mRNA_C-australica_Contig_9969.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9969.1.1
Unique NamemRNA_C-australica_Contig_9969.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_9969.1.1 vs. uniprot
Match: A0A222E5I2_9RHOB (tRNA-dihydrouridine synthase n=4 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E5I2_9RHOB)

HSP 1 Score: 546 bits (1406), Expect = 2.790e-195
Identity = 280/282 (99.29%), Postives = 280/282 (99.29%), Query Frame = 1
Query:    1 QITVPVLLAPLAGITDLPFPTLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGREAGPMAEAARRVADMGARVIDINMGCPAKKVTGGWSGSALMRAPDHALRLIEAVVAAVDLPVTLKTRLGWDVDCLNAPDLARRAEGAGVRMIVIHGRTRCQFYKGAANWAAINEVKSAVQVPVIANGDVVDASAAKDALRLSGADGVMIGRGAQGAPWRLAQVAHALYGAPKPDVPRGRALIDMVCGHYEAMLDFYGATLGNRVARKHLGWYMD 846
            QITVPVLLAPLAGITDLPF TLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGREAGPMAEAARRVADMGARVIDINMGCPAKKVTGGWSGSALMRAPDHALRLIEAVV AVDLPVTLKTRLGWDVDCLNAPDLARRAEGAGVRMIVIHGRTRCQFYKGAANWAAINEVKSAVQVPVIANGDVVDASAAKDALRLSGADGVMIGRGAQGAPWRLAQVAHALYGAPKPDVPRGRALIDMVCGHYEAMLDFYGATLGNRVARKHLGWYMD
Sbjct:    9 QITVPVLLAPLAGITDLPFRTLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGREAGPMAEAARRVADMGARVIDINMGCPAKKVTGGWSGSALMRAPDHALRLIEAVVEAVDLPVTLKTRLGWDVDCLNAPDLARRAEGAGVRMIVIHGRTRCQFYKGAANWAAINEVKSAVQVPVIANGDVVDASAAKDALRLSGADGVMIGRGAQGAPWRLAQVAHALYGAPKPDVPRGRALIDMVCGHYEAMLDFYGATLGNRVARKHLGWYMD 290          
BLAST of mRNA_C-australica_Contig_9969.1.1 vs. uniprot
Match: A0A238K2A8_9RHOB (tRNA-dihydrouridine synthase n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238K2A8_9RHOB)

HSP 1 Score: 495 bits (1274), Expect = 3.590e-175
Identity = 254/282 (90.07%), Postives = 264/282 (93.62%), Query Frame = 1
Query:    1 QITVPVLLAPLAGITDLPFPTLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGREAGPMAEAARRVADMGARVIDINMGCPAKKVTGGWSGSALMRAPDHALRLIEAVVAAVDLPVTLKTRLGWDVDCLNAPDLARRAEGAGVRMIVIHGRTRCQFYKGAANWAAINEVKSAVQVPVIANGDVVDASAAKDALRLSGADGVMIGRGAQGAPWRLAQVAHALYGAPKPDVPRGRALIDMVCGHYEAMLDFYGATLGNRVARKHLGWYMD 846
            +ITVPVLLAPLAGITDLPF +LVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGRE GPMAEAAR VADMGARVIDINMGCPAKKVTGGWSGSALMRAPDHALRLIEAVVAAVDLPVTLKTRLGWD DCLNAPDLARRAEGAGVRM+VIHGRTRCQFYKGAA+WAAI +V+ AVQVPVIANGDVVDA++A+ AL  SGA GVMIGRGAQGAPWRLA+VAHALYG P P VP GRAL DMV GHYEAML FYG TLGNRVARKHLGWYMD
Sbjct:    9 RITVPVLLAPLAGITDLPFRSLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGREPGPMAEAARMVADMGARVIDINMGCPAKKVTGGWSGSALMRAPDHALRLIEAVVAAVDLPVTLKTRLGWDDDCLNAPDLARRAEGAGVRMVVIHGRTRCQFYKGAADWAAIRKVRDAVQVPVIANGDVVDATSARRALAQSGAAGVMIGRGAQGAPWRLAEVAHALYGTPAPQVPTGRALADMVAGHYEAMLGFYGQTLGNRVARKHLGWYMD 290          
