mRNA_C-australica_Contig_998.5.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_998.5.1
Unique NamemRNA_C-australica_Contig_998.5.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_998.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_998contigC-australica_Contig_998:11194..11937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size536
Hectar predicted targeting categoryother localisation
Exons4
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588865.5093296-UTR-C-australica_Contig_998:11193..112911682588865.5093296-UTR-C-australica_Contig_998:11193..11291Chrysoparadoxa australica CS_1217UTRC-australica_Contig_998 11194..11291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588865.5207345-CDS-C-australica_Contig_998:11291..113311682588865.5207345-CDS-C-australica_Contig_998:11291..11331Chrysoparadoxa australica CS_1217CDSC-australica_Contig_998 11292..11331 +
1682588865.5305119-CDS-C-australica_Contig_998:11403..115071682588865.5305119-CDS-C-australica_Contig_998:11403..11507Chrysoparadoxa australica CS_1217CDSC-australica_Contig_998 11404..11507 +
1682588865.5406063-CDS-C-australica_Contig_998:11572..116981682588865.5406063-CDS-C-australica_Contig_998:11572..11698Chrysoparadoxa australica CS_1217CDSC-australica_Contig_998 11573..11698 +
1682588865.5504217-CDS-C-australica_Contig_998:11769..119371682588865.5504217-CDS-C-australica_Contig_998:11769..11937Chrysoparadoxa australica CS_1217CDSC-australica_Contig_998 11770..11937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_998.5.1prot_C-australica_Contig_998.5.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_998 11292..11937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_998.5.1

>prot_C-australica_Contig_998.5.1 ID=prot_C-australica_Contig_998.5.1|Name=mRNA_C-australica_Contig_998.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=146bp
MDLDVGDWWKGGEGWVEDPFAREPTPRLQRYLKRREKPLTLDPGKKRVVG
CWKSTQCEITGKINSMPAPHVPQVKQWSEKYYSADAYWGTVLTPQLPFSD
GGREGGGGPVQEPYSNWPVSSEEEWRLKERENPVIVAASELPLNL*
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mRNA from alignment at C-australica_Contig_998:11194..11937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_998.5.1 ID=mRNA_C-australica_Contig_998.5.1|Name=mRNA_C-australica_Contig_998.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=744bp|location=Sequence derived from alignment at C-australica_Contig_998:11194..11937+ (Chrysoparadoxa australica CS_1217)
TGGCTCTCCAGTTCTTCCCCACTCGTAGAGAGGAGCGCCTTCGCGAAAGA
AGGCTTTTTCTTTGCTTGCACCACCTCTTCTGAGCCTTCGCTCGAGAGAT
GGACCTTGATGTAGGGGACTGGTGGAAGGGAGGAGAAGGTCCTGAAAGAG
CTTGATGCTGCGATTATATCTCTTCTTGTCCTTCCAGCCTAATCACCCCT
TGTCTCTCAGGCTGGGTTGAGGACCCTTTTGCACGGGAGCCTACGCCCCG
TTTGCAGCGATACTTGAAGAGAAGGGAAAAGCCTCTGACCCTTGACCCTG
GAAAGAAAAGAGTGGTACGTTGCCTCCTTCTCCCGAATTCATCAAGCTAC
AGCTTTGAAGTCACAGCACCAATCCCCAGGTAGGGTGCTGGAAAAGCACA
CAGTGTGAGATCACTGGCAAAATCAACAGCATGCCAGCACCTCATGTACC
TCAAGTTAAACAATGGAGCGAGAAGTATTATAGCGCAGATGCATACTGGG
GGACGGTGAGTTAGGGAAGTGCTTGAGGCCCTAAAGTGAGCTCCCCTCCA
TCTCACCATGACCCCTGCTGTCACAGGTCCTCACACCACAGCTTCCTTTT
TCCGATGGAGGAAGAGAAGGGGGGGGTGGGCCAGTGCAGGAGCCATACTC
GAACTGGCCTGTTTCTAGTGAAGAGGAGTGGAGACTGAAAGAGCGAGAGA
ATCCAGTAATAGTTGCAGCAAGTGAGTTGCCGCTTAACTTATGA
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Coding sequence (CDS) from alignment at C-australica_Contig_998:11194..11937+

>mRNA_C-australica_Contig_998.5.1 ID=mRNA_C-australica_Contig_998.5.1|Name=mRNA_C-australica_Contig_998.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=438bp|location=Sequence derived from alignment at C-australica_Contig_998:11194..11937+ (Chrysoparadoxa australica CS_1217)
ATGGACCTTGATGTAGGGGACTGGTGGAAGGGAGGAGAAGGCTGGGTTGA
GGACCCTTTTGCACGGGAGCCTACGCCCCGTTTGCAGCGATACTTGAAGA
GAAGGGAAAAGCCTCTGACCCTTGACCCTGGAAAGAAAAGAGTGGTAGGG
TGCTGGAAAAGCACACAGTGTGAGATCACTGGCAAAATCAACAGCATGCC
AGCACCTCATGTACCTCAAGTTAAACAATGGAGCGAGAAGTATTATAGCG
CAGATGCATACTGGGGGACGGTCCTCACACCACAGCTTCCTTTTTCCGAT
GGAGGAAGAGAAGGGGGGGGTGGGCCAGTGCAGGAGCCATACTCGAACTG
GCCTGTTTCTAGTGAAGAGGAGTGGAGACTGAAAGAGCGAGAGAATCCAG
TAATAGTTGCAGCAAGTGAGTTGCCGCTTAACTTATGA
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