tax=Rhodobacteraceae bacterium W635 TaxID=2303578 RepID=A0A372IDT0_9RHOB) HSP 1 Score: 124 bits (312), Expect = 6.730e-32 Identity = 70/134 (52.24%), Postives = 88/134 (65.67%), Query Frame = 1
Query: 1 RNRAGMDQTIIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGEVTFDHGAQYMRPRDPAFAQALATAGAVA-WPDGSVHDRLVGMPGMSSVPRAMAAGLTVSQQAEVTAMVRQDGFWTLET 399
R GM +I+G+G+ GIACAR L DAGL VR++DKGRGIGGRMATRRV + E+ DHGAQY+ A A A A GAVA W G R+VG GM+++PRA+AAGL V+Q EV A+ W ++T
Sbjct: 30 RGGPGMSDVLIVGAGVTGIACARVLQDAGLAVRLIDKGRGIGGRMATRRVTIDAAELRLDHGAQYLSDGPEAEAIAAAAPGAVARWDPGDGRARIVGHGGMAALPRALAAGLDVAQGVEVGAVSPDGAGWRVDT 163 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9988.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_9988.1.1 >prot_C-australica_Contig_9988.1.1 ID=prot_C-australica_Contig_9988.1.1|Name=mRNA_C-australica_Contig_9988.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=128bp MDQTIIIGSGMAGIACARALADAGLPVRVLDKGRGIGGRMATRRVALPTGback to top mRNA from alignment at C-australica_Contig_9988:1..399- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_9988.1.1 ID=mRNA_C-australica_Contig_9988.1.1|Name=mRNA_C-australica_Contig_9988.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=399bp|location=Sequence derived from alignment at C-australica_Contig_9988:1..399- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_9988:1..399- >mRNA_C-australica_Contig_9988.1.1 ID=mRNA_C-australica_Contig_9988.1.1|Name=mRNA_C-australica_Contig_9988.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=384bp|location=Sequence derived from alignment at C-australica_Contig_9988:1..399- (Chrysoparadoxa australica CS_1217)back to top |