BLAST of mRNA_C-australica_Contig_9969.1.1 vs. uniprot
Match: A0A6F8Q8E3_9RHOB (tRNA-dihydrouridine synthase n=7 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A6F8Q8E3_9RHOB)

HSP 1 Score: 486 bits (1252), Expect = 8.040e-172
Identity = 249/282 (88.30%), Postives = 261/282 (92.55%), Query Frame = 1
Query:    1 QITVPVLLAPLAGITDLPFPTLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGREAGPMAEAARRVADMGARVIDINMGCPAKKVTGGWSGSALMRAPDHALRLIEAVVAAVDLPVTLKTRLGWDVDCLNAPDLARRAEGAGVRMIVIHGRTRCQFYKGAANWAAINEVKSAVQVPVIANGDVVDASAAKDALRLSGADGVMIGRGAQGAPWRLAQVAHALYGAPKPDVPRGRALIDMVCGHYEAMLDFYGATLGNRVARKHLGWYMD 846
            +ITVPVLLAPLAGITDLPF TLVSRFGAGLVVSEMIASGEFLT RPGTREKAELGAQIENTSVQIAGRE GPMAEAAR VADMGARVIDINMGCPAKKVTGGWSGSALMRAPDHALRL+EAVV AVDLPVTLKTRLGWD D LNAP +AR AE AGV+MIVIHGRTRCQFYKG A+WAAI+EVK AVQVPVIANGDV+DA+AA++AL  SGADGVMIGRGAQGAPWRLA+VAHALYG P P+VP G ALIDMV GHYEAML FYG TLGNRVARKHLGWYMD
Sbjct:    9 RITVPVLLAPLAGITDLPFRTLVSRFGAGLVVSEMIASGEFLTERPGTREKAELGAQIENTSVQIAGREPGPMAEAARMVADMGARVIDINMGCPAKKVTGGWSGSALMRAPDHALRLVEAVVEAVDLPVTLKTRLGWDEDHLNAPQIARSAEAAGVKMIVIHGRTRCQFYKGKADWAAISEVKKAVQVPVIANGDVIDAAAAREALSRSGADGVMIGRGAQGAPWRLAEVAHALYGTPAPEVPEGAALIDMVSGHYEAMLGFYGKTLGNRVARKHLGWYMD 290          
BLAST of mRNA_C-australica_Contig_9969.1.1 vs. uniprot
Match: UPI001C463976 (tRNA dihydrouridine synthase DusB n=1 Tax=Roseobacteraceae TaxID=2854170 RepID=UPI001C463976)

HSP 1 Score: 484 bits (1246), Expect = 6.590e-171
Identity = 249/282 (88.30%), Postives = 261/282 (92.55%), Query Frame = 1
Query:    1 QITVPVLLAPLAGITDLPFPTLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGREAGPMAEAARRVADMGARVIDINMGCPAKKVTGGWSGSALMRAPDHALRLIEAVVAAVDLPVTLKTRLGWDVDCLNAPDLARRAEGAGVRMIVIHGRTRCQFYKGAANWAAINEVKSAVQVPVIANGDVVDASAAKDALRLSGADGVMIGRGAQGAPWRLAQVAHALYGAPKPDVPRGRALIDMVCGHYEAMLDFYGATLGNRVARKHLGWYMD 846
            QIT PVLLAPLAGITDLPF TLVSRFGAGLVVSEMIASGEFLT RPGTREKAELGAQIENTSVQIAGREAGPMAEAAR VADMGARVIDINMGCPAKKVTGGWSGSALM+ PDHALRLIEAVVAAVDLPVTLKTRLGWD DCLNA ++ARRAE AGVRMIVIHGRTRCQFYKG+A+WAAI+EVK+AVQVPVIANGDVV  + A+ AL  SGADGVMIGRGAQGAPWRLAQVAHALYGAP P VP+G  L+DMV GHY+AML FYG TLGNRVARKHLGWYMD
Sbjct:    9 QITEPVLLAPLAGITDLPFRTLVSRFGAGLVVSEMIASGEFLTERPGTREKAELGAQIENTSVQIAGREAGPMAEAARMVADMGARVIDINMGCPAKKVTGGWSGSALMQVPDHALRLIEAVVAAVDLPVTLKTRLGWDNDCLNAAEIARRAEAAGVRMIVIHGRTRCQFYKGSADWAAISEVKNAVQVPVIANGDVVSPATARQALARSGADGVMIGRGAQGAPWRLAQVAHALYGAPAPVVPQGTDLVDMVSGHYDAMLAFYGKTLGNRVARKHLGWYMD 290          
BLAST of mRNA_C-australica_Contig_9969.1.1 vs. uniprot
Match: A0A0N7LZ82_9RHOB (tRNA-dihydrouridine synthase n=1 Tax=Tropicibacter naphthalenivorans TaxID=441103 RepID=A0A0N7LZ82_9RHOB)

HSP 1 Score: 466 bits (1199), Expect = 9.790e-164
Identity = 235/282 (83.33%), Postives = 253/282 (89.72%), Query Frame = 1
Query:    1 QITVPVLLAPLAGITDLPFPTLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGREAGPMAEAARRVADMGARVIDINMGCPAKKVTGGWSGSALMRAPDHALRLIEAVVAAVDLPVTLKTRLGWDVDCLNAPDLARRAEGAGVRMIVIHGRTRCQFYKGAANWAAINEVKSAVQVPVIANGDVVDASAAKDALRLSGADGVMIGRGAQGAPWRLAQVAHALYGAPKPDVPRGRALIDMVCGHYEAMLDFYGATLGNRVARKHLGWYMD 846
            +IT PVLLAPLAGITDLPF  LVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGRE  PMAEAAR+V DMGA+V+DINMGCPAKKVTGGWSGSALM+ PDHALRLIEAVV AVD+PVTLKTRLGWD    NA DLA+RAEGAGVRM+VIHGRTRCQFYKG A+WAAI EVK AV VPV+ANGD++DA+ A+ AL LSGADGVM+GRGAQGAPW LA++A  LYG P PD+P G AL DMVC HYEAMLDFYGATLGNRVARKHLGWYMD
Sbjct:    9 EITPPVLLAPLAGITDLPFRNLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGREPEPMAEAARQVVDMGAKVVDINMGCPAKKVTGGWSGSALMQVPDHALRLIEAVVNAVDVPVTLKTRLGWDDSARNAADLAKRAEGAGVRMVVIHGRTRCQFYKGHADWAAIAEVKQAVNVPVVANGDIIDAATARQALDLSGADGVMVGRGAQGAPWVLAEIAAELYGTPAPDIPTGSALADMVCAHYEAMLDFYGATLGNRVARKHLGWYMD 290          
BLAST of mRNA_C-australica_Contig_9969.1.1 vs. uniprot
Match: UPI000EF4BD7A (tRNA dihydrouridine synthase DusB n=1 Tax=Tropicibacter sp. LMIT003 TaxID=2267683 RepID=UPI000EF4BD7A)

HSP 1 Score: 464 bits (1195), Expect = 3.700e-163
Identity = 236/282 (83.69%), Postives = 254/282 (90.07%), Query Frame = 1
Query:    1 QITVPVLLAPLAGITDLPFPTLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGREAGPMAEAARRVADMGARVIDINMGCPAKKVTGGWSGSALMRAPDHALRLIEAVVAAVDLPVTLKTRLGWDVDCLNAPDLARRAEGAGVRMIVIHGRTRCQFYKGAANWAAINEVKSAVQVPVIANGDVVDASAAKDALRLSGADGVMIGRGAQGAPWRLAQVAHALYGAPKPDVPRGRALIDMVCGHYEAMLDFYGATLGNRVARKHLGWYMD 846
            +I  PVLLAPLAGITDLPF +LVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGREA PMAEAAR+V DMGARV+DINMGCPAKKVTGGWSGSALM+ PDHALRLIEAVV AVD+PVTLKTRLGW+   LNAPDLARRAEGAGVRMIVIHGRTRCQFYKG A+WAAI  VK+AV +PV+ANGD+VDA  A+ AL  S ADGVMIGRGAQGAPW LAQ+A  L+G P+PD+P+GRAL DMVC HYEAML FYG TLGNRVARKHLGWYMD
Sbjct:    9 EIVPPVLLAPLAGITDLPFRSLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGREAAPMAEAARQVVDMGARVVDINMGCPAKKVTGGWSGSALMQVPDHALRLIEAVVEAVDVPVTLKTRLGWNDATLNAPDLARRAEGAGVRMIVIHGRTRCQFYKGRADWAAIRAVKNAVTIPVVANGDIVDAPTARTALEQSDADGVMIGRGAQGAPWVLAQIAADLFGTPQPDIPQGRALTDMVCEHYEAMLSFYGETLGNRVARKHLGWYMD 290          
BLAST of mRNA_C-australica_Contig_9969.1.1 vs. uniprot
Match: A0A8J7WD69_9RHOB (tRNA-dihydrouridine synthase n=2 Tax=Aestuariicoccus sp. KMU-90 TaxID=2827239 RepID=A0A8J7WD69_9RHOB)

HSP 1 Score: 464 bits (1195), Expect = 2.190e-162
Identity = 235/281 (83.63%), Postives = 252/281 (89.68%), Query Frame = 1
Query:    4 ITVPVLLAPLAGITDLPFPTLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGREAGPMAEAARRVADMGARVIDINMGCPAKKVTGGWSGSALMRAPDHALRLIEAVVAAVDLPVTLKTRLGWDVDCLNAPDLARRAEGAGVRMIVIHGRTRCQFYKGAANWAAINEVKSAVQVPVIANGDVVDASAAKDALRLSGADGVMIGRGAQGAPWRLAQVAHALYGAPKPDVPRGRALIDMVCGHYEAMLDFYGATLGNRVARKHLGWYMD 846
            I+ PVLLAPLAGITDLPF TLVS FGAGLVVSEMIASGEFLTARPGTREKAELGAQ+ENTSVQIAGRE GPMAEAAR VADMGARVIDINMGCPAKKVTGG+SGSALMR PDHALRL+EAVV AVD+PVTLKTRLGWD DCLNAPDLARRAE AGVRM+VIHGRTRCQFYKG A+WAAI  V+ AV +PVIANGD+ DA+ A+ AL  SGA GVM+GRGAQGAPWRLA++AHALYG   P +PRG AL+DMV GHYEAML FYGA LG RVARKHLGWYMD
Sbjct:   56 ISPPVLLAPLAGITDLPFRTLVSSFGAGLVVSEMIASGEFLTARPGTREKAELGAQVENTSVQIAGREPGPMAEAARMVADMGARVIDINMGCPAKKVTGGYSGSALMRDPDHALRLVEAVVGAVDVPVTLKTRLGWDTDCLNAPDLARRAEAAGVRMVVIHGRTRCQFYKGRADWAAIRAVRDAVSIPVIANGDITDAATARQALTQSGAAGVMVGRGAQGAPWRLAEIAHALYGTDAPVIPRGAALVDMVAGHYEAMLAFYGADLGLRVARKHLGWYMD 336          
BLAST of mRNA_C-australica_Contig_9969.1.1 vs. uniprot
Match: UPI001C38DDE4 (tRNA dihydrouridine synthase DusB n=1 Tax=Thalassococcus sp. CAU 1522 TaxID=2851652 RepID=UPI001C38DDE4)

HSP 1 Score: 460 bits (1183), Expect = 3.550e-161
Identity = 231/281 (82.21%), Postives = 249/281 (88.61%), Query Frame = 1
Query:    4 ITVPVLLAPLAGITDLPFPTLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGREAGPMAEAARRVADMGARVIDINMGCPAKKVTGGWSGSALMRAPDHALRLIEAVVAAVDLPVTLKTRLGWDVDCLNAPDLARRAEGAGVRMIVIHGRTRCQFYKGAANWAAINEVKSAVQVPVIANGDVVDASAAKDALRLSGADGVMIGRGAQGAPWRLAQVAHALYGAPKPDVPRGRALIDMVCGHYEAMLDFYGATLGNRVARKHLGWYMD 846
            +T PVLLAPLAGITDLPF TLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGA I NTSVQ+AGRE GPMAEAAR VADMGARVIDINMGCPAKKVTGGWSGSALM+ PDHALRLIEAVV AVDLPVTLKTRLGWD  CLNAPDLARRAE AGVRM+VIHGRTRCQFYKG A+WAAI  VK AV +PVIANGD+VDA  A+DA+  SGADGVM+GR AQGAPWRLA++AH+L+G P P +P+G AL++MV  HYEAML FYG  LG R ARKHLGWYMD
Sbjct:   17 VTPPVLLAPLAGITDLPFRTLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAGIANTSVQLAGREPGPMAEAARMVADMGARVIDINMGCPAKKVTGGWSGSALMQVPDHALRLIEAVVGAVDLPVTLKTRLGWDDGCLNAPDLARRAEAAGVRMVVIHGRTRCQFYKGRADWAAIRAVKEAVSIPVIANGDIVDAGTARDAMDASGADGVMVGRAAQGAPWRLAEIAHSLFGVPAPRIPQGMALVEMVIAHYEAMLSFYGVDLGLRCARKHLGWYMD 297          
BLAST of mRNA_C-australica_Contig_9969.1.1 vs. uniprot
Match: A3K6F4_9RHOB (tRNA-dihydrouridine synthase n=3 Tax=Sagittula TaxID=58842 RepID=A3K6F4_9RHOB)

HSP 1 Score: 457 bits (1177), Expect = 1.370e-160
Identity = 232/276 (84.06%), Postives = 247/276 (89.49%), Query Frame = 1
Query:   19 LLAPLAGITDLPFPTLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGREAGPMAEAARRVADMGARVIDINMGCPAKKVTGGWSGSALMRAPDHALRLIEAVVAAVDLPVTLKTRLGWDVDCLNAPDLARRAEGAGVRMIVIHGRTRCQFYKGAANWAAINEVKSAVQVPVIANGDVVDASAAKDALRLSGADGVMIGRGAQGAPWRLAQVAHALYGAPKPDVPRGRALIDMVCGHYEAMLDFYGATLGNRVARKHLGWYMD 846
            LLAPLAGITDLPF TLVSR+GAGLVVSEMIASGEFLTARPGTREKAELGAQ+ENTSVQIAGRE  PMAEAAR VADMGARVIDINMGCPAKKVTGGWSGSALMR PDHALRLIEAVVAAVDLPVTLKTRLGWD   LNAP+LARRAEGAGVRMIVIHGRTRCQFYKG A+WAAI  VK AV +PV+ANGD+ DA  A+ AL LSGADGVM+GRGAQGAPW LA++A  L+GAP P++P G  L D+V  HYEAMLDFYG TLGNRVARKHLGWYMD
Sbjct:    2 LLAPLAGITDLPFRTLVSRYGAGLVVSEMIASGEFLTARPGTREKAELGAQVENTSVQIAGREPEPMAEAARMVADMGARVIDINMGCPAKKVTGGWSGSALMRVPDHALRLIEAVVAAVDLPVTLKTRLGWDDTDLNAPELARRAEGAGVRMIVIHGRTRCQFYKGRADWAAIRPVKDAVSIPVVANGDITDADTARRALDLSGADGVMVGRGAQGAPWMLAEIASKLHGAPAPEIPEGTELADLVAEHYEAMLDFYGPTLGNRVARKHLGWYMD 277          
BLAST of mRNA_C-australica_Contig_9969.1.1 vs. uniprot
Match: A0A7W6DX11_9RHOB (tRNA-dihydrouridine synthase n=2 Tax=Sagittula marina TaxID=943940 RepID=A0A7W6DX11_9RHOB)

HSP 1 Score: 453 bits (1166), Expect = 6.260e-159
Identity = 230/276 (83.33%), Postives = 249/276 (90.22%), Query Frame = 1
Query:   19 LLAPLAGITDLPFPTLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGREAGPMAEAARRVADMGARVIDINMGCPAKKVTGGWSGSALMRAPDHALRLIEAVVAAVDLPVTLKTRLGWDVDCLNAPDLARRAEGAGVRMIVIHGRTRCQFYKGAANWAAINEVKSAVQVPVIANGDVVDASAAKDALRLSGADGVMIGRGAQGAPWRLAQVAHALYGAPKPDVPRGRALIDMVCGHYEAMLDFYGATLGNRVARKHLGWYMD 846
            +LAPLAGITDLPF TLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGRE   MAEAAR VADMGAR+IDINMGCPAKKVTGGWSGSALM+ PDHALRLIEAVV AVDLPVTLKTRLGW+ +  NAPDLARRAEGAGVRM+VIHGRTRCQFYKG+A+WAAI +V+ AV +PV+ANGD++DA  A+ AL+ SGADGVMIGRGAQGAPW LAQVA  LYGAP PD+P+G  LI MV  HYE+MLDFYG TLGNRVARKHLGWYMD
Sbjct:    1 MLAPLAGITDLPFRTLVSRFGAGLVVSEMIASGEFLTARPGTREKAELGAQIENTSVQIAGREPDAMAEAARMVADMGARLIDINMGCPAKKVTGGWSGSALMQVPDHALRLIEAVVNAVDLPVTLKTRLGWNDEARNAPDLARRAEGAGVRMVVIHGRTRCQFYKGSADWAAIRDVRDAVDIPVVANGDIIDADTARLALKQSGADGVMIGRGAQGAPWVLAQVAADLYGAPPPDIPKGDDLISMVSEHYESMLDFYGPTLGNRVARKHLGWYMD 276          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9969.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A222E5I2_9RHOB2.790e-19599.29tRNA-dihydrouridine synthase n=4 Tax=Roseobacterac... [more]
A0A238K2A8_9RHOB3.590e-17590.07tRNA-dihydrouridine synthase n=1 Tax=Maliponia aqu... [more]
A0A6F8Q8E3_9RHOB8.040e-17288.30tRNA-dihydrouridine synthase n=7 Tax=Roseobacterac... [more]
UPI001C4639766.590e-17188.30tRNA dihydrouridine synthase DusB n=1 Tax=Roseobac... [more]
A0A0N7LZ82_9RHOB9.790e-16483.33tRNA-dihydrouridine synthase n=1 Tax=Tropicibacter... [more]
UPI000EF4BD7A3.700e-16383.69tRNA dihydrouridine synthase DusB n=1 Tax=Tropicib... [more]
A0A8J7WD69_9RHOB2.190e-16283.63tRNA-dihydrouridine synthase n=2 Tax=Aestuariicocc... [more]
UPI001C38DDE43.550e-16182.21tRNA dihydrouridine synthase DusB n=1 Tax=Thalasso... [more]
A3K6F4_9RHOB1.370e-16084.06tRNA-dihydrouridine synthase n=3 Tax=Sagittula Tax... [more]
A0A7W6DX11_9RHOB6.260e-15983.33tRNA-dihydrouridine synthase n=2 Tax=Sagittula mar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9969contigC-australica_Contig_9969:1..846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog388399.SSE37_06694
Preferred namedusB
PFAMsDus
Model size846
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K05540
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.25e-161
EggNOG OGsCOG0042@1|root,COG0042@2|Bacteria,1MV5V@1224|Proteobacteria,2TRC8@28211|Alphaproteobacteria
DescriptionCatalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
Cds size846
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588864.6023357-CDS-C-australica_Contig_9969:0..8461682588864.6023357-CDS-C-australica_Contig_9969:0..846Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9969 1..846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9969.1.1prot_C-australica_Contig_9969.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9969 1..846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9969.1.1

>prot_C-australica_Contig_9969.1.1 ID=prot_C-australica_Contig_9969.1.1|Name=mRNA_C-australica_Contig_9969.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=282bp
QITVPVLLAPLAGITDLPFPTLVSRFGAGLVVSEMIASGEFLTARPGTRE
KAELGAQIENTSVQIAGREAGPMAEAARRVADMGARVIDINMGCPAKKVT
GGWSGSALMRAPDHALRLIEAVVAAVDLPVTLKTRLGWDVDCLNAPDLAR
RAEGAGVRMIVIHGRTRCQFYKGAANWAAINEVKSAVQVPVIANGDVVDA
SAAKDALRLSGADGVMIGRGAQGAPWRLAQVAHALYGAPKPDVPRGRALI
DMVCGHYEAMLDFYGATLGNRVARKHLGWYMD
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mRNA from alignment at C-australica_Contig_9969:1..846+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9969.1.1 ID=mRNA_C-australica_Contig_9969.1.1|Name=mRNA_C-australica_Contig_9969.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=846bp|location=Sequence derived from alignment at C-australica_Contig_9969:1..846+ (Chrysoparadoxa australica CS_1217)
CAGATCACCGTTCCTGTTTTGCTGGCACCGCTGGCGGGAATCACCGATCT GCCGTTTCCCACACTTGTTTCGCGCTTTGGCGCCGGTCTTGTCGTTTCCG AGATGATCGCCAGCGGCGAATTTCTGACCGCGCGCCCCGGCACACGGGAA AAGGCCGAACTGGGCGCGCAGATAGAGAATACGTCGGTGCAGATCGCCGG TCGAGAGGCGGGACCGATGGCAGAGGCGGCGCGCCGGGTGGCCGATATGG GTGCGCGGGTGATCGACATCAACATGGGGTGCCCGGCGAAGAAGGTCACC GGCGGATGGTCCGGGTCGGCGCTGATGCGGGCGCCGGATCACGCGCTGCG CCTGATAGAGGCGGTTGTTGCGGCGGTGGATTTACCAGTGACGCTAAAGA CGCGGCTTGGCTGGGATGTGGACTGTTTGAACGCGCCGGATCTGGCGCGC CGGGCCGAAGGTGCAGGCGTCAGGATGATCGTCATTCATGGCCGCACGCG CTGTCAGTTTTACAAGGGTGCGGCCAACTGGGCCGCCATAAATGAGGTGA AGAGCGCTGTGCAAGTGCCTGTAATTGCAAACGGAGATGTCGTTGACGCC TCCGCTGCCAAAGATGCGCTGCGCCTGTCCGGGGCGGATGGCGTCATGAT CGGACGCGGGGCGCAAGGGGCCCCTTGGCGGTTGGCGCAAGTTGCCCATG CCCTGTACGGCGCACCAAAACCGGACGTGCCCCGGGGCCGTGCGTTGATC GATATGGTCTGCGGACACTATGAGGCCATGCTGGACTTCTACGGGGCCAC TCTGGGCAACCGTGTCGCGCGCAAACATCTGGGATGGTACATGGAT
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Coding sequence (CDS) from alignment at C-australica_Contig_9969:1..846+

>mRNA_C-australica_Contig_9969.1.1 ID=mRNA_C-australica_Contig_9969.1.1|Name=mRNA_C-australica_Contig_9969.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=846bp|location=Sequence derived from alignment at C-australica_Contig_9969:1..846+ (Chrysoparadoxa australica CS_1217)
CAGATCACCGTTCCTGTTTTGCTGGCACCGCTGGCGGGAATCACCGATCT
GCCGTTTCCCACACTTGTTTCGCGCTTTGGCGCCGGTCTTGTCGTTTCCG
AGATGATCGCCAGCGGCGAATTTCTGACCGCGCGCCCCGGCACACGGGAA
AAGGCCGAACTGGGCGCGCAGATAGAGAATACGTCGGTGCAGATCGCCGG
TCGAGAGGCGGGACCGATGGCAGAGGCGGCGCGCCGGGTGGCCGATATGG
GTGCGCGGGTGATCGACATCAACATGGGGTGCCCGGCGAAGAAGGTCACC
GGCGGATGGTCCGGGTCGGCGCTGATGCGGGCGCCGGATCACGCGCTGCG
CCTGATAGAGGCGGTTGTTGCGGCGGTGGATTTACCAGTGACGCTAAAGA
CGCGGCTTGGCTGGGATGTGGACTGTTTGAACGCGCCGGATCTGGCGCGC
CGGGCCGAAGGTGCAGGCGTCAGGATGATCGTCATTCATGGCCGCACGCG
CTGTCAGTTTTACAAGGGTGCGGCCAACTGGGCCGCCATAAATGAGGTGA
AGAGCGCTGTGCAAGTGCCTGTAATTGCAAACGGAGATGTCGTTGACGCC
TCCGCTGCCAAAGATGCGCTGCGCCTGTCCGGGGCGGATGGCGTCATGAT
CGGACGCGGGGCGCAAGGGGCCCCTTGGCGGTTGGCGCAAGTTGCCCATG
CCCTGTACGGCGCACCAAAACCGGACGTGCCCCGGGGCCGTGCGTTGATC
GATATGGTCTGCGGACACTATGAGGCCATGCTGGACTTCTACGGGGCCAC
TCTGGGCAACCGTGTCGCGCGCAAACATCTGGGATGGTACATGGAT
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